Revision: 61028 http://trac.macports.org/changeset/61028 Author: jmr@macports.org Date: 2009-11-29 23:42:11 -0800 (Sun, 29 Nov 2009) Log Message: ----------- New port: relax (#22230) Added Paths: ----------- trunk/dports/science/relax/ trunk/dports/science/relax/Portfile trunk/dports/science/relax/files/ trunk/dports/science/relax/files/relax.patch trunk/dports/science/relax/files/sample.patch Added: trunk/dports/science/relax/Portfile =================================================================== --- trunk/dports/science/relax/Portfile (rev 0) +++ trunk/dports/science/relax/Portfile 2009-11-30 07:42:11 UTC (rev 61028) @@ -0,0 +1,43 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 +PortGroup python26 1.0 + +name relax +version 1.3.4 +categories science python +maintainers bromo.med.uc.edu:howarth +description Protein dynamics by NMR relax. data analysis +long_description The program relax is designed for the study of the \ + dynamics of proteins or other macromolecules though the \ + analysis of NMR relaxation data. +homepage http://www.nmr-relax.com/ +platforms darwin +master_sites http://download.gna.org/relax/ +distfiles ${name}-${version}.src.tar.bz2 +dist_subdir ${name} +checksums md5 421d92a998bfd359678d689e2f65fc62 \ + sha1 fb5a7b1533b10d358c141cfbf0a267deb502affb \ + rmd160 2ba248402c3e0e0efaf00ac61696965ff316a0d0 +use_bzip2 yes +depends_lib port:scons port:py26-minfx port:py26-scientific +patchfiles relax.patch sample.patch +post-patch { + reinplace "s|@DEST_ROOT@|${destroot}|g" ${worksrcpath}/scons/install.py \ + ${worksrcpath}/sconstruct + reinplace "s|@PREFIX@|${prefix}|g" ${worksrcpath}/scons/install.py \ + ${worksrcpath}/sconstruct \ + ${worksrcpath}/relax +} +build.cmd ${prefix}/bin/scons +build.target +destroot.cmd ${build.cmd} +destroot.destdir DESTDIR=${destroot} +post-destroot { + reinplace "s|${destroot}${prefix}|${prefix}|g" ${destroot}${prefix}/lib/relax/sconstruct + ln -sf ${prefix}/lib/relax/relax ${destroot}${prefix}/bin/relax + file delete -force ${destroot}${prefix}/lib/relax/version.pyc + eval file delete -force [glob -directory ${destroot}${prefix}/lib/relax/scons/ *.pyc] + system "${python.bin} -O ${python.libdir}/compileall.py -d ${prefix}/lib/relax ${destroot}${prefix}/lib/relax" +} Property changes on: trunk/dports/science/relax/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native Added: trunk/dports/science/relax/files/relax.patch =================================================================== --- trunk/dports/science/relax/files/relax.patch (rev 0) +++ trunk/dports/science/relax/files/relax.patch 2009-11-30 07:42:11 UTC (rev 61028) @@ -0,0 +1,60 @@ +--- relax.orig 2007-02-19 00:36:06.000000000 -0500 ++++ relax 2008-08-11 02:13:30.000000000 -0400 +@@ -1,4 +1,4 @@ +-#! /usr/bin/env python ++#!@PREFIX@/bin/python2.6 + + ############################################################################### + # # +--- scons/install.py.orig 2008-08-10 15:31:01.000000000 -0400 ++++ scons/install.py 2008-08-10 16:01:22.000000000 -0400 +@@ -112,8 +112,8 @@ + ############### + + # Run relax to create the *.pyc files. +- print "\nRunning relax to create the byte-compiled *.pyc files." +- system(env['SYMLINK'] + " --test") ++ # print "\nRunning relax to create the byte-compiled *.pyc files." ++ # system(env['SYMLINK'] + " --test") + + # Final print out. + print "\n\n\n" +--- sconstruct.orig 2007-02-19 00:36:06.000000000 -0500 ++++ sconstruct 2008-08-11 02:02:56.000000000 -0400 +@@ -94,7 +94,7 @@ + SYS = SYSTEM + + # Mac OS X installation path. +- INSTALL_PATH = sys.prefix + sep + 'local' ++ INSTALL_PATH = '@DEST_ROOT@@PREFIX@' + sep + 'lib' + + + # All other operating systems. +@@ -111,16 +111,15 @@ + ############### + + # Relax installation directory. +-RELAX_PATH = INSTALL_PATH + sep + 'relax' ++RELAX_PATH = INSTALL_PATH + sep + 'relax' + + # Installation path for binaries. +-BIN_PATH = INSTALL_PATH + sep + 'bin' ++BIN_PATH = '@DEST_ROOT@@PREFIX@' + sep + 'bin' + + # Symbolic link installation path. + SYMLINK = BIN_PATH + sep + 'relax' + + +- + # The distribution files. + ######################### + +@@ -486,7 +485,7 @@ + + # Catch Mac OS X and send the correct command line options to the linker (these may become redundant as SCons improves). + if env['PLATFORM'] == 'darwin': +- env.Append(LINKFLAGS = ['-bundle', '-bundle_loader', sys.prefix + path.sep + 'bin' + path.sep + 'python', '-dynamic']) ++ env.Append(LINKFLAGS = ['-bundle', '-bundle_loader', sys.prefix + path.sep + 'bin' + path.sep + 'python2.6', '-dynamic', '-undefined', 'dynamic_lookup']) + env['SHLINKFLAGS'] = SCons.Util.CLVar('$LINKFLAGS') + env['SHLIBSUFFIX'] = '.so' + Added: trunk/dports/science/relax/files/sample.patch =================================================================== --- trunk/dports/science/relax/files/sample.patch (rev 0) +++ trunk/dports/science/relax/files/sample.patch 2009-11-30 07:42:11 UTC (rev 61028) @@ -0,0 +1,29 @@ +--- sample_scripts/relax_curve_diff.py.org 2009-10-30 21:42:35.000000000 -0400 ++++ sample_scripts/relax_curve_diff.py 2009-10-30 21:43:11.000000000 -0400 +@@ -62,7 +62,7 @@ + cdp = pipes.get_pipe() + + # Loop over the spins. +- for spin in spin_loop() ++ for spin in spin_loop(): + # Skip deselected spins. + if not spin.select: + continue +@@ -106,7 +106,7 @@ + ################################### + + # Loop over the spins. +- for spin in spin_loop() ++ for spin in spin_loop(): + # Skip deselected spins. + if not spin.select: + continue +@@ -132,7 +132,7 @@ + #################################### + + # Loop over the spins. +- for spin in spin_loop() ++ for spin in spin_loop(): + # Skip deselected spins. + if not spin.select: + continue