July 2012 - macports-changes - lists.macosforge.org

[94988] trunk/dports/science
by thibaut＠macports.org 03 Jul '12

03 Jul '12

Revision: 94988 https://trac.macports.org/changeset/94988 Author: thibaut(a)macports.org Date: 2012-07-03 05:23:06 -0700 (Tue, 03 Jul 2012) Log Message: ----------- Gyoto: new port, version 0.0.3; see #34088 Added Paths: ----------- trunk/dports/science/Gyoto/ trunk/dports/science/Gyoto/Portfile Added: trunk/dports/science/Gyoto/Portfile =================================================================== --- trunk/dports/science/Gyoto/Portfile (rev 0) +++ trunk/dports/science/Gyoto/Portfile 2012-07-03 12:23:06 UTC (rev 94988) @@ -0,0 +1,48 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 +PortGroup github 1.0 + +github.setup gyoto Gyoto 0.0.3 +license GPL-3+ +categories science yorick +platforms darwin +maintainers thibaut openmaintainer +description General relativistic geodesic integration and ray-tracing +long_description Gyoto aims at providing a framework for computing orbits \ + and ray-traced images in General relativity. It consists \ + in a C++ shared library (libgyoto), utility programs \ + (gyoto, gyotoy), and a plug-in for the Yorick programming \ + language. Gyoto can be extended with plug-ins. +homepage http://gyoto.obspm.fr + +checksums rmd160 79418d7131c8d6af33c1f30bc86d9f07ce2f376a \ + sha256 f6bbb6e148cdffd5e2482d37f13bfe8ed543918d20e0b803a935dce93760a46d + +depends_lib port:cfitsio \ + port:xercesc3 \ + path:bin/yorick:yorick + +depends_run port:yorick-yutils + +# yorick is not universal +universal_variant no + +configure { + reinplace "s|yorick|${prefix}/bin/yorick|" ${worksrcpath}/local_settings + reinplace "s|/opt/local|${prefix}|" ${worksrcpath}/local_settings + reinplace "s|/usr/local|${prefix}|" ${worksrcpath}/local_settings + reinplace "s|-dynamiclib|-install_name ${prefix}/lib/libgyoto.dylib -dynamiclib|" ${worksrcpath}/local_settings + reinplace "s|g++|${configure.cxx}|" ${worksrcpath}/local_settings + reinplace "s|CPPFLAGS = .*|CPPFLAGS = ${configure.cppflags}|" ${worksrcpath}/local_settings + reinplace "s|LDFLAGS = .*|LDFLAGS = ${configure.ldflags}|" ${worksrcpath}/local_settings + reinplace "s|CXXFLAGS = .*|CXXFLAGS = ${configure.cxxflags}|" ${worksrcpath}/local_settings + reinplace "s| -Wcast-align -Wconversion -Winline \\\\||" ${worksrcpath}/local_settings + reinplace "s| -Wabi -Woverloaded-virtual -Wno-long-long -fPIC||" ${worksrcpath}/local_settings +} + +# parallel builds fail +use_parallel_build no + +build.args-append Y_CFLAGS="${configure.cxxflags}" Y_CPPFLAGS="${configure.cppflags}" CC="${configure.cc}" COPT_DEFAULT="" Y_LDFLAGS="${configure.ldflags}" Property changes on: trunk/dports/science/Gyoto/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native

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[94987] trunk/dports/science/yorick-gl
by thibaut＠macports.org 03 Jul '12

