December 2012 - macports-changes - lists.macosforge.org

[100330] trunk/dports/tex/texlive-bin
by ryandesign＠macports.org 08 Dec '12

08 Dec '12

Revision: 100330 https://trac.macports.org/changeset/100330 Author: ryandesign(a)macports.org Date: 2012-12-08 06:26:26 -0800 (Sat, 08 Dec 2012) Log Message: ----------- texlive-bin: add patch from icu port to fix build on Tiger (#35452) Modified Paths: -------------- trunk/dports/tex/texlive-bin/Portfile Added Paths: ----------- trunk/dports/tex/texlive-bin/files/patch-libs_icu_icu-49.1_common_putil.cpp.diff Modified: trunk/dports/tex/texlive-bin/Portfile =================================================================== --- trunk/dports/tex/texlive-bin/Portfile 2012-12-08 13:44:57 UTC (rev 100329) +++ trunk/dports/tex/texlive-bin/Portfile 2012-12-08 14:26:26 UTC (rev 100330) @@ -303,6 +303,10 @@ default_variants +x11 } +platform darwin 8 { + patchfiles-append patch-libs_icu_icu-49.1_common_putil.cpp.diff +} + livecheck.type regex livecheck.url ${homepage}acquire.html livecheck.regex "TeX Live (\[0-9\]+) " Copied: trunk/dports/tex/texlive-bin/files/patch-libs_icu_icu-49.1_common_putil.cpp.diff (from rev 100308, trunk/dports/devel/icu/files/patch-common-putil.cpp.diff) =================================================================== --- trunk/dports/tex/texlive-bin/files/patch-libs_icu_icu-49.1_common_putil.cpp.diff (rev 0) +++ trunk/dports/tex/texlive-bin/files/patch-libs_icu_icu-49.1_common_putil.cpp.diff 2012-12-08 14:26:26 UTC (rev 100330) @@ -0,0 +1,17 @@ +http://bugs.icu-project.org/trac/ticket/9367 +--- libs/icu/icu-49.1/common/putil.cpp.orig 2012-06-01 10:52:46.000000000 -0400 ++++ libs/icu/icu-49.1/common/putil.cpp 2012-10-05 19:53:14.000000000 -0400 +@@ -123,6 +123,13 @@ + #endif + + /* ++ * Mac OS X 10.4 doesn't use its localtime_r() declaration in <time.h> if either _ANSI_SOURCE or _POSIX_C_SOURCE is #defined. ++ */ ++#if defined(U_TZNAME) && U_PLATFORM_IS_DARWIN_BASED && (defined(_ANSI_SOURCE) || defined(_POSIX_C_SOURCE)) ++U_CFUNC struct tm *localtime_r(const time_t *, struct tm *); ++#endif ++ ++/* + * Only include langinfo.h if we have a way to get the codeset. If we later + * depend on more feature, we can test on U_HAVE_NL_LANGINFO. + *

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[100329] trunk/dports/net/skypipe/Portfile
by g5pw＠macports.org 08 Dec '12

08 Dec '12

Revision: 100329 https://trac.macports.org/changeset/100329 Author: g5pw(a)macports.org Date: 2012-12-08 05:44:57 -0800 (Sat, 08 Dec 2012) Log Message: ----------- net/skypipe: fix category update to latest commit Modified Paths: -------------- trunk/dports/net/skypipe/Portfile Modified: trunk/dports/net/skypipe/Portfile =================================================================== --- trunk/dports/net/skypipe/Portfile 2012-12-08 11:45:06 UTC (rev 100328) +++ trunk/dports/net/skypipe/Portfile 2012-12-08 13:44:57 UTC (rev 100329) @@ -5,12 +5,12 @@ PortGroup github 1.0 PortGroup python 1.0 -github.setup progrium skypipe 0.1 +github.setup progrium skypipe 0.2 fetch.type git -git.branch 0cdeb3778a9eb240941e72c5a7ec84653502aa1e +git.branch 6162610a1876282ff1cc8eeca6c8669b8f605482 python.default_version 27 -categories devel +categories net devel maintainers g5pw openmaintainer supported_archs noarch

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[100328] trunk/dports/_resources/port1.0/fetch/mirror_sites.tcl
by ryandesign＠macports.org 08 Dec '12

