[108663] trunk/dports

30 Jul 2013

Revision: 108663
          https://trac.macports.org/changeset/108663
Author:   mmoll@macports.org
Date:     2013-07-29 20:28:46 -0700 (Mon, 29 Jul 2013)
Log Message:
-----------
science/hdf5-18: update to 1.8.11, rev. bump all ports that depend on it, since hdf5-18 is very particular about versions when reading hdf5 files even if the dylib version hasn't changed. closes #39893

Modified Paths:
--------------
    trunk/dports/archivers/blosc/Portfile
    trunk/dports/devel/lua-numlua/Portfile
    trunk/dports/gis/gdal/Portfile
    trunk/dports/graphics/field3d/Portfile
    trunk/dports/graphics/vigra/Portfile
    trunk/dports/math/gnudatalanguage/Portfile
    trunk/dports/math/octave/Portfile
    trunk/dports/math/octave-devel/Portfile
    trunk/dports/math/petsc/Portfile
    trunk/dports/math/shogun/Portfile
    trunk/dports/perl/p5-pdl/Portfile
    trunk/dports/python/py-h5py/Portfile
    trunk/dports/python/py-stfio/Portfile
    trunk/dports/python/py-tables/Portfile
    trunk/dports/science/H5Part/Portfile
    trunk/dports/science/alps/Portfile
    trunk/dports/science/armadillo/Portfile
    trunk/dports/science/bob/Portfile
    trunk/dports/science/cdo/Portfile
    trunk/dports/science/flann/Portfile
    trunk/dports/science/h4h5tools/Portfile
    trunk/dports/science/h5utils/Portfile
    trunk/dports/science/hdf5-18/Portfile
    trunk/dports/science/hdfeos5/Portfile
    trunk/dports/science/nco/Portfile
    trunk/dports/science/ncview/Portfile
    trunk/dports/science/netcdf/Portfile
    trunk/dports/science/netcdf-cxx/Portfile
    trunk/dports/science/netcdf-cxx4/Portfile
    trunk/dports/science/netcdf-fortran/Portfile
    trunk/dports/science/silo/Portfile
    trunk/dports/science/splash/Portfile
    trunk/dports/science/stimfit/Portfile
    trunk/dports/science/swarm/Portfile
    trunk/dports/science/vapor/Portfile
    trunk/dports/science/wgrib2/Portfile
    trunk/dports/science/yorick-hdf5/Portfile

Modified: trunk/dports/archivers/blosc/Portfile
===================================================================

--- trunk/dports/archivers/blosc/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/archivers/blosc/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
 
 name                blosc
 version             1.2.3
-revision            0
+revision            1
 categories          archivers devel
 platforms           darwin
 license             MIT

Modified: trunk/dports/devel/lua-numlua/Portfile
===================================================================
--- trunk/dports/devel/lua-numlua/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/devel/lua-numlua/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -4,7 +4,7 @@
 PortGroup               github  1.0
 
 github.setup            carvalho numlua 0.3
-revision                1
+revision                2
 name                    lua-numlua
 license                 MIT
 categories              devel

Modified: trunk/dports/gis/gdal/Portfile
===================================================================
--- trunk/dports/gis/gdal/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/gis/gdal/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                gdal
 version             1.10.0
-revision            1
+revision            2
 categories          gis
 license             MIT BSD
 platforms           darwin

Modified: trunk/dports/graphics/field3d/Portfile
===================================================================
--- trunk/dports/graphics/field3d/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/graphics/field3d/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
 
 github.setup            imageworks Field3D 1.3.2 v
 name                    field3d
-revision                1
+revision                2
 categories              graphics
 maintainers             blair
 license                 BSD

Modified: trunk/dports/graphics/vigra/Portfile
===================================================================
--- trunk/dports/graphics/vigra/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/graphics/vigra/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                vigra
 version             1.8.0
-revision            4
+revision            5
 categories          graphics
 platforms           darwin
 maintainers         gmail.com:benjamin.seppke

