February 2012 - macports-changes - lists.macosforge.org

[90210] trunk/dports/security/skipfish/Portfile
by snc＠macports.org 26 Feb '12

26 Feb '12

Revision: 90210 http://trac.macports.org/changeset/90210 Author: snc(a)macports.org Date: 2012-02-26 08:51:26 -0800 (Sun, 26 Feb 2012) Log Message: ----------- skipfish: update to 2.04b, ensure UsingTheRightCompiler Modified Paths: -------------- trunk/dports/security/skipfish/Portfile Modified: trunk/dports/security/skipfish/Portfile =================================================================== --- trunk/dports/security/skipfish/Portfile 2012-02-26 16:43:13 UTC (rev 90209) +++ trunk/dports/security/skipfish/Portfile 2012-02-26 16:51:26 UTC (rev 90210) @@ -4,7 +4,7 @@ PortSystem 1.0 name skipfish -version 2.03b +version 2.04b license Apache-2.0 categories security maintainers snc openmaintainer @@ -19,16 +19,18 @@ master_sites googlecode extract.suffix .tgz -checksums rmd160 54cd5a35b6ab78622eeee3d2e868630da4a94d78 \ - sha256 6168f9e7dfa12a5e16b6a1615c74e91bfe04cd534f8fca8179ad4deb09468f38 +checksums rmd160 efa82b2209768d86167c49a6face06a224182aed \ + sha256 4988d600200825a7c85214088d1b97366cd11eb75d614ddffa491c73afba27d6 patchfiles patch-config.h.diff post-patch { reinplace s|@@SHARE@@|${prefix}/share/${name}/|g ${worksrcpath}/config.h + reinplace s|-L/usr/local/lib/\ ||g ${worksrcpath}/Makefile } use_configure no +build.args-append CC=${configure.cc} destroot { file mkdir ${destroot}${prefix}/share/${name} file copy ${worksrcpath}/skipfish ${destroot}${prefix}/bin/skipfish

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[90209] trunk/dports/tex/sketch/Portfile
by snc＠macports.org 26 Feb '12

26 Feb '12

Revision: 90209 http://trac.macports.org/changeset/90209 Author: snc(a)macports.org Date: 2012-02-26 08:43:13 -0800 (Sun, 26 Feb 2012) Log Message: ----------- sketch: blind update to 0.3.7, http://lists.macosforge.org/pipermail/macports-dev/2012-February/017934.html Modified Paths: -------------- trunk/dports/tex/sketch/Portfile Modified: trunk/dports/tex/sketch/Portfile =================================================================== --- trunk/dports/tex/sketch/Portfile 2012-02-26 16:36:35 UTC (rev 90208) +++ trunk/dports/tex/sketch/Portfile 2012-02-26 16:43:13 UTC (rev 90209) @@ -4,7 +4,7 @@ PortSystem 1.0 name sketch -version 0.3.2 +version 0.3.7 categories tex maintainers snc openmaintainer license GPL-3+ @@ -20,11 +20,15 @@ master_sites ${homepage} -checksums rmd160 80c6162eb6a6726551aae04630089e7f1cf10d8c \ - sha256 f6fc891fcf35284c018aa6786baf67429494f7499c533b7901b0e741b2a8e52f +checksums rmd160 cba6f2c8c8644f76e49c4756a4212d3014747375 \ + sha256 12962ad5fe5a0f7c9fc6d84bd4d09b879bbf604975c839405f1613be657ba804 extract.suffix .tgz +patch { + reinplace "s|CC\ \=\ gcc\ -O1\ -g\ -Wall|CC \= ${configure.cc} ${configure.cflags}|g" ${worksrcpath}/makefile +} + use_configure no build.target sketch

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[90208] trunk/base
by cal＠macports.org 26 Feb '12

