Revision: 133487 https://trac.macports.org/changeset/133487 Author: ryandesign@macports.org Date: 2015-03-02 21:20:58 -0800 (Mon, 02 Mar 2015) Log Message: ----------- samtools: update to 1.2 (#46883) Modified Paths: -------------- trunk/dports/science/samtools/Portfile Modified: trunk/dports/science/samtools/Portfile =================================================================== --- trunk/dports/science/samtools/Portfile 2015-03-03 03:30:36 UTC (rev 133486) +++ trunk/dports/science/samtools/Portfile 2015-03-03 05:20:58 UTC (rev 133487) @@ -2,9 +2,9 @@ # $Id$ PortSystem 1.0 +PortGroup github 1.0 -name samtools -version 0.1.19 +github.setup samtools samtools 1.2 categories science platforms darwin maintainers gmail.com:haroldpimentel openmaintainer @@ -17,31 +17,30 @@ format, including sorting, merging, indexing and \ generating alignments in a per-position format. -homepage http://samtools.sourceforge.net/ -master_sites sourceforge:project/samtools/samtools/${version} +checksums rmd160 536dcdc1c7730bc4a93f68e39967890331211c24 \ + sha256 420e7a4a107fe37619b9d300b6379452eb8eb04a4a9b65c3ec69de82ccc26daa -checksums rmd160 4e74858d3762f785452d1c9507bd127de9791894 \ - sha256 d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4 - +homepage http://www.htslib.org/ +github.tarball_from releases use_bzip2 yes depends_lib port:zlib port:ncurses use_configure no -configure.cflags-append -std=gnu89 +variant universal {} -build.args CC=${configure.cc} \ - CFLAGS="-g -Wall ${configure.cflags} ${configure.cc_archflags}" +build.args CC="${configure.cc} [get_canonical_archflags cc]" destroot { xinstall -m 755 ${worksrcpath}/samtools ${destroot}${prefix}/bin xinstall -m 644 ${worksrcpath}/libbam.a ${destroot}${prefix}/lib + xinstall -m 644 ${worksrcpath}/samtools.1 ${destroot}${prefix}/share/man/man1 xinstall -d ${destroot}${prefix}/include/bam eval xinstall -m 644 [glob ${worksrcpath}/*.h] ${destroot}${prefix}/include/bam xinstall -d ${destroot}${prefix}/share/doc/${name} xinstall -m 644 -W ${worksrcpath} \ - AUTHORS COPYING NEWS \ + AUTHORS LICENSE NEWS README \ ${destroot}${prefix}/share/doc/${name} }