Modified: trunk/dports/math/gnudatalanguage/Portfile
===================================================================
--- trunk/dports/math/gnudatalanguage/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/math/gnudatalanguage/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
 
 name                        gnudatalanguage
 version                     0.9.3
-revision                    1
+revision                    2
 epoch                       1
 categories                  math science
 maintainers                 takeshi

Modified: trunk/dports/math/octave/Portfile
===================================================================
--- trunk/dports/math/octave/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/math/octave/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                octave
 version             3.2.4
-revision            13
+revision            14
 conflicts           octave-devel
 categories          math science
 license             GPL-3+

Modified: trunk/dports/math/octave-devel/Portfile
===================================================================
--- trunk/dports/math/octave-devel/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/math/octave-devel/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
 
 name                octave-devel
 version             3.6.4
-revision            5
+revision            6
 conflicts           octave
 categories          math science
 maintainers         michaelld openmaintainer

Modified: trunk/dports/math/petsc/Portfile
===================================================================
--- trunk/dports/math/petsc/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/math/petsc/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
 
 name		petsc
 version     3.3-p6
-revision    1
+revision    2
 categories  math science
 maintainers	mmoll
 description	Portable, Extensible Toolkit for Scientific Computation

Modified: trunk/dports/math/shogun/Portfile
===================================================================
--- trunk/dports/math/shogun/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/math/shogun/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
 name                shogun
 version             2.1.0
 set branch          [join [lrange [split ${version} .] 0 1] .]
-revision            1
+revision            2
 categories-append   science
 platforms           darwin
 license             GPL-3

Modified: trunk/dports/perl/p5-pdl/Portfile
===================================================================
--- trunk/dports/perl/p5-pdl/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/perl/p5-pdl/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,6 +6,7 @@
 
 perl5.branches      5.8 5.10 5.12 5.14 5.16
 perl5.setup         PDL 2.4.11
+revision            1
 maintainers         saao.ac.za:tim
 license             Artistic GPL-2
 description         Perl Data Language - scientific computing capability for perl

Modified: trunk/dports/python/py-h5py/Portfile
===================================================================
--- trunk/dports/python/py-h5py/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/python/py-h5py/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,6 +6,7 @@
 
 name                py-h5py
 version             2.1.3
+revision            1
 
 # h5py needs to be re-built after hdf5-18 upgrades
 revision            0

Modified: trunk/dports/python/py-stfio/Portfile
===================================================================
--- trunk/dports/python/py-stfio/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/python/py-stfio/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,6 +6,7 @@
 
 name                py-stfio
 version             0.12.4
+revision            1
 categories          python science
 platforms           darwin
 license             GPL-2

Modified: trunk/dports/python/py-tables/Portfile
===================================================================
--- trunk/dports/python/py-tables/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/python/py-tables/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -7,7 +7,7 @@
 set realname        tables
 name                py-${realname}
 version             3.0.0
-revision            0
+revision            1
 categories-append   science
 platforms           darwin
 license             BSD

Modified: trunk/dports/science/H5Part/Portfile
===================================================================
--- trunk/dports/science/H5Part/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/H5Part/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                H5Part
 version             1.6.6
-revision            1
+revision            2
 categories          science
 maintainers         lbl.gov:ghweber
 license             BSD

Modified: trunk/dports/science/alps/Portfile
===================================================================
--- trunk/dports/science/alps/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/alps/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -7,7 +7,7 @@
 
 name                    alps
 version                 2.1.1
-revision                2
+revision                3
 categories              science
 platforms               darwin
 maintainers             gmail.com:gamperl

Modified: trunk/dports/science/armadillo/Portfile
===================================================================
--- trunk/dports/science/armadillo/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/armadillo/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
 
 name                            armadillo
 version                         3.4.0
-revision                        1
+revision                        2
 categories                      science
 platforms                       darwin
 maintainers                     gmail.com:christian.frisson openmaintainer

Modified: trunk/dports/science/bob/Portfile
===================================================================
--- trunk/dports/science/bob/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/bob/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -7,6 +7,7 @@
 PortGroup           active_variants 1.1
 
 github.setup        idiap bob 1.2.0 v
+revision            1
 set soversion       1.2
 categories          science math devel
 platforms           darwin

