Revision: 94916 https://trac.macports.org/changeset/94916 Author: jmr@macports.org Date: 2012-07-02 04:56:23 -0700 (Mon, 02 Jul 2012) Log Message: ----------- New port: cell-id, Microscopy based cytometry segmentation software (#32448) Added Paths: ----------- trunk/dports/science/cell-id/ trunk/dports/science/cell-id/Portfile Added: trunk/dports/science/cell-id/Portfile =================================================================== --- trunk/dports/science/cell-id/Portfile (rev 0) +++ trunk/dports/science/cell-id/Portfile 2012-07-02 11:56:23 UTC (rev 94916) @@ -0,0 +1,54 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 + +name cell-id +version 1.4.6 +categories science biology +license LGPL-2.1+ +platforms darwin +maintainers fbmc.fcen.uba.ar:abush +description Microscopy based cytometry segmentation software +long_description Cell-ID is a command line software that segments bright field \ + microscopy images of yeast and mammalian cells, tracks cells \ + over time and quantifies morphological and fluorescence \ + features for each cell. +homepage http://sourceforge.net/projects/cell-id +master_sites sourceforge:project/cell-id +distname cell_id_${version} +use_zip yes + +checksums md5 add16051f92ff4b95ba73619cfd33036 \ + sha1 d3e67b45af06d136b137ac2fca1a529e0f5f803b \ + rmd160 1406f30acdd62d87f1135eaa5b8e791663237c70 + +depends_lib port:glib2 \ + port:tiff + +post-patch { + reinplace "s|-static|${configure.cflags} ${configure.cc_archflags}|g" ${worksrcpath}/Makefile + reinplace "s|-I/local|-I${prefix}|g" ${worksrcpath}/Makefile + reinplace "s|-L/local/lib|-I${prefix}/lib/glib-2.0/include -L${prefix}/lib|g" ${worksrcpath}/Makefile + reinplace "s|rm cell|rm -f cell|g" ${worksrcpath}/Makefile + reinplace "s|gcc|\$(CC)|g" ${worksrcpath}/Makefile +} + +use_configure no + +pre-build { + system -W ${worksrcpath} "${build.cmd} clean" +} + +build.target cell +build.env CC="${configure.cc}" +use_parallel_build no + +destroot { + xinstall ${worksrcpath}/cell ${destroot}${prefix}/bin/cell + xinstall -d ${destroot}${prefix}/share/doc/${name} + xinstall -m 644 -W ${worksrcpath} Cell-ID-help.txt GNU_Lesser_General_Public_License.txt \ + README.txt cell_id_description_of_output_file_R.txt \ + cell_id_description_of_output_files_PAW.txt parameters.txt \ + ${destroot}${prefix}/share/doc/${name} +} Property changes on: trunk/dports/science/cell-id/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native