March 2015 - macports-changes - lists.macosforge.org

[133490] trunk/dports/graphics/enblend/Portfile
by ryandesign＠macports.org 03 Mar '15

03 Mar '15

Revision: 133490 https://trac.macports.org/changeset/133490 Author: ryandesign(a)macports.org Date: 2015-03-02 22:21:00 -0800 (Mon, 02 Mar 2015) Log Message: ----------- enblend: fix build with texinfo 5 (#41955; maintainer timeout) Modified Paths: -------------- trunk/dports/graphics/enblend/Portfile Modified: trunk/dports/graphics/enblend/Portfile =================================================================== --- trunk/dports/graphics/enblend/Portfile 2015-03-03 05:35:40 UTC (rev 133489) +++ trunk/dports/graphics/enblend/Portfile 2015-03-03 06:21:00 UTC (rev 133490) @@ -45,6 +45,11 @@ --with-gnuplot=${prefix}/bin/gnuplot \ --with-openexr +# Fix build with texinfo 5. +# https://bugs.launchpad.net/enblend/+bug/1181678 +build.args-append MAKEINFO=/usr/bin/true +destroot.args-append MAKEINFO=/usr/bin/true + # The build uses vast amounts of memory per job. use_parallel_build no

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[133489] trunk/dports/science
by ryandesign＠macports.org 03 Mar '15

03 Mar '15

Revision: 133489 https://trac.macports.org/changeset/133489 Author: ryandesign(a)macports.org Date: 2015-03-02 21:35:40 -0800 (Mon, 02 Mar 2015) Log Message: ----------- htslib: new port, version 1.2.1 (#46883) Added Paths: ----------- trunk/dports/science/htslib/ trunk/dports/science/htslib/Portfile Added: trunk/dports/science/htslib/Portfile =================================================================== --- trunk/dports/science/htslib/Portfile (rev 0) +++ trunk/dports/science/htslib/Portfile 2015-03-03 05:35:40 UTC (rev 133489) @@ -0,0 +1,35 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 +PortGroup github 1.0 + +github.setup samtools htslib 1.2.1 +categories science +platforms darwin +maintainers ryandesign openmaintainer +license MIT BSD + +description C library for accessing SAM, CRAM, VCF, BCF and other \ + file formats used for high-throughput sequencing data + +long_description HTSlib is an implementation of a unified C library for \ + accessing common file formats, such as SAM, CRAM, VCF \ + and BCF, used for high-throughput sequencing data. It \ + is the core library used by SAMtools and BCFtools. + +checksums rmd160 573b5a4fce05ec485110ab6206ddbc38d55f4798 \ + sha256 bddb1372b9215b32e0f21d8394bab859c57cb00324a8dc06775cdac5b4d662b0 + +homepage http://www.htslib.org/ +github.tarball_from releases +use_bzip2 yes + +depends_lib port:zlib + +post-destroot { + xinstall -d ${destroot}${prefix}/share/doc/${name} + xinstall -m 644 -W ${worksrcpath} \ + LICENSE NEWS README \ + ${destroot}${prefix}/share/doc/${name} +} Property changes on: trunk/dports/science/htslib/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native

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[133488] trunk/dports/science
by ryandesign＠macports.org 03 Mar '15

03 Mar '15

Revision: 133488 https://trac.macports.org/changeset/133488 Author: ryandesign(a)macports.org Date: 2015-03-02 21:26:41 -0800 (Mon, 02 Mar 2015) Log Message: ----------- bcftools: new port, version 1.2 (#46883) Added Paths: ----------- trunk/dports/science/bcftools/ trunk/dports/science/bcftools/Portfile Added: trunk/dports/science/bcftools/Portfile =================================================================== --- trunk/dports/science/bcftools/Portfile (rev 0) +++ trunk/dports/science/bcftools/Portfile 2015-03-03 05:26:41 UTC (rev 133488) @@ -0,0 +1,43 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 +PortGroup github 1.0 + +github.setup samtools bcftools 1.2 +categories science +platforms darwin +maintainers ryandesign openmaintainer +license {MIT GPL-3} + +description utilities for variant calling and manipulating VCF and \ + BCF files + +long_description BCFtools implements utilities for variant calling (in \ + conjunction with SAMtools) and manipulating VCF and \ + BCF files. The program is intended to replace the \ + Perl-based tools from vcftools. + +checksums rmd160 84be17525ff3106d3193ed262e70edbaf60495f0 \ + sha256 53c628339020dd45334a007c9cefdaf1cba3f1032492ec813b116379fa684fd6 + +homepage http://www.htslib.org/ +github.tarball_from releases +use_bzip2 yes + +depends_lib port:zlib + +use_configure no + +variant universal {} + +build.args CC="${configure.cc} [get_canonical_archflags cc]" + +destroot.args-append prefix=${prefix} + +post-destroot { + xinstall -d ${destroot}${prefix}/share/doc/${name} + xinstall -m 644 -W ${worksrcpath} \ + AUTHORS LICENSE README \ + ${destroot}${prefix}/share/doc/${name} +} Property changes on: trunk/dports/science/bcftools/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native