08 Dec '12

Revision: 100328 https://trac.macports.org/changeset/100328 Author: ryandesign(a)macports.org Date: 2012-12-08 03:45:06 -0800 (Sat, 08 Dec 2012) Log Message: ----------- mirror_sites.tcl: remove mirror.elen.ktu.lt which does not resolve Modified Paths: -------------- trunk/dports/_resources/port1.0/fetch/mirror_sites.tcl Modified: trunk/dports/_resources/port1.0/fetch/mirror_sites.tcl =================================================================== --- trunk/dports/_resources/port1.0/fetch/mirror_sites.tcl 2012-12-08 11:03:23 UTC (rev 100327) +++ trunk/dports/_resources/port1.0/fetch/mirror_sites.tcl 2012-12-08 11:45:06 UTC (rev 100328) @@ -130,7 +130,6 @@ http://ftp.rhnet.is/pub/gentoo/distfiles/:nosubdir http://ftp.heanet.ie/pub/gentoo/distfiles/:nosubdir http://gentoo.tups.lv/source/distfiles/:nosubdir - http://mirror.elen.ktu.lt/gentoo/distfiles/:nosubdir http://mirror.cambrium.nl/pub/os/linux/gentoo/distfiles/:nosubdir http://gentoo.tiscali.nl/distfiles/:nosubdir http://mirror.gentoo.no/distfiles/:nosubdir

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[100327] trunk/dports/python/py-pyquery/Portfile
by jmr＠macports.org 08 Dec '12

08 Dec '12

Revision: 100327 https://trac.macports.org/changeset/100327 Author: jmr(a)macports.org Date: 2012-12-08 03:03:23 -0800 (Sat, 08 Dec 2012) Log Message: ----------- py-pyquery: maintainer update to 1.2.4, no longer supports python 2.5 (#37233) Modified Paths: -------------- trunk/dports/python/py-pyquery/Portfile Modified: trunk/dports/python/py-pyquery/Portfile =================================================================== --- trunk/dports/python/py-pyquery/Portfile 2012-12-08 10:58:36 UTC (rev 100326) +++ trunk/dports/python/py-pyquery/Portfile 2012-12-08 11:03:23 UTC (rev 100327) @@ -5,7 +5,7 @@ PortGroup python 1.0 name py-pyquery -version 1.2.1 +version 1.2.4 categories-append devel platforms darwin supported_archs noarch @@ -21,11 +21,10 @@ master_sites http://pypi.python.org/packages/source/p/pyquery distname pyquery-${version} -checksums rmd160 f74c85ee0ef903260bd31e5e102c4ea51ae460b5 \ - sha256 a607f81a628887e2cf03d5dddee6f092faf411e51b894130a2b4c839e60c408f +checksums rmd160 bce4fef874ecdefcb98b1af3d15e4972e613e068 \ + sha256 1c39f786c42430279eadf787f1ef06873f15c9acba2698c23dfd925ac7b169d7 -python.versions 25 26 27 31 32 -python.default_version 27 +python.versions 26 27 31 32 if {${subport} != ${name}} { depends_build-append port:py${python.version}-distribute @@ -33,10 +32,11 @@ port:py${python.version}-cssselect post-destroot { set doc ${destroot}${prefix}/share/doc/${subport} - xinstall -m 644 -W ${worksrcpath} CHANGES.txt README.txt ${doc} + xinstall -m 644 -W ${worksrcpath} CHANGES.rst README.rst ${doc} xinstall -m 644 -W ${worksrcpath}/docs ajax.txt api.txt \ - attributes.txt css.txt future.txt index.txt \ - manipulating.txt testing.txt tips.txt traversing.txt ${doc} + attributes.txt changes.txt css.txt future.txt index.txt \ + manipulating.txt scrap.txt testing.txt tips.txt traversing.txt \ + ${doc} } livecheck.type none } else {

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[100326] trunk/dports/python/py-coverage/Portfile
by jmr＠macports.org 08 Dec '12

08 Dec '12

Revision: 100326 https://trac.macports.org/changeset/100326 Author: jmr(a)macports.org Date: 2012-12-08 02:58:36 -0800 (Sat, 08 Dec 2012) Log Message: ----------- py-coverage: maintainer update to 3.5.3 (#37232) Modified Paths: -------------- trunk/dports/python/py-coverage/Portfile Modified: trunk/dports/python/py-coverage/Portfile =================================================================== --- trunk/dports/python/py-coverage/Portfile 2012-12-08 10:40:47 UTC (rev 100325) +++ trunk/dports/python/py-coverage/Portfile 2012-12-08 10:58:36 UTC (rev 100326) @@ -5,9 +5,8 @@ PortGroup python 1.0 name py-coverage -version 3.5.2 +version 3.5.3 python.versions 25 26 27 31 32 -python.default_version 27 categories-append devel maintainers gmail.com:larry.velazquez openmaintainer license BSD @@ -24,8 +23,8 @@ master_sites http://pypi.python.org/packages/source/c/coverage/ distname coverage-${version} -checksums rmd160 067ac677b713dd83e3046e3b15a163a53bb9c975 \ - sha256 b9e0dc65e42236a3c9b8978701bc9e7298ed7e24d39f99ea2ba4b945d537fe55 +checksums rmd160 32cefafbfc0fca5b4a132c205861b8d620eb7614 \ + sha256 60c6e95979d71175eb8acb7ca2def14c72794de418fd9222011f68283eb3cc02 if {${subport} != ${name}} { depends_lib-append port:py${python.version}-distribute