26 Feb '12

Revision: 90208 http://trac.macports.org/changeset/90208 Author: cal(a)macports.org Date: 2012-02-26 08:36:35 -0800 (Sun, 26 Feb 2012) Log Message: ----------- freshmeat is now freecode, see #32026 These changes do not affect any behavior of base. Modified Paths: -------------- trunk/base/doc/portfile.7 trunk/base/portmgr/ReleaseProcess trunk/base/src/port1.0/portlivecheck.tcl Modified: trunk/base/doc/portfile.7 =================================================================== --- trunk/base/doc/portfile.7 2012-02-26 16:26:17 UTC (rev 90207) +++ trunk/base/doc/portfile.7 2012-02-26 16:36:35 UTC (rev 90208) @@ -1672,8 +1672,8 @@ .It Ic livecheck.type What kind of check to perform to figure out if the software has been updated. Can be -.Em freshmeat -(uses the date_updated tag of the freshmeat XML file), +.Em freecode +(uses the date_updated tag of the freecode XML file), .Em sourceforge (uses the version of the latest file release of the project), .Em googlecode @@ -1697,19 +1697,19 @@ or .Em googlecode if the master_sites is one of these, else -.Em freshmeat +.Em freecode .br .Sy Values: -.Em freshmeat sourceforge googlecode moddate regex regexm md5 none +.Em freecode sourceforge googlecode moddate regex regexm md5 none .It Ic livecheck.name -Name of the project for live checks (used for freshmeat, sourceforge, and googlecode checks). +Name of the project for live checks (used for freecode, sourceforge, and googlecode checks). .br .Sy Type: .Em optional .br .Sy Default: .Em ${name} -or the sourceforge/freshmeat/googlecode project name if it can be guessed by looking at the master_sites. +or the sourceforge/freecode/googlecode project name if it can be guessed by looking at the master_sites. .It Ic livecheck.distname Name of the file release (used for sourceforge and googlecode checks). For sourceforge releases use the name of the package release. @@ -1741,7 +1741,7 @@ .Sy Default: .Em ${homepage} or -.Em http://freshmeat.net/projects-xml/${livecheck.name}/${livecheck.name}.xml +.Em http://freecode.com/projects/${livecheck.name}/releases.atom or .Em http://sourceforge.net/export/rss2_projfiles.php?project=${livecheck.name} or Modified: trunk/base/portmgr/ReleaseProcess =================================================================== --- trunk/base/portmgr/ReleaseProcess 2012-02-26 16:26:17 UTC (rev 90207) +++ trunk/base/portmgr/ReleaseProcess 2012-02-26 16:36:35 UTC (rev 90208) @@ -221,7 +221,7 @@ * The macports-announce@, macports-users@ and macports-dev@ mailing lists. * The MacPorts website, by adapting the $macports_version_major and $macports_version_latest variables as appropriate in the trunk/www/includes/common.inc file. * [https://trac.macports.org/news/] The MacOSforge news section (submitter: portmgr@) - * [http://freshmeat.net/projects/macports/ Freshmeat] (submitter: mww@) + * [http://freecode.com/projects/macports/ Freecode] (submitter: mww@) * [http://www.versiontracker.com/dyn/moreinfo/macosx/26679 VersionTracker] (submitter: mij@) * [http://sourceforge.net/projects/macports/ sourceforge] (submitted: rhwood@) * [http://www.macupdate.com/info.php/id/21309/macports MacUpdate] (submitter: ???) Modified: trunk/base/src/port1.0/portlivecheck.tcl =================================================================== --- trunk/base/src/port1.0/portlivecheck.tcl 2012-02-26 16:26:17 UTC (rev 90207) +++ trunk/base/src/port1.0/portlivecheck.tcl 2012-02-26 16:36:35 UTC (rev 90208) @@ -87,9 +87,9 @@ return -code 1 "No available types were found. Check '$types_dir'." } - # Convert available_types from a list of files (e.g., { freshmeat.tcl + # Convert available_types from a list of files (e.g., { freecode.tcl # gnu.tcl ... }) into a string in the format "type|type|..." (e.g., - # "freshmeat|gnu|..."). + # "freecode|gnu|..."). set available_types [regsub -all {\.tcl} [join $available_types |] {}] if {${livecheck.type} eq "default"} {