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[133487] trunk/dports/science/samtools/Portfile
by ryandesign＠macports.org 03 Mar '15

03 Mar '15

Revision: 133487 https://trac.macports.org/changeset/133487 Author: ryandesign(a)macports.org Date: 2015-03-02 21:20:58 -0800 (Mon, 02 Mar 2015) Log Message: ----------- samtools: update to 1.2 (#46883) Modified Paths: -------------- trunk/dports/science/samtools/Portfile Modified: trunk/dports/science/samtools/Portfile =================================================================== --- trunk/dports/science/samtools/Portfile 2015-03-03 03:30:36 UTC (rev 133486) +++ trunk/dports/science/samtools/Portfile 2015-03-03 05:20:58 UTC (rev 133487) @@ -2,9 +2,9 @@ # $Id$ PortSystem 1.0 +PortGroup github 1.0 -name samtools -version 0.1.19 +github.setup samtools samtools 1.2 categories science platforms darwin maintainers gmail.com:haroldpimentel openmaintainer @@ -17,31 +17,30 @@ format, including sorting, merging, indexing and \ generating alignments in a per-position format. -homepage http://samtools.sourceforge.net/ -master_sites sourceforge:project/samtools/samtools/${version} +checksums rmd160 536dcdc1c7730bc4a93f68e39967890331211c24 \ + sha256 420e7a4a107fe37619b9d300b6379452eb8eb04a4a9b65c3ec69de82ccc26daa -checksums rmd160 4e74858d3762f785452d1c9507bd127de9791894 \ - sha256 d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4 - +homepage http://www.htslib.org/ +github.tarball_from releases use_bzip2 yes depends_lib port:zlib port:ncurses use_configure no -configure.cflags-append -std=gnu89 +variant universal {} -build.args CC=${configure.cc} \ - CFLAGS="-g -Wall ${configure.cflags} ${configure.cc_archflags}" +build.args CC="${configure.cc} [get_canonical_archflags cc]" destroot { xinstall -m 755 ${worksrcpath}/samtools ${destroot}${prefix}/bin xinstall -m 644 ${worksrcpath}/libbam.a ${destroot}${prefix}/lib + xinstall -m 644 ${worksrcpath}/samtools.1 ${destroot}${prefix}/share/man/man1 xinstall -d ${destroot}${prefix}/include/bam eval xinstall -m 644 [glob ${worksrcpath}/*.h] ${destroot}${prefix}/include/bam xinstall -d ${destroot}${prefix}/share/doc/${name} xinstall -m 644 -W ${worksrcpath} \ - AUTHORS COPYING NEWS \ + AUTHORS LICENSE NEWS README \ ${destroot}${prefix}/share/doc/${name} }

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[133486] trunk/dports/perl/p5-moo/Portfile
by devans＠macports.org 03 Mar '15