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[100325] trunk/dports/www/webkit-gtk/Portfile
by ryandesign＠macports.org 08 Dec '12

08 Dec '12

Revision: 100325 https://trac.macports.org/changeset/100325 Author: ryandesign(a)macports.org Date: 2012-12-08 02:40:47 -0800 (Sat, 08 Dec 2012) Log Message: ----------- webkit-gtk: ensure google-test is not active, to prevent build problem reported in #36784 Modified Paths: -------------- trunk/dports/www/webkit-gtk/Portfile Modified: trunk/dports/www/webkit-gtk/Portfile =================================================================== --- trunk/dports/www/webkit-gtk/Portfile 2012-12-08 10:39:19 UTC (rev 100324) +++ trunk/dports/www/webkit-gtk/Portfile 2012-12-08 10:40:47 UTC (rev 100325) @@ -2,6 +2,7 @@ # $Id$ PortSystem 1.0 +PortGroup conflicts_build 1.0 PortGroup muniversal 1.0 name webkit-gtk @@ -53,6 +54,8 @@ xrender-check.patch \ tiger.patch +conflicts_build google-test + # https://trac.macports.org/ticket/36329 configure.python /usr/bin/python

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[100324] trunk/dports/math
by ryandesign＠macports.org 08 Dec '12

08 Dec '12

Revision: 100324 https://trac.macports.org/changeset/100324 Author: ryandesign(a)macports.org Date: 2012-12-08 02:39:19 -0800 (Sat, 08 Dec 2012) Log Message: ----------- prc: new port, version 1.5.6 (#37182) Added Paths: ----------- trunk/dports/math/prc/ trunk/dports/math/prc/Portfile trunk/dports/math/prc/files/ trunk/dports/math/prc/files/patch-Makefile.in.diff trunk/dports/math/prc/files/patch-configure.diff Added: trunk/dports/math/prc/Portfile =================================================================== --- trunk/dports/math/prc/Portfile (rev 0) +++ trunk/dports/math/prc/Portfile 2012-12-08 10:39:19 UTC (rev 100324) @@ -0,0 +1,57 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 + +name prc +version 1.5.6 +categories math science +platforms darwin +maintainers ryandesign openmaintainer +license GPL-2+ + +description program for aligning and scoring two profile hidden \ + Markov models + +long_description PRC is a stand-alone program for aligning and scoring two \ + profile hidden Markov models. This can be used to detect \ + remote relationships between profiles more effectively \ + than by doing simple profile-sequence comparisons. \ + PRC takes into account all transition and emission \ + probabilities in both hidden Markov models. \ + PRC can read SAM, HMMER, PSI-BLAST and FASTA files. + +homepage http://supfam.mrc-lmb.cam.ac.uk/PRC/ +master_sites ${homepage}programs/PRC-${version} + +extract.suffix .tgz +distfiles ${name}-${version}-src${extract.suffix} + +checksums rmd160 1a79a72cf7329a6cb4433d2cf67c4ce123f1b605 \ + sha256 2ad9dcd0621a7262b5754426a62cd630dfbf14b04481fde116fa169d89249394 + +patchfiles patch-configure.diff \ + patch-Makefile.in.diff + +destroot { + xinstall -W ${worksrcpath} \ + convert_to_prc \ + merge_aligns.pl \ + prc \ + ${destroot}${prefix}/bin + + set docdir ${prefix}/share/doc/${name} + xinstall -d ${destroot}${docdir} + xinstall -W ${worksrcpath} -m 644 \ + COPYING \ + LICENSE \ + README \ + ${destroot}${docdir} + + xinstall -d ${destroot}${prefix}/share/examples + copy ${worksrcpath}/example ${destroot}${prefix}/share/examples/${name} +} + +livecheck.type regex +livecheck.url ${homepage}programs/ +livecheck.regex PRC-(\[0-9.\]+)/ Property changes on: trunk/dports/math/prc/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native Added: trunk/dports/math/prc/files/patch-Makefile.in.diff =================================================================== --- trunk/dports/math/prc/files/patch-Makefile.in.diff (rev 0) +++ trunk/dports/math/prc/files/patch-Makefile.in.diff 2012-12-08 10:39:19 UTC (rev 100324) @@ -0,0 +1,11 @@ +--- Makefile.in.orig 2009-07-07 14:58:30.000000000 -0500 ++++ Makefile.in 2012-12-02 03:37:37.000000000 -0600 +@@ -6,7 +6,7 @@ + -DPROF_HMM_TRANS=PLAN9 \ + -DPAIR_HMM_STATES=SPACE5 \ + -DPAIR_HMM_TRANS=ALL_TRANS +-LIBS = @LIBS@ ++LIBS = @LIBS@ @LDFLAGS@ + + + # assorted variables Added: trunk/dports/math/prc/files/patch-configure.diff =================================================================== --- trunk/dports/math/prc/files/patch-configure.diff (rev 0) +++ trunk/dports/math/prc/files/patch-configure.diff 2012-12-08 10:39:19 UTC (rev 100324) @@ -0,0 +1,10 @@ +--- configure.orig 2009-07-07 12:04:33.000000000 -0500 ++++ configure 2012-12-02 03:29:19.000000000 -0600 +@@ -1357,7 +1357,6 @@ + ;; + esac + else +- CFLAGS="-O3 -Wall -Werror" + case "${host}" in + alpha* ) + CFLAGS="${CFLAGS} -mieee"