Modified: trunk/dports/science/cdo/Portfile
===================================================================
--- trunk/dports/science/cdo/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/cdo/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,6 +5,7 @@
 
 name                        cdo
 version                     1.6.1
+revision                    1
 platforms                   darwin
 maintainers                 takeshi
 license                     GPL-2

Modified: trunk/dports/science/flann/Portfile
===================================================================
--- trunk/dports/science/flann/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/flann/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                flann
 version             1.8.4
-revision            2
+revision            3
 categories          science devel
 maintainers         mmoll
 description         Fast Library for Approximate Nearest Neighbors

Modified: trunk/dports/science/h4h5tools/Portfile
===================================================================
--- trunk/dports/science/h4h5tools/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/h4h5tools/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -4,7 +4,7 @@
 
 name			h4h5tools
 version			2.2.1
-revision    1
+revision    2
 categories		science
 platforms		darwin
 maintainers		dal.ca:tom.duck openmaintainer

Modified: trunk/dports/science/h5utils/Portfile
===================================================================
--- trunk/dports/science/h5utils/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/h5utils/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                h5utils
 version             1.12.1
-revision            2
+revision            3
 categories          science
 platforms           darwin
 maintainers         ece.pdx.edu:higginja

Modified: trunk/dports/science/hdf5-18/Portfile
===================================================================
--- trunk/dports/science/hdf5-18/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/hdf5-18/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -7,8 +7,8 @@
 
 set realname        hdf5
 name                ${realname}-18
-version             1.8.10
-revision            1
+version             1.8.11
+revision            0
 categories          science
 maintainers         mmoll openmaintainer
 
@@ -30,8 +30,9 @@
     ftp://ftp.hdfgroup.org/HDF5/current/src/ \
     ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-${version}/src/
 checksums \
-    rmd160  78fe33ae4205068f7bddeb98f0e7a2c77310b651 \
-    sha256  fa6e6b37b7976edac860732b87c50370e3beba3ae784d05f16f298c033a45a44
+    rmd160  32786b19dd7356eecc95848d66e8e0843298ccbb \
+    sha256  5ea1ba82fc77350ee628b795ae6ede05feeaf1c6b437911a9478de456600cafb
+
 distname            ${realname}-${version}
 use_bzip2           yes
 depends_lib         port:zlib
@@ -72,6 +73,12 @@
     }
 }
 
+post-destroot {
+    xinstall -d ${destroot}${prefix}/share/hdf5/
+    xinstall -m 444 ${worksrcpath}/COPYING\
+      ${destroot}${prefix}/share/hdf5/
+}
+
 test.run            yes
 test.target         check
 
@@ -119,10 +126,10 @@
     configure.args-append       --enable-threadsafe --with-pthread
 }
 
-if {[ variant_isset threadsafe ] && ([ variant_isset cxx] ||
-                                     [ variant_isset fortran]) ||
-    ([ variant_isset mpich ] || [ variant_isset openmpi ]) &&
-    ([ variant_isset cxx ]    || [ variant_isset threadsafe ])  } {
+if {[ variant_isset threadsafe ] && ([ variant_isset cxx ] ||
+                                     [ variant_isset fortran ]) ||
+    ([ variant_isset mpich ] || [ variant_isset openmpi ])  &&
+    ([ variant_isset cxx ]   || [ variant_isset threadsafe ])  } {
     
     # Tell hdf5-18 to configure in this experimental configuration
     configure.args-append       --enable-unsupported

Modified: trunk/dports/science/hdfeos5/Portfile
===================================================================
--- trunk/dports/science/hdfeos5/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/hdfeos5/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
 
 name                hdfeos5
 version             1.14
-revision            3
+revision            4
 categories          science
 platforms           darwin
 license             public-domain