03 Mar '15

Revision: 133486 https://trac.macports.org/changeset/133486 Author: devans(a)macports.org Date: 2015-03-02 19:30:36 -0800 (Mon, 02 Mar 2015) Log Message: ----------- p5-moo: update to version 2.000000, dependencies. Modified Paths: -------------- trunk/dports/perl/p5-moo/Portfile Modified: trunk/dports/perl/p5-moo/Portfile =================================================================== --- trunk/dports/perl/p5-moo/Portfile 2015-03-03 03:29:07 UTC (rev 133485) +++ trunk/dports/perl/p5-moo/Portfile 2015-03-03 03:30:36 UTC (rev 133486) @@ -5,7 +5,7 @@ PortGroup perl5 1.0 perl5.branches 5.16 5.18 5.20 -perl5.setup Moo 1.007000 ../by-authors/id/H/HA/HAARG +perl5.setup Moo 2.000000 ../by-authors/id/H/HA/HAARG platforms darwin maintainers nomaintainer @@ -28,18 +28,18 @@ instead of provide full interoperability via the metaclass \ inflation capabilities described in \"MOO AND MOOSE\". -checksums rmd160 6925afc1cc6560f26468cd767211d373ce1a71fc \ - sha256 c51e0ae6044d00435b284b3e64ddce4d69d262629c1aaa1e4fa1342993363a79 +checksums rmd160 b81cc83abb4a526dc86f6b5919d32027bdc52088 \ + sha256 57a743bba2e51568c83d00eb3b91d76767069b0fb3d06ef5407bb527b8f35de5 if {${perl5.major} != ""} { depends_lib-append \ port:p${perl5.major}-class-method-modifiers \ + port:p${perl5.major}-class-xsaccessor \ port:p${perl5.major}-devel-globaldestruction \ - port:p${perl5.major}-dist-checkconflicts \ - port:p${perl5.major}-import-into \ port:p${perl5.major}-module-runtime \ port:p${perl5.major}-role-tiny \ - port:p${perl5.major}-strictures + port:p${perl5.major}-scalar-list-utils + depends_build-append \ port:p${perl5.major}-test-fatal }

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[133485] trunk/dports/perl/p5-test-cleannamespaces/Portfile
by devans＠macports.org 03 Mar '15

03 Mar '15

Revision: 133485 https://trac.macports.org/changeset/133485 Author: devans(a)macports.org Date: 2015-03-02 19:29:07 -0800 (Mon, 02 Mar 2015) Log Message: ----------- p5-test-cleannamespaces: remove optional test dependency to avoid circular dependency in p5-moo. Modified Paths: -------------- trunk/dports/perl/p5-test-cleannamespaces/Portfile Modified: trunk/dports/perl/p5-test-cleannamespaces/Portfile =================================================================== --- trunk/dports/perl/p5-test-cleannamespaces/Portfile 2015-03-03 03:27:53 UTC (rev 133484) +++ trunk/dports/perl/p5-test-cleannamespaces/Portfile 2015-03-03 03:29:07 UTC (rev 133485) @@ -25,7 +25,6 @@ if {${perl5.major} != ""} { depends_build-append \ port:p${perl5.major}-module-implementation \ - port:p${perl5.major}-moo \ port:p${perl5.major}-test-deep \ port:p${perl5.major}-test-requires \ port:p${perl5.major}-test-simple \

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[133484] trunk/dports/perl/p5-datemanip/Portfile
by devans＠macports.org 03 Mar '15

03 Mar '15

Revision: 133484 https://trac.macports.org/changeset/133484 Author: devans(a)macports.org Date: 2015-03-02 19:27:53 -0800 (Mon, 02 Mar 2015) Log Message: ----------- p5-datemanip: update to version 6.49. Modified Paths: -------------- trunk/dports/perl/p5-datemanip/Portfile Modified: trunk/dports/perl/p5-datemanip/Portfile =================================================================== --- trunk/dports/perl/p5-datemanip/Portfile 2015-03-03 03:04:32 UTC (rev 133483) +++ trunk/dports/perl/p5-datemanip/Portfile 2015-03-03 03:27:53 UTC (rev 133484) @@ -6,7 +6,7 @@ name p5-datemanip perl5.branches 5.16 5.18 5.20 -perl5.setup Date-Manip 6.48 Date +perl5.setup Date-Manip 6.49 Date platforms darwin maintainers nomaintainer @@ -20,8 +20,8 @@ amount of time from another, or parsing international \ times are all easily done. -checksums rmd160 32d7846d9000c0574997626189b79b981170bec7 \ - sha256 4d6eb2707729313fd10658468741eb9337853f0fe0e6e594a219dc0d3029b4d6 +checksums rmd160 1f8a5ac065188bfc81493921d2107172295a66b3 \ + sha256 3e5aa3b351f92186630c27b1de2cba0d322142d0ff4ac12319681e20ce8b89b9 if {${perl5.major} != ""} { depends_build-append \

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[133483] trunk/dports/php/php-http2/Portfile
by ryandesign＠macports.org 03 Mar '15

