Revision: 96041 https://trac.macports.org/changeset/96041 Author: jmr@macports.org Date: 2012-07-30 01:40:14 -0700 (Mon, 30 Jul 2012) Log Message: ----------- New port: exonerate (#33346) Added Paths: ----------- trunk/dports/science/exonerate/ trunk/dports/science/exonerate/Portfile trunk/dports/science/exonerate/files/ trunk/dports/science/exonerate/files/patch-src-program-Makefile.am.diff trunk/dports/science/exonerate/files/patch-src-program-Makefile.in.diff Added: trunk/dports/science/exonerate/Portfile =================================================================== --- trunk/dports/science/exonerate/Portfile (rev 0) +++ trunk/dports/science/exonerate/Portfile 2012-07-30 08:40:14 UTC (rev 96041) @@ -0,0 +1,36 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 + +name exonerate +version 2.2.0 +categories science +platforms darwin +maintainers sanger.ac.uk:mg13 +license GPL-3 + +description A generic tool for sequence alignment + +long_description Exonerate is a generic tool for pairwise sequence \ + comparison. It allows you to align sequences using \ + many alignment models, using either exhaustive \ + dynamic programming, or a variety of heuristics. + +homepage http://www.ebi.ac.uk/~guy/exonerate/ +master_sites ${homepage} + +checksums rmd160 3441a642c75af8b5676253b020f47650360ba320 \ + sha256 0ea2720b1388fa329f889522f43029b416ae311f57b229129a65e779616fe5ff + +patchfiles patch-src-program-Makefile.am.diff \ + patch-src-program-Makefile.in.diff + +depends_lib port:glib2 +depends_build port:pkgconfig + +# sadly the code generation & compilation is unreliable unless... + +use_parallel_build no + +# EOF Property changes on: trunk/dports/science/exonerate/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native Added: trunk/dports/science/exonerate/files/patch-src-program-Makefile.am.diff =================================================================== --- trunk/dports/science/exonerate/files/patch-src-program-Makefile.am.diff (rev 0) +++ trunk/dports/science/exonerate/files/patch-src-program-Makefile.am.diff 2012-07-30 08:40:14 UTC (rev 96041) @@ -0,0 +1,15 @@ +diff -ur ../exonerate-2.2.0.orig/src/program/Makefile.am ./src/program/Makefile.am +--- ../exonerate-2.2.0.orig/src/program/Makefile.am 2008-02-08 17:35:36.000000000 +0000 ++++ ./src/program/Makefile.am 2012-02-23 16:31:14.000000000 +0000 +@@ -67,9 +67,9 @@ + BUILT_SOURCES = c4_model_archive.a + BOOTSTRAPPER = $(top_srcdir)/src/model/bootstrapper + c4_model_archive.h: $(BOOTSTRAPPER) +- $(BOOTSTRAPPER) --compiled no ++ CFLAGS="$(CFLAGS)" $(BOOTSTRAPPER) --compiled no + c4_model_archive.a: $(BOOTSTRAPPER) +- $(BOOTSTRAPPER) --compiled no ++ CFLAGS="$(CFLAGS)" $(BOOTSTRAPPER) --compiled no + + # Special viterbi.o and scheduler.o for compiled model linking + viterbi.o: $(top_srcdir)/src/c4/viterbi.c Added: trunk/dports/science/exonerate/files/patch-src-program-Makefile.in.diff =================================================================== --- trunk/dports/science/exonerate/files/patch-src-program-Makefile.in.diff (rev 0) +++ trunk/dports/science/exonerate/files/patch-src-program-Makefile.in.diff 2012-07-30 08:40:14 UTC (rev 96041) @@ -0,0 +1,14 @@ +--- ../exonerate-2.2.0.orig/src/program/Makefile.in 2008-10-17 11:04:45.000000000 +0100 ++++ ./src/program/Makefile.in 2012-02-24 11:53:57.000000000 +0000 +@@ -361,9 +361,9 @@ + mostlyclean distclean maintainer-clean + + c4_model_archive.h: $(BOOTSTRAPPER) +- $(BOOTSTRAPPER) --compiled no ++ CFLAGS="$(CFLAGS)" $(BOOTSTRAPPER) --compiled no + c4_model_archive.a: $(BOOTSTRAPPER) +- $(BOOTSTRAPPER) --compiled no ++ CFLAGS="$(CFLAGS)" $(BOOTSTRAPPER) --compiled no + + # Special viterbi.o and scheduler.o for compiled model linking + viterbi.o: $(top_srcdir)/src/c4/viterbi.c