Added: trunk/dports/science/tophat/Portfile (0 => 72870)
--- trunk/dports/science/tophat/Portfile (rev 0)
+++ trunk/dports/science/tophat/Portfile 2010-10-29 07:09:11 UTC (rev 72870)
@@ -0,0 +1,32 @@
+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
+# $Id$
+
+PortSystem 1.0
+
+name tophat
+version 1.1.1
+categories science biology
+platforms darwin
+maintainers gmail.com:haroldpimentel
+
+description a fast splice junction mapper for RNA-Seq reads
+
+long_description TopHat is ${description}. It aligns RNA-Seq reads to \
+ mammalian-sized genomes using the ultra high-throughput \
+ short read aligner Bowtie, and then analyzes the mapping \
+ results to identify splice junctions between exons.
+
+homepage http://tophat.cbcb.umd.edu/
+master_sites ${homepage}downloads/
+
+checksums sha1 4671094ce142820ed2d4ba8a57eb787e215d2d3e \
+ rmd160 b758a9f9d8e758a146ecac4dc21db9d154fb3faf
+
+use_parallel_build no
+
+depends_lib port:zlib \
+ port:samtools \
+ port:bowtie
+
+# samtools and bowtie are not universal
+universal_variant no
Property changes on: trunk/dports/science/tophat/Portfile
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