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[90207] trunk/dports/textproc/lilypond-devel/Portfile
by snc＠macports.org 26 Feb '12

26 Feb '12

Revision: 90207 http://trac.macports.org/changeset/90207 Author: snc(a)macports.org Date: 2012-02-26 08:26:17 -0800 (Sun, 26 Feb 2012) Log Message: ----------- lilypond-devel: blind update to 2.15.30 Modified Paths: -------------- trunk/dports/textproc/lilypond-devel/Portfile Modified: trunk/dports/textproc/lilypond-devel/Portfile =================================================================== --- trunk/dports/textproc/lilypond-devel/Portfile 2012-02-26 16:17:56 UTC (rev 90206) +++ trunk/dports/textproc/lilypond-devel/Portfile 2012-02-26 16:26:17 UTC (rev 90207) @@ -5,8 +5,7 @@ name lilypond-devel set my_name lilypond -version 2.15.28 -revision 1 +version 2.15.30 set branch [join [lrange [split ${version} .] 0 1] .] categories textproc maintainers snc openmaintainer @@ -24,8 +23,8 @@ master_sites http://download.linuxaudio.org/lilypond/sources/v${branch}/ distname ${my_name}-${version} dist_subdir ${name}/${version}_${revision} -checksums rmd160 ead47757478bb63652e36a2b8c340424f2ba51d1 \ - sha256 3215b85f5ff165c4a5a6f5c490bae4c3cca0e758502b086ab6cc67e7831fcfe7 +checksums rmd160 d753f8c7624850f900d4f4bfb96689c3c07eb2ca \ + sha256 d6cbd2d73dd132b9595a5556855cd88d6d1b5042d93cbcfac44cd6f114e07a86 depends_build port:t1utils \

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[90206] trunk/dports/devel/autogen
by rmstonecipher＠macports.org 26 Feb '12

26 Feb '12

Revision: 90206 http://trac.macports.org/changeset/90206 Author: rmstonecipher(a)macports.org Date: 2012-02-26 08:17:56 -0800 (Sun, 26 Feb 2012) Log Message: ----------- devel/autogen upgraded version from 5.11.5 to 5.14, removed unnecessary patchfile and files directory, fixed broken livecheck (maintainer timeout #31636) Modified Paths: -------------- trunk/dports/devel/autogen/Portfile Removed Paths: ------------- trunk/dports/devel/autogen/files/ Modified: trunk/dports/devel/autogen/Portfile =================================================================== --- trunk/dports/devel/autogen/Portfile 2012-02-26 14:58:01 UTC (rev 90205) +++ trunk/dports/devel/autogen/Portfile 2012-02-26 16:17:56 UTC (rev 90206) @@ -3,7 +3,7 @@ PortSystem 1.0 name autogen -version 5.11.5 +version 5.14 categories devel platforms darwin maintainers mww @@ -16,22 +16,17 @@ be kept synchronized. homepage http://autogen.sourceforge.net/ -master_sites sourceforge gnu:autogen:rel5.9 -checksums md5 51c841eab6114de22b55f77a1c4f85b8 \ - sha1 f0950b57095cc6802fdd7f9d217289c99ec0bdb4 \ - rmd160 7cc668ef8243cd219307ef01386766ce36419554 -use_bzip2 yes +master_sites sourceforge gnu:autogen/rel${version} +checksums md5 f82648739393ce5eba4c33ecd25df488 \ + sha1 310fd4f774033e6c80f8865fcc46fd4ee8a2649b \ + rmd160 800bc01130202a5502e1462c9462cde23b665aa9 +use_xz yes depends_lib port:guile port:libiconv port:libxml2 port:zlib port:coreutils configure.args --mandir=${prefix}/share/man \ --infodir=${prefix}/share/info -patchfiles patch_doc_auto-opts.tpl.diff -post-patch { - reinplace "s|%%CONFIGURE.CC%%|${configure.cc}|g" ${worksrcpath}/doc/auto-opts.tpl -} - test.run yes test.target check @@ -41,5 +36,4 @@ livecheck.type regex livecheck.url http://ftp.gnu.org/gnu/${name}/?C=M&O=D -livecheck.regex rel(\[0-9\]+.\[0-9\]+.\[0-9\]+) - +livecheck.regex rel(\\d+(?:\\.\\d+)*)

