Revision: 108663 https://trac.macports.org/changeset/108663 Author: mmoll@macports.org Date: 2013-07-29 20:28:46 -0700 (Mon, 29 Jul 2013) Log Message: ----------- science/hdf5-18: update to 1.8.11, rev. bump all ports that depend on it, since hdf5-18 is very particular about versions when reading hdf5 files even if the dylib version hasn't changed. closes #39893 Modified Paths: -------------- trunk/dports/archivers/blosc/Portfile trunk/dports/devel/lua-numlua/Portfile trunk/dports/gis/gdal/Portfile trunk/dports/graphics/field3d/Portfile trunk/dports/graphics/vigra/Portfile trunk/dports/math/gnudatalanguage/Portfile trunk/dports/math/octave/Portfile trunk/dports/math/octave-devel/Portfile trunk/dports/math/petsc/Portfile trunk/dports/math/shogun/Portfile trunk/dports/perl/p5-pdl/Portfile trunk/dports/python/py-h5py/Portfile trunk/dports/python/py-stfio/Portfile trunk/dports/python/py-tables/Portfile trunk/dports/science/H5Part/Portfile trunk/dports/science/alps/Portfile trunk/dports/science/armadillo/Portfile trunk/dports/science/bob/Portfile trunk/dports/science/cdo/Portfile trunk/dports/science/flann/Portfile trunk/dports/science/h4h5tools/Portfile trunk/dports/science/h5utils/Portfile trunk/dports/science/hdf5-18/Portfile trunk/dports/science/hdfeos5/Portfile trunk/dports/science/nco/Portfile trunk/dports/science/ncview/Portfile trunk/dports/science/netcdf/Portfile trunk/dports/science/netcdf-cxx/Portfile trunk/dports/science/netcdf-cxx4/Portfile trunk/dports/science/netcdf-fortran/Portfile trunk/dports/science/silo/Portfile trunk/dports/science/splash/Portfile trunk/dports/science/stimfit/Portfile trunk/dports/science/swarm/Portfile trunk/dports/science/vapor/Portfile trunk/dports/science/wgrib2/Portfile trunk/dports/science/yorick-hdf5/Portfile Modified: trunk/dports/archivers/blosc/Portfile =================================================================== --- trunk/dports/archivers/blosc/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/archivers/blosc/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,7 +6,7 @@ name blosc version 1.2.3 -revision 0 +revision 1 categories archivers devel platforms darwin license MIT Modified: trunk/dports/devel/lua-numlua/Portfile =================================================================== --- trunk/dports/devel/lua-numlua/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/devel/lua-numlua/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -4,7 +4,7 @@ PortGroup github 1.0 github.setup carvalho numlua 0.3 -revision 1 +revision 2 name lua-numlua license MIT categories devel Modified: trunk/dports/gis/gdal/Portfile =================================================================== --- trunk/dports/gis/gdal/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/gis/gdal/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name gdal version 1.10.0 -revision 1 +revision 2 categories gis license MIT BSD platforms darwin Modified: trunk/dports/graphics/field3d/Portfile =================================================================== --- trunk/dports/graphics/field3d/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/graphics/field3d/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,7 +6,7 @@ github.setup imageworks Field3D 1.3.2 v name field3d -revision 1 +revision 2 categories graphics maintainers blair license BSD Modified: trunk/dports/graphics/vigra/Portfile =================================================================== --- trunk/dports/graphics/vigra/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/graphics/vigra/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name vigra version 1.8.0 -revision 4 +revision 5 categories graphics platforms darwin maintainers gmail.com:benjamin.seppke Modified: trunk/dports/math/gnudatalanguage/Portfile =================================================================== --- trunk/dports/math/gnudatalanguage/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/math/gnudatalanguage/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,7 +6,7 @@ name gnudatalanguage version 0.9.3 -revision 1 +revision 2 epoch 1 categories math science maintainers takeshi Modified: trunk/dports/math/octave/Portfile =================================================================== --- trunk/dports/math/octave/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/math/octave/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name octave version 3.2.4 -revision 13 +revision 14 conflicts octave-devel categories math science license GPL-3+ Modified: trunk/dports/math/octave-devel/Portfile =================================================================== --- trunk/dports/math/octave-devel/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/math/octave-devel/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,7 +6,7 @@ name octave-devel version 3.6.4 -revision 5 +revision 6 conflicts octave categories math science maintainers michaelld openmaintainer Modified: trunk/dports/math/petsc/Portfile =================================================================== --- trunk/dports/math/petsc/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/math/petsc/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,7 +6,7 @@ name petsc version 3.3-p6 -revision 1 +revision 2 categories math science maintainers mmoll description Portable, Extensible Toolkit for Scientific Computation Modified: trunk/dports/math/shogun/Portfile =================================================================== --- trunk/dports/math/shogun/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/math/shogun/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,7 +6,7 @@ name shogun version 2.1.0 set branch [join [lrange [split ${version} .] 