Modified: trunk/dports/science/nco/Portfile
===================================================================
--- trunk/dports/science/nco/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/nco/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                nco
 version             4.3.3
-revision            1
+revision            2
 platforms           darwin
 maintainers         takeshi
 license             GPL-3

Modified: trunk/dports/science/ncview/Portfile
===================================================================
--- trunk/dports/science/ncview/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/ncview/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                    ncview
 version                 2.1.1
-revision                1
+revision                2
 maintainers             nomaintainer
 platforms               darwin
 categories              science

Modified: trunk/dports/science/netcdf/Portfile
===================================================================
--- trunk/dports/science/netcdf/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/netcdf/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -7,7 +7,7 @@
 name                        netcdf
 epoch                       2
 version                     4.2.1.1
-revision                    2
+revision                    3
 maintainers                 takeshi openmaintainer
 platforms                   darwin
 categories                  science

Modified: trunk/dports/science/netcdf-cxx/Portfile
===================================================================
--- trunk/dports/science/netcdf-cxx/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/netcdf-cxx/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                        netcdf-cxx
 version                     4.2
-revision                    2
+revision                    3
 distname                    ${name}-${version}
 maintainers                 takeshi openmaintainer
 platforms                   darwin

Modified: trunk/dports/science/netcdf-cxx4/Portfile
===================================================================
--- trunk/dports/science/netcdf-cxx4/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/netcdf-cxx4/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                        netcdf-cxx4
 version                     4.2
-revision                    1
+revision                    2
 distname                    ${name}-${version}
 maintainers                 takeshi openmaintainer
 platforms                   darwin

Modified: trunk/dports/science/netcdf-fortran/Portfile
===================================================================
--- trunk/dports/science/netcdf-fortran/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/netcdf-fortran/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
 
 name                        netcdf-fortran
 version                     4.2
-revision                    7
+revision                    8
 maintainers                 takeshi openmaintainer
 platforms                   darwin
 categories                  science

Modified: trunk/dports/science/silo/Portfile
===================================================================
--- trunk/dports/science/silo/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/silo/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,6 +5,7 @@
 
 name                silo
 version             4.9
+revision            1
 categories          science
 platforms           darwin
 maintainers         nomaintainer

Modified: trunk/dports/science/splash/Portfile
===================================================================
--- trunk/dports/science/splash/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/splash/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,6 +5,7 @@
 
 name                splash
 version             2.2.2
+revision            1
 categories          science graphics
 platforms           darwin
 maintainers         monash.edu:daniel.price

Modified: trunk/dports/science/stimfit/Portfile
===================================================================
--- trunk/dports/science/stimfit/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/stimfit/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,6 +5,7 @@
 
 name                stimfit
 version             0.12.4
+revision            1
 categories          science
 platforms           darwin
 license             GPL-2

Modified: trunk/dports/science/swarm/Portfile
===================================================================
--- trunk/dports/science/swarm/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/swarm/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                swarm
 version             2.4.1
-revision            3
+revision            4
 categories          science
 maintainers         nomaintainer
 license             GPL-2

Modified: trunk/dports/science/vapor/Portfile
===================================================================
--- trunk/dports/science/vapor/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/vapor/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -4,7 +4,7 @@
 PortSystem          1.0
 name                vapor
 version             1.5.2
-revision            2
+revision            3
 categories          science
 maintainers         takeshi
 description         interactive 3D scientific visualization environment

Modified: trunk/dports/science/wgrib2/Portfile
===================================================================
--- trunk/dports/science/wgrib2/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/wgrib2/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
 
 name                wgrib2
 version             1.9.8
-revision            1
+revision            2
 platforms           darwin
 maintainers         takeshi
 license             public-domain

Modified: trunk/dports/science/yorick-hdf5/Portfile
===================================================================
--- trunk/dports/science/yorick-hdf5/Portfile	2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/yorick-hdf5/Portfile	2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
 
 set uname           hdf5
 github.setup        frigaut yorick-${uname} 0.8.0
-revision            1
+revision            2
 license             GPL-2+
 categories          science yorick
 platforms           darwin

    

[108663] trunk/dports

mmoll＠macports.org