03 Jul '12

Revision: 94987 https://trac.macports.org/changeset/94987 Author: thibaut(a)macports.org Date: 2012-07-03 05:02:15 -0700 (Tue, 03 Jul 2012) Log Message: ----------- * Upstream has moved to github * Pick the latest commit until they tag a release * Remove patches * Don't rely on the configure script, it's plain broken * Use the Right Compiler and flags Modified Paths: -------------- trunk/dports/science/yorick-gl/Portfile Removed Paths: ------------- trunk/dports/science/yorick-gl/files/ Modified: trunk/dports/science/yorick-gl/Portfile =================================================================== --- trunk/dports/science/yorick-gl/Portfile 2012-07-03 11:31:31 UTC (rev 94986) +++ trunk/dports/science/yorick-gl/Portfile 2012-07-03 12:02:15 UTC (rev 94987) @@ -2,10 +2,14 @@ # $Id$ PortSystem 1.0 +PortGroup github 1.0 -name yorick-gl -cvs.date 20100504 -version 1.1.0.cvs${cvs.date} +set udate 20110402 +github.setup dhmunro yorick-gl 1.1.0.git${udate} gl_ +fetch.type git +git.branch cf49a1a822a4bf2ebb05d3210c7bb5cd950b83ba + +license BSD categories science yorick platforms darwin maintainers thibaut openmaintainer @@ -19,18 +23,27 @@ depends_lib port:yorick \ port:mesa -fetch.type cvs -cvs.root :pserver:anonymous@yorick.cvs.sourceforge.net:/cvsroot/yorick -cvs.module ${name} -worksrcdir ${name} +universal_variant no -patchfiles patch-configure \ - patch-Makefile +configure.cmd ${prefix}/bin/yorick +configure.pre_args {} +configure.args -batch make.i -post-patch { - reinplace "s|@PREFIX@|${prefix}|g" ${worksrcpath}/configure +post-configure { + set MakeglFD [open "$worksrcpath/Makegl" "w"] + puts $MakeglFD "PKG_I=\$(YISO_PKG_I) \$(YGL_PKG_I)" + puts $MakeglFD "OBJS=\$(YISO_OBJS) \$(YGL_OBJS)" + puts $MakeglFD "OGLXW=oglx.o" + puts $MakeglFD "D_MESA_PIXMAPS=" + puts $MakeglFD "PKG_DEPLIBS=-lGL -lXext -lX11" + puts $MakeglFD "PKG_CFLAGS=" + puts $MakeglFD "PKG_LDFLAGS=" + puts $MakeglFD "PKG_I_START=yiso3d.i yorgl.i" + puts $MakeglFD "PKG_I_EXTRA=\$(YISO_I) \$(YGL_I)" + close $MakeglFD } -universal_variant no - -configure.args --yorick=${prefix}/bin/yorick +build.args-append CC=${configure.cc} \ + Y_CFLAGS="${configure.cppflags} ${configure.cflags}" \ + Y_LDFLAGS="${configure.ldflags}" \ + COPTS_DEFAULT=""

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[94986] trunk/dports/science/mcl
by jmr＠macports.org 03 Jul '12

03 Jul '12

Revision: 94986 https://trac.macports.org/changeset/94986 Author: jmr(a)macports.org Date: 2012-07-03 04:31:31 -0700 (Tue, 03 Jul 2012) Log Message: ----------- mcl: fix building in C99 mode (#32476) Modified Paths: -------------- trunk/dports/science/mcl/Portfile Added Paths: ----------- trunk/dports/science/mcl/files/ trunk/dports/science/mcl/files/C99.patch Modified: trunk/dports/science/mcl/Portfile =================================================================== --- trunk/dports/science/mcl/Portfile 2012-07-03 11:05:30 UTC (rev 94985) +++ trunk/dports/science/mcl/Portfile 2012-07-03 11:31:31 UTC (rev 94986) @@ -17,4 +17,7 @@ master_sites http://micans.org/mcl/src/ checksums rmd160 f43c64da14ec4316a67d3a9987aecd1bef25298e \ sha256 11fd811a84e340faf1596ee5e1889457c87b4e172aa8b150bda3414f06f093c8 + +patchfiles C99.patch + configure.args --enable-blast --mandir=${prefix}/share/man Added: trunk/dports/science/mcl/files/C99.patch =================================================================== --- trunk/dports/science/mcl/files/C99.patch (rev 0) +++ trunk/dports/science/mcl/files/C99.patch 2012-07-03 11:31:31 UTC (rev 94986) @@ -0,0 +1,55 @@ +--- src/impala/matrix.h.orig 2012-01-05 22:25:14.000000000 +1100 ++++ src/impala/matrix.h 2012-07-03 21:24:32.000000000 +1000 +@@ -789,7 +789,7 @@ enum + mclv* mclgUnionv + ( mclx* mx /* mx->dom_rows used as scratch area */ + , const mclv* dom_cols /* take union over these columns in mx */ +-, const mclv* restrict /* only consider row entries in restrict */ ++, const mclv* restrictrows /* only consider row entries in restrict */ + , mcxenum SCRATCH_STATUS /* if SCRATCH_READY also left SCRATCH_READY */ + , mclv* dst + ) ; +@@ -810,7 +810,7 @@ mclv* mclgUnionv + mclv* mclgUnionv2 /* This one has a const matrix argument, additional scratch */ + ( const mclx* mx + , const mclv* dom_cols +-, const mclv* restrict ++, const mclv* restrictrows + , mcxenum SCRATCH_STATUS + , mclv* dst + , mclv* scratch +--- src/impala/matrix.c.orig 2012-01-07 02:26:46.000000000 +1100 ++++ src/impala/matrix.c 2012-07-03 21:25:56.000000000 +1000 +@@ -1843,18 +1843,18 @@ dim mclxUnaryList + mclv* mclgUnionv + ( mclx* mx + , const mclv* coldom +-, const mclv* restrict ++, const mclv* restrictrows + , mcxenum scratch_STATUS + , mclv* dst + ) +- { return mclgUnionv2(mx, coldom, restrict, scratch_STATUS, dst, mx->dom_rows) ++ { return mclgUnionv2(mx, coldom, restrictrows, scratch_STATUS, dst, mx->dom_rows) + ; } + + + mclv* mclgUnionv2 + ( const mclx* mx + , const mclv* coldom +-, const mclv* restrict ++, const mclv* restrictrows + , mcxenum scratch_STATUS + , mclv* dst + , mclv* scratch +@@ -1899,8 +1899,8 @@ mclv* mclgUnionv2 + ) + continue /* SNH if coldom is subset of mx->dom_cols */ + ; if +- ( restrict +- && 0 > (o_restrict = mclvGetIvpOffset(restrict, idx, o_restrict)) ++ ( restrictrows ++ && 0 > (o_restrict = mclvGetIvpOffset(restrictrows, idx, o_restrict)) + ) + continue /* not found in restriction domain */ +

