Revision: 72867 http://trac.macports.org/changeset/72867 Author: ryandesign@macports.org Date: 2010-10-29 00:00:48 -0700 (Fri, 29 Oct 2010) Log Message: ----------- bowtie: new port, version 0.12.7; see #26990 Added Paths: ----------- trunk/dports/science/bowtie/ trunk/dports/science/bowtie/Portfile Added: trunk/dports/science/bowtie/Portfile =================================================================== --- trunk/dports/science/bowtie/Portfile (rev 0) +++ trunk/dports/science/bowtie/Portfile 2010-10-29 07:00:48 UTC (rev 72867) @@ -0,0 +1,54 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 + +name bowtie +version 0.12.7 +categories science biology +platforms darwin +maintainers gmail.com:haroldpimentel +license Artistic + +description an ultrafast, memory-efficient short read aligner + +long_description Bowtie is ${description}. It aligns short DNA sequences \ + (reads) to the human genome at a rate of over 25 million \ + 35-bp reads per hour. Bowtie indexes the genome with a \ + Burrows-Wheeler index to keep its memory footprint small: \ + typically about 2.2 GB for the human genome (2.9 GB for \ + paired-end). + +homepage http://bowtie-bio.sourceforge.net/ +master_sites sourceforge:bowtie-bio +use_zip yes +extract.suffix -src${extract.suffix} + +checksums sha1 0eb752db072a2da6fc6dac55d2ab825422e994ce \ + rmd160 7b2210d4526c4818936b729b0e68f4c13a101fc6 + +use_configure no + +build.target allall + +destroot { + xinstall -W ${worksrcpath} \ + bowtie \ + bowtie-debug \ + bowtie-build \ + bowtie-build-debug \ + bowtie-inspect \ + bowtie-inspect-debug \ + ${destroot}${prefix}/bin + + xinstall -d ${destroot}${prefix}/share/doc/${name} + xinstall -m 644 -W ${worksrcpath} \ + AUTHORS \ + COPYING \ + MANUAL \ + NEWS \ + TUTORIAL \ + VERSION \ + MANUAL.markdown \ + ${destroot}${prefix}/share/doc/${name} +} Property changes on: trunk/dports/science/bowtie/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native