0 1] .] -revision 1 +revision 2 categories-append science platforms darwin license GPL-3 Modified: trunk/dports/perl/p5-pdl/Portfile =================================================================== --- trunk/dports/perl/p5-pdl/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/perl/p5-pdl/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,6 +6,7 @@ perl5.branches 5.8 5.10 5.12 5.14 5.16 perl5.setup PDL 2.4.11 +revision 1 maintainers saao.ac.za:tim license Artistic GPL-2 description Perl Data Language - scientific computing capability for perl Modified: trunk/dports/python/py-h5py/Portfile =================================================================== --- trunk/dports/python/py-h5py/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/python/py-h5py/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,6 +6,7 @@ name py-h5py version 2.1.3 +revision 1 # h5py needs to be re-built after hdf5-18 upgrades revision 0 Modified: trunk/dports/python/py-stfio/Portfile =================================================================== --- trunk/dports/python/py-stfio/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/python/py-stfio/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,6 +6,7 @@ name py-stfio version 0.12.4 +revision 1 categories python science platforms darwin license GPL-2 Modified: trunk/dports/python/py-tables/Portfile =================================================================== --- trunk/dports/python/py-tables/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/python/py-tables/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -7,7 +7,7 @@ set realname tables name py-${realname} version 3.0.0 -revision 0 +revision 1 categories-append science platforms darwin license BSD Modified: trunk/dports/science/H5Part/Portfile =================================================================== --- trunk/dports/science/H5Part/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/H5Part/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name H5Part version 1.6.6 -revision 1 +revision 2 categories science maintainers lbl.gov:ghweber license BSD Modified: trunk/dports/science/alps/Portfile =================================================================== --- trunk/dports/science/alps/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/alps/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -7,7 +7,7 @@ name alps version 2.1.1 -revision 2 +revision 3 categories science platforms darwin maintainers gmail.com:gamperl Modified: trunk/dports/science/armadillo/Portfile =================================================================== --- trunk/dports/science/armadillo/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/armadillo/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,7 +6,7 @@ name armadillo version 3.4.0 -revision 1 +revision 2 categories science platforms darwin maintainers gmail.com:christian.frisson openmaintainer Modified: trunk/dports/science/bob/Portfile =================================================================== --- trunk/dports/science/bob/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/bob/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -7,6 +7,7 @@ PortGroup active_variants 1.1 github.setup idiap bob 1.2.0 v +revision 1 set soversion 1.2 categories science math devel platforms darwin Modified: trunk/dports/science/cdo/Portfile =================================================================== --- trunk/dports/science/cdo/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/cdo/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,6 +5,7 @@ name cdo version 1.6.1 +revision 1 platforms darwin maintainers takeshi license GPL-2 Modified: trunk/dports/science/flann/Portfile =================================================================== --- trunk/dports/science/flann/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/flann/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name flann version 1.8.4 -revision 2 +revision 3 categories science devel maintainers mmoll description Fast Library for Approximate Nearest Neighbors Modified: trunk/dports/science/h4h5tools/Portfile =================================================================== --- trunk/dports/science/h4h5tools/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/h4h5tools/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -4,7 +4,7 @@ name h4h5tools version 2.2.1 -revision 1 +revision 2 categories science platforms darwin maintainers dal.ca:tom.duck openmaintainer Modified: trunk/dports/science/h5utils/Portfile =================================================================== --- trunk/dports/science/h5utils/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/h5utils/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name h5utils version 1.12.1 -revision 2 +revision 3 categories science platforms darwin maintainers ece.pdx.edu:higginja Modified: trunk/dports/science/hdf5-18/Portfile =================================================================== --- trunk/dports/science/hdf5-18/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/hdf5-18/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -7,8 +7,8 @@ set realname hdf5 name ${realname}-18 -version 1.8.10 -revision 1 +version 1.8.11 +revision 0 categories science maintainers mmoll openmaintainer @@ -30,8 +30,9 @@ ftp://ftp.hdfgroup.org/HDF5/current/src/ \ ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-${version}/src/ checksums \ - rmd160 78fe33ae4205068f7bddeb98f0e7a2c77310b651 \ - sha256 fa6e6b37b7976edac860732b87c50370e3beba3ae784d05f16f298c033a45a44 + rmd160 32786b19dd7356eecc95848d66e8e0843298ccbb \ + sha256 5ea1ba82fc77350ee628b795ae6ede05feeaf1c6b437911a9478de456600cafb + distname ${realname}-${version} use_bzip2 yes depends_lib port:zlib @@ -72,6 +73,12 @@ } } +post-destroot { + xinstall -d ${destroot}${prefix}/share/hdf5/ + xinstall -m 444 ${worksrcpath}/COPYING\ + ${destroot}${prefix}/share/hdf5/ +} + test.run yes test.target check @@ -119,10 +126,10 @@ configure.args-append --enable-threadsafe --with-pthread } -if {[ variant_isset threadsafe ] && ([ variant_isset cxx] || - [ variant_isset fortran]) || - ([ variant_isset mpich ] || [ variant_isset openmpi ]) && - ([ variant_isset cxx ] || [ variant_isset threadsafe ]) } { +if {[ variant_isset threadsafe ] && ([ variant_isset cxx ] || + [ variant_isset fortran ]) || + ([ variant_isset mpich ] || [ variant_isset openmpi ]) && + ([ variant_isset cxx ] || [ variant_isset threadsafe ]) } { # Tell hdf5-18 to configure in this experimental configuration configure.args-append --enable-unsupported Modified: trunk/dports/science/hdfeos5/Portfile =================================================================== --- trunk/dports/science/hdfeos5/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/hdfeos5/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,7 +6,7 @@ name hdfeos5 version 1.14 -revision 3 +revision 4 categories science platforms darwin license public-domain Modified: trunk/dports/science/nco/Portfile =================================================================== --- trunk/dports/science/nco/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/nco/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name nco version 4.3.3 -revision 1 +revision 2 platforms darwin maintainers takeshi license GPL-3 Modified: trunk/dports/science/ncview/Portfile =================================================================== --- trunk/dports/science/ncview/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/ncview/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name ncview version 2.1.1 -revision 1 +revision 2 maintainers nomaintainer platforms darwin categories science Modified: trunk/dports/science/netcdf/Portfile =================================================================== --- trunk/dports/science/netcdf/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/netcdf/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -7,7 +7,7 @@ name netcdf epoch 2 version 4.2.1.1 -revision 2 +revision 3 maintainers takeshi openmaintainer platforms darwin categories science Modified: trunk/dports/science/netcdf-cxx/Portfile =================================================================== --- trunk/dports/science/netcdf-cxx/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/netcdf-cxx/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name netcdf-cxx version 4.2 -revision 2 +revision 3 distname ${name}-${version} maintainers takeshi openmaintainer platforms darwin Modified: trunk/dports/science/netcdf-cxx4/Portfile =================================================================== --- trunk/dports/science/netcdf-cxx4/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/netcdf-cxx4/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name netcdf-cxx4 version 4.2 -revision 1 +revision 2 distname ${name}-${version} maintainers takeshi openmaintainer platforms darwin Modified: trunk/dports/science/netcdf-fortran/Portfile =================================================================== --- trunk/dports/science/netcdf-fortran/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/netcdf-fortran/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,7 +6,7 @@ name netcdf-fortran version 4.2 -revision 7 +revision 8 maintainers takeshi openmaintainer platforms darwin categories science Modified: trunk/dports/science/silo/Portfile =================================================================== --- trunk/dports/science/silo/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/silo/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,6 +5,7 @@ name silo version 4.9 +revision 1 categories science platforms darwin maintainers nomaintainer Modified: trunk/dports/science/splash/Portfile =================================================================== --- trunk/dports/science/splash/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/splash/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,6 +5,7 @@ name splash version 2.2.2 +revision 1 categories science graphics platforms darwin maintainers monash.edu:daniel.price Modified: trunk/dports/science/stimfit/Portfile =================================================================== --- trunk/dports/science/stimfit/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/stimfit/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,6 +5,7 @@ name stimfit version 0.12.4 +revision 1 categories science platforms darwin license GPL-2 Modified: trunk/dports/science/swarm/Portfile =================================================================== --- trunk/dports/science/swarm/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/swarm/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name swarm version 2.4.1 -revision 3 +revision 4 categories science maintainers nomaintainer license GPL-2 Modified: trunk/dports/science/vapor/Portfile =================================================================== --- trunk/dports/science/vapor/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/vapor/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -4,7 +4,7 @@ PortSystem 1.0 name vapor version 1.5.2 -revision 2 +revision 3 categories science maintainers takeshi description interactive 3D scientific visualization environment Modified: trunk/dports/science/wgrib2/Portfile =================================================================== --- trunk/dports/science/wgrib2/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/wgrib2/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -5,7 +5,7 @@ name wgrib2 version 1.9.8 -revision 1 +revision 2 platforms darwin maintainers takeshi license public-domain Modified: trunk/dports/science/yorick-hdf5/Portfile =================================================================== --- trunk/dports/science/yorick-hdf5/Portfile 2013-07-30 01:05:55 UTC (rev 108662) +++ trunk/dports/science/yorick-hdf5/Portfile 2013-07-30 03:28:46 UTC (rev 108663) @@ -6,7 +6,7 @@ set uname hdf5 github.setup frigaut yorick-${uname} 0.8.0 -revision 1 +revision 2 license GPL-2+ categories science yorick platforms darwin