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[94985] trunk/dports/science/mcl/Portfile
by jmr＠macports.org 03 Jul '12

03 Jul '12

Revision: 94985 https://trac.macports.org/changeset/94985 Author: jmr(a)macports.org Date: 2012-07-03 04:05:30 -0700 (Tue, 03 Jul 2012) Log Message: ----------- mcl: update to 12-068 (preliminary to fixing #32476), set license Modified Paths: -------------- trunk/dports/science/mcl/Portfile Modified: trunk/dports/science/mcl/Portfile =================================================================== --- trunk/dports/science/mcl/Portfile 2012-07-03 09:57:52 UTC (rev 94984) +++ trunk/dports/science/mcl/Portfile 2012-07-03 11:05:30 UTC (rev 94985) @@ -3,16 +3,18 @@ PortSystem 1.0 name mcl -version 08-312 +version 12-068 description MCL - a cluster algorithm for graphs. long_description \ The MCL algorithm is short for the Markov Cluster Algorithm, \ a fast and scalable unsupervised cluster algorithm for graphs \ based on simulation of (stochastic) flow in graphs. maintainers gmail.com:mike.thon -categories science +categories science math +license GPL-3 platforms darwin homepage http://micans.org/mcl/ master_sites http://micans.org/mcl/src/ -checksums md5 bad361f1d091eb89d565a3dbeb0e63a9 +checksums rmd160 f43c64da14ec4316a67d3a9987aecd1bef25298e \ + sha256 11fd811a84e340faf1596ee5e1889457c87b4e172aa8b150bda3414f06f093c8 configure.args --enable-blast --mandir=${prefix}/share/man

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[94984] trunk/dports/science
by jmr＠macports.org 03 Jul '12

03 Jul '12

Revision: 94984 https://trac.macports.org/changeset/94984 Author: jmr(a)macports.org Date: 2012-07-03 02:57:52 -0700 (Tue, 03 Jul 2012) Log Message: ----------- New port: vcellid, GUI for cell-id (#32449) Added Paths: ----------- trunk/dports/science/vcellid/ trunk/dports/science/vcellid/Portfile Added: trunk/dports/science/vcellid/Portfile =================================================================== --- trunk/dports/science/vcellid/Portfile (rev 0) +++ trunk/dports/science/vcellid/Portfile 2012-07-03 09:57:52 UTC (rev 94984) @@ -0,0 +1,31 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 + +name vcellid +version 0.1 +categories science biology +platforms darwin +maintainers fbmc.fcen.uba.ar:abush +description GTK GUI for cell-id +long_description Graphical User Interface for Cell-ID software. +homepage http://sourceforge.net/projects/cell-id +master_sites sourceforge:project/cell-id + +use_zip yes +checksums md5 bb9244c90f995bc46ccbfb9dd1cf93da \ + sha1 170341e4198252a389062ec9ef8b397bee7d2c22 \ + rmd160 48910433b65dc926a68b1fed2d7470d62414b512 + +depends_build port:pkgconfig +depends_lib port:cell-id \ + port:gtkimageview + +post-patch { + reinplace "s|#include \"/usr/local/include/|#include \"|g" ${worksrcpath}/src/main.h +} + +configure.env LIBS=-lgtkimageview + +use_parallel_build no Property changes on: trunk/dports/science/vcellid/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native

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[94983] trunk/dports/mail/vpopmail/Portfile
by mww＠macports.org 03 Jul '12

03 Jul '12

Revision: 94983 https://trac.macports.org/changeset/94983 Author: mww(a)macports.org Date: 2012-07-03 00:46:17 -0700 (Tue, 03 Jul 2012) Log Message: ----------- vpopmail: add license Modified Paths: -------------- trunk/dports/mail/vpopmail/Portfile Modified: trunk/dports/mail/vpopmail/Portfile =================================================================== --- trunk/dports/mail/vpopmail/Portfile 2012-07-03 07:43:09 UTC (rev 94982) +++ trunk/dports/mail/vpopmail/Portfile 2012-07-03 07:46:17 UTC (rev 94983) @@ -6,6 +6,7 @@ name vpopmail version 5.4.25 categories mail +license GPL-2 maintainers yahoo.com:compconsultant platforms darwin

