[83327] trunk/dports/science/bali-phy

29 Aug 2011

Revision: 83327
          http://trac.macports.org/changeset/83327
Author:   adfernandes@macports.org
Date:     2011-08-29 13:33:48 -0700 (Mon, 29 Aug 2011)
Log Message:
-----------
science/bali-phi: trivial update to 2.1.1

Modified Paths:
--------------
    trunk/dports/science/bali-phy/Portfile
    trunk/dports/science/bali-phy/files/configure.patch

Modified: trunk/dports/science/bali-phy/Portfile
===================================================================

--- trunk/dports/science/bali-phy/Portfile	2011-08-29 19:52:06 UTC (rev 83326)
+++ trunk/dports/science/bali-phy/Portfile	2011-08-29 20:33:48 UTC (rev 83327)
@@ -3,7 +3,7 @@
 PortSystem 1.0
 
 name                bali-phy
-version             2.1.0
+version             2.1.1
 revision            1
 description         Bayesian Alignment and Phylogeny estimation
 long_description    BAli-Phy can estimate phylogenetic trees from sequence data when the alignment \
@@ -18,7 +18,7 @@
 homepage            http://www.biomath.ucla.edu/msuchard/bali-phy/
 
 master_sites        ${homepage}
-checksums           sha1 0fd83d876d2ef1d0f2676c14ad10ff93621a8530
+checksums           sha1 e72073a1c5b05c797668e476bfd8517594f074e6
 
 patchfiles          configure.patch scripts.patch src-tools-draw-tree.patch
 
@@ -26,6 +26,7 @@
 depends_build       port:pkgconfig
 
 configure.args      --with-system-boost --enable-cairo
+configure.env       CFLAGS=-DBOOST_FILESYSTEM_VERSION=2 CXXFLAGS=-DBOOST_FILESYSTEM_VERSION=2
 
 variant no_cairo description {disable drawing routines} {
     depends_lib-delete      path:lib/pkgconfig/cairo.pc:cairo

Modified: trunk/dports/science/bali-phy/files/configure.patch
===================================================================
--- trunk/dports/science/bali-phy/files/configure.patch	2011-08-29 19:52:06 UTC (rev 83326)
+++ trunk/dports/science/bali-phy/files/configure.patch	2011-08-29 20:33:48 UTC (rev 83327)
@@ -1,6 +1,6 @@
---- configure	2010-07-30 14:20:13.000000000 -0400
-+++ configure	2010-07-30 14:20:22.000000000 -0400
-@@ -6299,7 +6299,7 @@
+--- configure.orig	2011-08-29 16:13:55.000000000 -0400
++++ configure	2011-08-29 16:19:39.000000000 -0400
+@@ -6466,7 +6466,7 @@
    $as_echo_n "(cached) " >&6
  else
    ac_check_lib_save_LIBS=$LIBS
@@ -9,7 +9,7 @@
  cat confdefs.h - <<_ACEOF >conftest.$ac_ext
  /* end confdefs.h.  */
  
-@@ -6330,13 +6330,13 @@
+@@ -6496,10 +6496,10 @@
  #define `$as_echo "HAVE_LIBboost_filesystem${BOOST_SUFFIX}" | $as_tr_cpp` 1
  _ACEOF
  
@@ -21,12 +21,17 @@
 +  echo "Error: I can't find the boost_filesystem library! (-lboost_filesystem${BOOST_SUFFIX} -lboost_system${BOOST_SUFFIX})" ; exit 1
  fi
  
+ if test "$use_mpi" != no ; then
+@@ -6591,7 +6591,7 @@
+ 
+ fi
+ 
 -boost_libs="-lboost_program_options${BOOST_SUFFIX} -lboost_filesystem${BOOST_SUFFIX}";
 +boost_libs="-lboost_program_options${BOOST_SUFFIX} -lboost_filesystem${BOOST_SUFFIX} -lboost_system${BOOST_SUFFIX}";
  
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking include/compile/link for the BOOST program_options library" >&5
- $as_echo_n "checking include/compile/link for the BOOST program_options library... " >&6; }
-@@ -6397,7 +6397,7 @@
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking include/compile/link for the BOOST.program_options library" >&5
+ $as_echo_n "checking include/compile/link for the BOOST.program_options library... " >&6; }
+@@ -6681,7 +6681,7 @@
    echo " * Not using system BOOST libraries: we'll build our own."
  
    boost_includes="-isystem \$(top_srcdir)/boost/include"

    

adfernandes＠macports.org

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