03 Mar '15

Revision: 133483 https://trac.macports.org/changeset/133483 Author: ryandesign(a)macports.org Date: 2015-03-02 19:04:32 -0800 (Mon, 02 Mar 2015) Log Message: ----------- php-http2: update to 2.3.1 Modified Paths: -------------- trunk/dports/php/php-http2/Portfile Modified: trunk/dports/php/php-http2/Portfile =================================================================== --- trunk/dports/php/php-http2/Portfile 2015-03-03 03:02:46 UTC (rev 133482) +++ trunk/dports/php/php-http2/Portfile 2015-03-03 03:04:32 UTC (rev 133483) @@ -5,7 +5,7 @@ PortGroup php 1.1 name php-http2 -version 2.3.0 +version 2.3.1 categories php www platforms darwin maintainers ryandesign openmaintainer @@ -33,8 +33,8 @@ dist_subdir php5-http -checksums rmd160 ef37ce7002cf7e34e2b617b417e755a5ee003eb9 \ - sha256 17056b0ba286359a84dd09b3034bc4b41defcae61451c671bb80bc1a17ef7ae9 +checksums rmd160 c571738363b8afb3e7efd50d5298d55d1deab14f \ + sha256 a017199a9b552d3d471f0d86aab7d8fa5234a5bf1608dfe2ace4f80d1d4b6bf3 if {${name} ne ${subport}} { conflicts ${php}-http

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[133482] trunk/dports/sysutils/libvirt/Portfile
by ryandesign＠macports.org 03 Mar '15

03 Mar '15

Revision: 133482 https://trac.macports.org/changeset/133482 Author: ryandesign(a)macports.org Date: 2015-03-02 19:02:46 -0800 (Mon, 02 Mar 2015) Log Message: ----------- libvirt: update to 1.2.13 Modified Paths: -------------- trunk/dports/sysutils/libvirt/Portfile Modified: trunk/dports/sysutils/libvirt/Portfile =================================================================== --- trunk/dports/sysutils/libvirt/Portfile 2015-03-03 03:00:39 UTC (rev 133481) +++ trunk/dports/sysutils/libvirt/Portfile 2015-03-03 03:02:46 UTC (rev 133482) @@ -4,7 +4,7 @@ PortSystem 1.0 name libvirt -version 1.2.12 +version 1.2.13 categories sysutils license LGPL-2.1+ platforms darwin @@ -18,8 +18,8 @@ homepage http://www.libvirt.org/ master_sites ${homepage}sources/ -checksums rmd160 2b8ffd285a7fea1b291252499ef786c343e102b0 \ - sha256 eff5227f774560d97f0b44402a444e821c51e8cd44add89f74bc3c1f4dede66a +checksums rmd160 13e7073d8b60ff0d302d1eaeb699a1a3b7358c90 \ + sha256 944163d93949db61f49eace85838b1bd55ce855e88b014df16c50fd2102bdaf6 depends_build port:pkgconfig \ port:xhtml1

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[133481] trunk/dports/net/youtube-dl/Portfile
by ryandesign＠macports.org 03 Mar '15

03 Mar '15

Revision: 133481 https://trac.macports.org/changeset/133481 Author: ryandesign(a)macports.org Date: 2015-03-02 19:00:39 -0800 (Mon, 02 Mar 2015) Log Message: ----------- youtube-dl: update to 2015.03.03 Modified Paths: -------------- trunk/dports/net/youtube-dl/Portfile Modified: trunk/dports/net/youtube-dl/Portfile =================================================================== --- trunk/dports/net/youtube-dl/Portfile 2015-03-03 02:57:48 UTC (rev 133480) +++ trunk/dports/net/youtube-dl/Portfile 2015-03-03 03:00:39 UTC (rev 133481) @@ -4,7 +4,7 @@ PortSystem 1.0 name youtube-dl -version 2015.02.28 +version 2015.03.03 categories net platforms darwin maintainers ryandesign openmaintainer @@ -18,8 +18,8 @@ homepage http://rg3.github.com/youtube-dl/ master_sites http://youtube-dl.org/downloads/${version} -checksums rmd160 de01b0853898fdc363d824e8dbc650bc782dbf8c \ - sha256 ac45afc0115399361807d502c3227f257882950ff650d00a73e071d60cb36a25 +checksums rmd160 6b8e4c8aabfb68550356660d022e6dee590d8eae \ + sha256 5b13395af4460e362c1b877d71fac1eb1a76d9eebc8da479dd4783f801c3c276 depends_build bin:zip:zip

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