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[90205] trunk/dports/devel/bmake/Portfile
by cal＠macports.org 26 Feb '12

26 Feb '12

Revision: 90205 http://trac.macports.org/changeset/90205 Author: cal(a)macports.org Date: 2012-02-26 06:58:01 -0800 (Sun, 26 Feb 2012) Log Message: ----------- bmake: UsingTheRightCompiler, openmaintainer Modified Paths: -------------- trunk/dports/devel/bmake/Portfile Modified: trunk/dports/devel/bmake/Portfile =================================================================== --- trunk/dports/devel/bmake/Portfile 2012-02-26 14:42:46 UTC (rev 90204) +++ trunk/dports/devel/bmake/Portfile 2012-02-26 14:58:01 UTC (rev 90205) @@ -27,7 +27,7 @@ use_configure no worksrcdir ${name} build.cmd ./boot-strap -build.args --with-default-sys-path="${prefix}/share/mk" +build.args --with-default-sys-path="${prefix}/share/mk" CC=${configure.cc} build.target destroot {

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[90204] trunk/dports/devel/ocaml-bin-prot/Portfile
by mww＠macports.org 26 Feb '12

26 Feb '12

Revision: 90204 http://trac.macports.org/changeset/90204 Author: mww(a)macports.org Date: 2012-02-26 06:42:46 -0800 (Sun, 26 Feb 2012) Log Message: ----------- ocaml-bin-prot: fix build with gcc -- it does not know -Wno-array-bound Modified Paths: -------------- trunk/dports/devel/ocaml-bin-prot/Portfile Modified: trunk/dports/devel/ocaml-bin-prot/Portfile =================================================================== --- trunk/dports/devel/ocaml-bin-prot/Portfile 2012-02-26 12:56:55 UTC (rev 90203) +++ trunk/dports/devel/ocaml-bin-prot/Portfile 2012-02-26 14:42:46 UTC (rev 90204) @@ -25,7 +25,10 @@ rmd160 fe02221b20f2bb176a2a5e6f293c906470f945ce # remove me if http://caml.inria.fr/mantis/view.php?id=5516 is fixed -patchfiles patch-myocamlbuild.ml.diff +if {${configure.compiler} == "clang"} { + patchfiles-append patch-myocamlbuild.ml.diff +} + post-patch { # deal with C99 semantics of inline if {${configure.compiler} == "clang"} {

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[90203] trunk/dports/devel/ocaml-bin-prot
by mww＠macports.org 26 Feb '12