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[100323] trunk/dports/graphics/wxWidgets/Portfile
by jwa＠macports.org 08 Dec '12

08 Dec '12

Revision: 100323 https://trac.macports.org/changeset/100323 Author: jwa(a)macports.org Date: 2012-12-08 00:11:15 -0800 (Sat, 08 Dec 2012) Log Message: ----------- wxWidgets: make this to return an error on 10.8 Modified Paths: -------------- trunk/dports/graphics/wxWidgets/Portfile Modified: trunk/dports/graphics/wxWidgets/Portfile =================================================================== --- trunk/dports/graphics/wxWidgets/Portfile 2012-12-08 07:10:02 UTC (rev 100322) +++ trunk/dports/graphics/wxWidgets/Portfile 2012-12-08 08:11:15 UTC (rev 100323) @@ -110,6 +110,12 @@ } } +platform darwin 12 { + pre-fetch { + return -code return "${name} does not build on 10.8 due to missing Carbon support, please use port ${name}30 instead" + } +} + post-build { foreach c { ${contrib} } { system "cd ${build.dir} && make -C contrib/src/${c}"

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[100322] trunk/dports/science/lalpulsar/Portfile
by ram＠macports.org 08 Dec '12

08 Dec '12

Revision: 100322 https://trac.macports.org/changeset/100322 Author: ram(a)macports.org Date: 2012-12-07 23:10:02 -0800 (Fri, 07 Dec 2012) Log Message: ----------- science/lalpulsar: actually import active variants port group Modified Paths: -------------- trunk/dports/science/lalpulsar/Portfile Modified: trunk/dports/science/lalpulsar/Portfile =================================================================== --- trunk/dports/science/lalpulsar/Portfile 2012-12-08 07:07:56 UTC (rev 100321) +++ trunk/dports/science/lalpulsar/Portfile 2012-12-08 07:10:02 UTC (rev 100322) @@ -1,6 +1,7 @@ # $Id$ PortSystem 1.0 +PortGroup active_variants 1.1 name lalpulsar version 1.5.0

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[100321] trunk/dports/science/lalapps/Portfile
by ram＠macports.org 08 Dec '12

08 Dec '12

Revision: 100321 https://trac.macports.org/changeset/100321 Author: ram(a)macports.org Date: 2012-12-07 23:07:56 -0800 (Fri, 07 Dec 2012) Log Message: ----------- science/lalapps: use active variants port group Modified Paths: -------------- trunk/dports/science/lalapps/Portfile Modified: trunk/dports/science/lalapps/Portfile =================================================================== --- trunk/dports/science/lalapps/Portfile 2012-12-08 07:07:50 UTC (rev 100320) +++ trunk/dports/science/lalapps/Portfile 2012-12-08 07:07:56 UTC (rev 100321) @@ -1,6 +1,7 @@ # $Id$ PortSystem 1.0 +PortGroup active_variants 1.1 name lalapps version 6.10.0 @@ -49,26 +50,8 @@ use_parallel_build yes variant lalxml description {Build with LALXML support} { - pre-fetch { - if { ![file exists ${prefix}/include/lal/LALXMLVOTableSerializersPulsar.h] } { - ui_error " -**** -**** LALApps +lalxml requires LALPulsar +lalxml, please -**** reinstall LALPulsar with the +lalxml variant. -**** -" - error "${name} +lalxml requires lalpulsar +lalxml" - } - if { ![file exists ${prefix}/include/lal/LALInferenceXML.h] } { - ui_error " -**** -**** LALApps +lalxml requires LALInference +lalxml, please -**** reinstall LALInference with the +lalxml variant. -**** -" - error "${name} +lalxml requires lalinference +lalxml" - } - } + require_active_variants lalpulsar lalxml + require_active_variants lalinference lalxml depends_lib-append port:libxml2 \ port:lalxml configure.args-append --enable-lalxml

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