Revision: 72789 http://trac.macports.org/changeset/72789 Author: ryandesign@macports.org Date: 2010-10-26 15:28:44 -0700 (Tue, 26 Oct 2010) Log Message: ----------- cufflinks: new port, version 0.9.1, see #26999 Added Paths: ----------- trunk/dports/science/cufflinks/ trunk/dports/science/cufflinks/Portfile Added: trunk/dports/science/cufflinks/Portfile =================================================================== --- trunk/dports/science/cufflinks/Portfile (rev 0) +++ trunk/dports/science/cufflinks/Portfile 2010-10-26 22:28:44 UTC (rev 72789) @@ -0,0 +1,42 @@ +# $Id$ + +PortSystem 1.0 + +name cufflinks +version 0.9.1 +categories science biology +platforms darwin +maintainers gmail.com:haroldpimentel +license Boost + +description Cufflinks assembles transcripts, estimates their abundances,\ + and tests for differential expression and regulation in RNA-Seq samples. + +long_description Cufflinks assembles transcripts, estimates their abundances, \ + and tests for differential expression and regulation in RNA-Seq \ + samples. It accepts aligned RNA-Seq reads and assembles the \ + alignments into a parsimonious set of transcripts. \ + Cufflinks then estimates the relative abundances of these \ + transcripts based on how many reads support each one. + +homepage http://cufflinks.cbcb.umd.edu/ +master_sites ${homepage}downloads + +checksums sha1 172398c87bd5fb55ccea1d545769990e94a17e1e\ + rmd160 9933360dd3b8fb32072a11521ec6d8be2077970b + +depends_lib port:zlib \ + port:samtools \ + port:boost + +# samtools is not universal +universal_variant no + +post-destroot { + xinstall -d ${destroot}${prefix}/share/doc/${name} + xinstall -m 644 -W ${worksrcpath} \ + AUTHORS \ + LICENSE \ + README \ + ${destroot}${prefix}/share/doc/${name} +} Property changes on: trunk/dports/science/cufflinks/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native