26 Feb '12

Revision: 90203 http://trac.macports.org/changeset/90203 Author: mww(a)macports.org Date: 2012-02-26 04:56:55 -0800 (Sun, 26 Feb 2012) Log Message: ----------- ocaml-bin-prot: fix compilation with latest clang (C99-semantics of inline, array-out-of-bound hack from OCaml's bigarray.h) Modified Paths: -------------- trunk/dports/devel/ocaml-bin-prot/Portfile Added Paths: ----------- trunk/dports/devel/ocaml-bin-prot/files/ trunk/dports/devel/ocaml-bin-prot/files/patch-myocamlbuild.ml.diff Modified: trunk/dports/devel/ocaml-bin-prot/Portfile =================================================================== --- trunk/dports/devel/ocaml-bin-prot/Portfile 2012-02-26 02:44:44 UTC (rev 90202) +++ trunk/dports/devel/ocaml-bin-prot/Portfile 2012-02-26 12:56:55 UTC (rev 90203) @@ -24,6 +24,16 @@ sha1 5744736b5eb9367633c5fc124d531f6d9d66ee5e \ rmd160 fe02221b20f2bb176a2a5e6f293c906470f945ce +# remove me if http://caml.inria.fr/mantis/view.php?id=5516 is fixed +patchfiles patch-myocamlbuild.ml.diff +post-patch { + # deal with C99 semantics of inline + if {${configure.compiler} == "clang"} { + reinplace "s|inline||g" ${worksrcpath}/lib/common_stubs.c \ + ${worksrcpath}/lib/read_stubs.c ${worksrcpath}/lib/write_stubs.c + } +} + depends_lib port:ocaml port:ocaml-findlib port:ocaml-ounit port:ocaml-type-conv use_configure no @@ -31,6 +41,8 @@ build.env PREFIX=${prefix} +test.run yes + set ocamlfind_destdir ${destroot}${prefix}/lib/ocaml/site-lib destroot.env OCAMLFIND_LDCONF="ignore" \ Added: trunk/dports/devel/ocaml-bin-prot/files/patch-myocamlbuild.ml.diff =================================================================== --- trunk/dports/devel/ocaml-bin-prot/files/patch-myocamlbuild.ml.diff (rev 0) +++ trunk/dports/devel/ocaml-bin-prot/files/patch-myocamlbuild.ml.diff 2012-02-26 12:56:55 UTC (rev 90203) @@ -0,0 +1,10 @@ +--- myocamlbuild.ml 2011-09-01 19:40:11.000000000 +0200 ++++ myocamlbuild.ml 2012-02-26 13:36:34.000000000 +0100 +@@ -512,6 +512,7 @@ + "-Wextra"; + "-Wunused"; + "-Werror"; ++ "-Wno-array-bounds"; (* remove me if http://caml.inria.fr/mantis/view.php?id=5516 is fixed *) + "-Wno-long-long"; + ] + in

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[90202] trunk/dports/science/pynmr/Portfile
by snc＠macports.org 26 Feb '12

26 Feb '12

Revision: 90202 http://trac.macports.org/changeset/90202 Author: snc(a)macports.org Date: 2012-02-25 18:44:44 -0800 (Sat, 25 Feb 2012) Log Message: ----------- pynmr: fixes for pymol 1.4, #29243 Modified Paths: -------------- trunk/dports/science/pynmr/Portfile Modified: trunk/dports/science/pynmr/Portfile =================================================================== --- trunk/dports/science/pynmr/Portfile 2012-02-26 00:09:53 UTC (rev 90201) +++ trunk/dports/science/pynmr/Portfile 2012-02-26 02:44:44 UTC (rev 90202) @@ -2,9 +2,11 @@ # $Id$ PortSystem 1.0 +PortGroup python26 1.0 name pynmr version 0.37f +revision 1 categories science maintainers bromo.med.uc.edu:howarth @@ -38,14 +40,18 @@ post-patch { reinplace "s|@PREFIX@|${prefix}|g" ${build.dir}/run.macos \ ${build.dir}/test_data/test.script + reinplace "s|Numeric import|numpy.oldnumeric import|g" ${build.dir}/SVDSuperimposer.py \ + ${build.dir}/rmsd.py + reinplace "s|LinearAlgebra import|numpy.oldnumeric.linear_algebra import|g" ${build.dir}/SVDSuperimposer.py + reinplace "s|import MLab|import numpy.oldnumeric.mlab as MLab|g" ${build.dir}/rmsd.py } destroot { - xinstall -d ${destroot}${prefix}/lib/pymol/modules/pmg_tk/startup/pynmr - xinstall -m 644 ${worksrcpath}/pmg_tk/startup/plug_nmr.py ${destroot}${prefix}/lib/pymol/modules/pmg_tk/startup - xinstall -m 644 -W ${build.dir} Crmsd.so BIOPYTHON_LICENSE LICENSE README ${destroot}${prefix}/lib/pymol/modules/pmg_tk/startup/pynmr + xinstall -d ${destroot}${python.pkgd}/pmg_tk/startup/pynmr + xinstall -m 644 ${worksrcpath}/pmg_tk/startup/plug_nmr.py ${destroot}${python.pkgd}/pmg_tk/startup + xinstall -m 644 -W ${build.dir} Crmsd.so BIOPYTHON_LICENSE LICENSE README ${destroot}${python.pkgd}/pmg_tk/startup/pynmr foreach d {help images test_data} { - copy ${build.dir}/${d} ${destroot}${prefix}/lib/pymol/modules/pmg_tk/startup/pynmr + copy ${build.dir}/${d} ${destroot}${python.pkgd}/pmg_tk/startup/pynmr } - eval xinstall -m 644 [glob ${build.dir}/*.py] ${destroot}${prefix}/lib/pymol/modules/pmg_tk/startup/pynmr + eval xinstall -m 644 [glob ${build.dir}/*.py] ${destroot}${python.pkgd}/pmg_tk/startup/pynmr }

