Revision: 100324 https://trac.macports.org/changeset/100324 Author: ryandesign@macports.org Date: 2012-12-08 02:39:19 -0800 (Sat, 08 Dec 2012) Log Message: ----------- prc: new port, version 1.5.6 (#37182) Added Paths: ----------- trunk/dports/math/prc/ trunk/dports/math/prc/Portfile trunk/dports/math/prc/files/ trunk/dports/math/prc/files/patch-Makefile.in.diff trunk/dports/math/prc/files/patch-configure.diff Added: trunk/dports/math/prc/Portfile =================================================================== --- trunk/dports/math/prc/Portfile (rev 0) +++ trunk/dports/math/prc/Portfile 2012-12-08 10:39:19 UTC (rev 100324) @@ -0,0 +1,57 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 + +name prc +version 1.5.6 +categories math science +platforms darwin +maintainers ryandesign openmaintainer +license GPL-2+ + +description program for aligning and scoring two profile hidden \ + Markov models + +long_description PRC is a stand-alone program for aligning and scoring two \ + profile hidden Markov models. This can be used to detect \ + remote relationships between profiles more effectively \ + than by doing simple profile-sequence comparisons. \ + PRC takes into account all transition and emission \ + probabilities in both hidden Markov models. \ + PRC can read SAM, HMMER, PSI-BLAST and FASTA files. + +homepage http://supfam.mrc-lmb.cam.ac.uk/PRC/ +master_sites ${homepage}programs/PRC-${version} + +extract.suffix .tgz +distfiles ${name}-${version}-src${extract.suffix} + +checksums rmd160 1a79a72cf7329a6cb4433d2cf67c4ce123f1b605 \ + sha256 2ad9dcd0621a7262b5754426a62cd630dfbf14b04481fde116fa169d89249394 + +patchfiles patch-configure.diff \ + patch-Makefile.in.diff + +destroot { + xinstall -W ${worksrcpath} \ + convert_to_prc \ + merge_aligns.pl \ + prc \ + ${destroot}${prefix}/bin + + set docdir ${prefix}/share/doc/${name} + xinstall -d ${destroot}${docdir} + xinstall -W ${worksrcpath} -m 644 \ + COPYING \ + LICENSE \ + README \ + ${destroot}${docdir} + + xinstall -d ${destroot}${prefix}/share/examples + copy ${worksrcpath}/example ${destroot}${prefix}/share/examples/${name} +} + +livecheck.type regex +livecheck.url ${homepage}programs/ +livecheck.regex PRC-(\[0-9.\]+)/ Property changes on: trunk/dports/math/prc/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native Added: trunk/dports/math/prc/files/patch-Makefile.in.diff =================================================================== --- trunk/dports/math/prc/files/patch-Makefile.in.diff (rev 0) +++ trunk/dports/math/prc/files/patch-Makefile.in.diff 2012-12-08 10:39:19 UTC (rev 100324) @@ -0,0 +1,11 @@ +--- Makefile.in.orig 2009-07-07 14:58:30.000000000 -0500 ++++ Makefile.in 2012-12-02 03:37:37.000000000 -0600 +@@ -6,7 +6,7 @@ + -DPROF_HMM_TRANS=PLAN9 \ + -DPAIR_HMM_STATES=SPACE5 \ + -DPAIR_HMM_TRANS=ALL_TRANS +-LIBS = @LIBS@ ++LIBS = @LIBS@ @LDFLAGS@ + + + # assorted variables Added: trunk/dports/math/prc/files/patch-configure.diff =================================================================== --- trunk/dports/math/prc/files/patch-configure.diff (rev 0) +++ trunk/dports/math/prc/files/patch-configure.diff 2012-12-08 10:39:19 UTC (rev 100324) @@ -0,0 +1,10 @@ +--- configure.orig 2009-07-07 12:04:33.000000000 -0500 ++++ configure 2012-12-02 03:29:19.000000000 -0600 +@@ -1357,7 +1357,6 @@ + ;; + esac + else +- CFLAGS="-O3 -Wall -Werror" + case "${host}" in + alpha* ) + CFLAGS="${CFLAGS} -mieee"