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[94982] trunk/dports/mail/tpop3d/Portfile
by mww＠macports.org 03 Jul '12

03 Jul '12

Revision: 94982 https://trac.macports.org/changeset/94982 Author: mww(a)macports.org Date: 2012-07-03 00:43:09 -0700 (Tue, 03 Jul 2012) Log Message: ----------- tpop3d: add license Modified Paths: -------------- trunk/dports/mail/tpop3d/Portfile Modified: trunk/dports/mail/tpop3d/Portfile =================================================================== --- trunk/dports/mail/tpop3d/Portfile 2012-07-03 07:43:08 UTC (rev 94981) +++ trunk/dports/mail/tpop3d/Portfile 2012-07-03 07:43:09 UTC (rev 94982) @@ -6,6 +6,7 @@ version 1.5.3 revision 3 categories mail +license GPL-2 platforms darwin maintainers nomaintainer description tpop3d is a fast, extensible, secure UNIX POP3 server

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[94981] trunk/dports/perl/p5-locale-gettext/Portfile
by ryandesign＠macports.org 03 Jul '12

03 Jul '12

Revision: 94981 https://trac.macports.org/changeset/94981 Author: ryandesign(a)macports.org Date: 2012-07-03 00:43:08 -0700 (Tue, 03 Jul 2012) Log Message: ----------- p5-locale-gettext: fix build failure following perl5 portgroup change in r94915 (#35058) Revision Links: -------------- https://trac.macports.org/changeset/94915 Modified Paths: -------------- trunk/dports/perl/p5-locale-gettext/Portfile Modified: trunk/dports/perl/p5-locale-gettext/Portfile =================================================================== --- trunk/dports/perl/p5-locale-gettext/Portfile 2012-07-03 07:42:23 UTC (rev 94980) +++ trunk/dports/perl/p5-locale-gettext/Portfile 2012-07-03 07:43:08 UTC (rev 94981) @@ -25,12 +25,6 @@ if {${perl5.major} != ""} { depends_lib-append port:gettext port:libiconv -if {[variant_isset universal]} { - set archflags ${configure.universal_cflags} -} else { - set archflags ${configure.cc_archflags} -} - # The first patch below corrects a typo in the documentation. The last two # correct a bug discovered by the Debian Project; they come from the CPAN RT # ticket tracker (http://rt.cpan.org/Public/Bug/Display.html?id=35680) @@ -46,8 +40,6 @@ configure.compiler llvm-gcc-4.2 } -configure.cc ${configure.cc} ${configure.cflags} ${configure.ldflags} \ - ${archflags} } livecheck.type regex livecheck.url ${homepage}

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[94980] trunk/dports/mail/gnupg12/Portfile
by mww＠macports.org 03 Jul '12

03 Jul '12

Revision: 94980 https://trac.macports.org/changeset/94980 Author: mww(a)macports.org Date: 2012-07-03 00:42:23 -0700 (Tue, 03 Jul 2012) Log Message: ----------- gnupg12: add license Modified Paths: -------------- trunk/dports/mail/gnupg12/Portfile Modified: trunk/dports/mail/gnupg12/Portfile =================================================================== --- trunk/dports/mail/gnupg12/Portfile 2012-07-03 07:41:14 UTC (rev 94979) +++ trunk/dports/mail/gnupg12/Portfile 2012-07-03 07:42:23 UTC (rev 94980) @@ -6,6 +6,7 @@ version 1.2.8 platforms darwin linux categories mail +license GPL-2 description GNU Privacy Guard long_description GnuPG is a complete and free replacement for PGP. \ Because it does not use the patented IDEA algorithm, \

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[94979] trunk/dports/mail/uagen/Portfile
by mww＠macports.org 03 Jul '12

03 Jul '12

Revision: 94979 https://trac.macports.org/changeset/94979 Author: mww(a)macports.org Date: 2012-07-03 00:41:14 -0700 (Tue, 03 Jul 2012) Log Message: ----------- uagen: add license Modified Paths: -------------- trunk/dports/mail/uagen/Portfile Modified: trunk/dports/mail/uagen/Portfile =================================================================== --- trunk/dports/mail/uagen/Portfile 2012-07-03 07:40:04 UTC (rev 94978) +++ trunk/dports/mail/uagen/Portfile 2012-07-03 07:41:14 UTC (rev 94979) @@ -6,6 +6,7 @@ version 1.0.7 revision 1 categories mail +license BSD platforms darwin maintainers nomaintainer description A Firefox-User-Agent generator for Privoxy and Mozilla \

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