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[90201] trunk/dports/science/pymol/files/setup_py.diff
by snc＠macports.org 26 Feb '12

26 Feb '12

Revision: 90201 http://trac.macports.org/changeset/90201 Author: snc(a)macports.org Date: 2012-02-25 16:09:53 -0800 (Sat, 25 Feb 2012) Log Message: ----------- pymol: missing patch for r90200 update to 1.5, #33289 Revision Links: -------------- http://trac.macports.org/changeset/90200 Modified Paths: -------------- trunk/dports/science/pymol/files/setup_py.diff Modified: trunk/dports/science/pymol/files/setup_py.diff =================================================================== --- trunk/dports/science/pymol/files/setup_py.diff 2012-02-25 23:51:29 UTC (rev 90200) +++ trunk/dports/science/pymol/files/setup_py.diff 2012-02-26 00:09:53 UTC (rev 90201) @@ -1,41 +1,11 @@ ---- setup.py.orig 2011-07-25 16:38:04.000000000 -0400 -+++ setup.py 2011-07-26 00:00:37.000000000 -0400 -@@ -101,11 +101,10 @@ - # - # REMEMEBER to use "./ext/bin/python ..." - # -- EXT = os.getcwd()+"/ext" +--- setup.py.orig 2012-02-17 13:06:52.000000000 -0500 ++++ setup.py 2012-02-17 20:20:00.000000000 -0500 +@@ -153,7 +153,7 @@ + outputheader.close() + outputfile.close() + +- EXT = "/opt/local" + EXT = "@PREFIX@" inc_dirs=["ov/src", "layer0","layer1","layer2", "layer3","layer4","layer5", -- "/usr/X11R6/include", - EXT+"/include", - EXT+"/include/GL", - EXT+"/include/freetype2", -@@ -118,11 +117,14 @@ - def_macros=[("_PYMOL_MODULE",None), - ("_PYMOL_LIBPNG",None), - ("_PYMOL_FREETYPE",None), -+ ("_PYMOL_INLINE",None), -+ ("_PYMOL_NUMPY",None), -+ ("_PYMOL_OPENGL_SHADERS",None), -+ ("NO_MMLIBS",None), - ] -- ext_comp_args=[] -+ ext_comp_args=["-ffast-math","-funroll-loops","-O3","-fcommon"] - ext_link_args=[ -- "-L/usr/X11R6/lib64", "-lGL", "-lXxf86vm", -- "-L"+EXT+"/lib", "-lpng", "-lglut", "-lfreetype" -+ "-L"+EXT+"/lib", "-lpng", "-lGL", "-lglut", "-lGLEW", "-lfreetype" - ] - #============================================================================ - else: # linux or other unix -@@ -181,6 +183,7 @@ - 'pymol/opengl/glu', - 'pymol/opengl/glut', - 'pymol/wizard', -+ 'pymol2', - 'web', - 'web/examples', - 'web/javascript', ],

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