August 2012 - macports-tickets - lists.macosforge.org

[MacPorts] #33803: openmpi @1.5.5 +gcc46+threads - build error (cuda)
by MacPorts 28 Jan '14

28 Jan '14

#33803: openmpi @1.5.5 +gcc46+threads - build error (cuda) --------------------------------+------------------------------------------- Reporter: srinath@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.4 Keywords: | Port: --------------------------------+------------------------------------------- /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/openmpi/work/openmpi-1.5.5/ompi/contrib/vt/vt/vtlib/vt_cudartwrap.c:1378:14: error: conflicting types for 'cudaPointerGetAttributes' cudaError_t cudaPointerGetAttributes(struct cudaPointerAttributes *attributes, void *ptr) ^ In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/openmpi/work/openmpi-1.5.5/ompi/contrib/vt/vt/vtlib/vt_cudartwrap.c:13: In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/openmpi/work/openmpi-1.5.5/ompi/contrib/vt/vt/vtlib/vt_cudartwrap.h:25: In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/openmpi/work/openmpi-1.5.5/ompi/contrib/vt/vt/vtlib/vt_cuda_runtime_api.h:20: /usr/local/cuda/include/cuda_runtime_api.h:3899:39: note: previous declaration is here extern __host__ cudaError_t CUDARTAPI cudaPointerGetAttributes(struct cudaPointerAttributes *attributes, const void *ptr); ^ 1 error generated. make[5]: *** [vt_cudartwrap.lo] Error 1 -- Ticket URL: <https://trac.macports.org/ticket/33803> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #31244: OpenMPI thread support not working
by MacPorts 28 Jan '14

28 Jan '14

#31244: OpenMPI thread support not working ----------------------------------+----------------------------------------- Reporter: justus.c79@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: openmpi mpi threads | Port: openmpi ----------------------------------+----------------------------------------- When building openmpi +gcc45+threads I see the following output (with verbose mode) in the configure step. {{{ $ sudo port -v install openmpi +gcc45+threads ---> Computing dependencies for openmpi. ---> Fetching archive for openmpi ---> openmpi-1.5.4_0+gcc45+threads.darwin_11.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/software/openmpi ---> Attempting to fetch openmpi-1.5.4_0+gcc45+threads.darwin_11.x86_64.tbz2 from http://packages.macports.org/openmpi % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 ---> Fetching openmpi ---> Verifying checksum(s) for openmpi ---> Checksumming openmpi-1.5.4.tar.bz2 ---> Extracting openmpi ---> Extracting openmpi-1.5.4.tar.bz2 ---> Configuring openmpi configure: WARNING: unrecognized options: --with-xgrid, --enable-mpi- threads ============================================================================ == Configuring Open MPI ============================================================================ *** Startup tests checking build system type... x86_64-apple-darwin11.1.0 checking host system type... x86_64-apple-darwin11.1.0 checking target system type... x86_64-apple-darwin11.1.0 }}} Specifically I see: '''configure: WARNING: unrecognized options: --with-xgrid, --enable-mpi- threads''', which indicated OpenMPI is not being built with thread support. --enable-mpi-threads is added with the +threads variant. The behavior of OpenMPI configure script has changed. The new option that should be used is: --enable-mpi-thread-multiple This has the same effect as the old threads configure option. See http://www.open-mpi.org/community/lists/devel/2010/03/7531.php -- Ticket URL: <https://trac.macports.org/ticket/31244> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #27247: openmpi +gcc45 won't build in Mac OS X 10.5.8
by MacPorts 28 Jan '14

28 Jan '14

#27247: openmpi +gcc45 won't build in Mac OS X 10.5.8 -------------------------------+-------------------------------------------- Reporter: ksnelgrove@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.2 Keywords: | Port: openmpi -------------------------------+-------------------------------------------- I've been trying to build openmpi using macports. The command: % sudo port install openmpi +gcc45 Works fine on another machine with Mac OS X 10.6.4 but fails with 10.5.8 (Xcode 3.1.4). I've tried this on two separate machines with 10.5.8 with the same result and looked through most of the newer tickets without success. The log (attached) shows the build does go very far and there are a number of warnings and errors in the configuration log. I'm not experienced enough to know how to fix these. Some highlights: 1) --with-xgrid not recognized 2) why does build proceed with gcc-4.0 when gcc45 is an install prerequisite? 3) errors for a number of missing includes: vtf3.h BPatch.h f2c.h jvmti.h papi.h libcpc.h malloc.h ctool/ctool.h 4) warnings with: -fno-strict-aliasing added to CFLAGS -finline-functions added to CXXFLAGS -fvisibility=hidden added to CFLAGS The build proceeds to: :info:build CCLD libopen-pal.la :info:build CCLD libopen-pal-lt.la :info:build ar: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build/opal/e vent/.libs/libevent.a: Resource temporarily unavailable :info:build ar: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build/opal/m ca/base/.libs/libmca_base.a: Resource temporarily unavailable :info:build make[2]: *** [libopen-pal.la] Error 1 I've tried to build with the default: openmpi +gcc44 but get a similar errors -- Ticket URL: <https://trac.macports.org/ticket/27247> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #26424: valgrind +openmpi doesn't provide promised "libmpiwrap-<platform>.so" file
by MacPorts 28 Jan '14

28 Jan '14

#26424: valgrind +openmpi doesn't provide promised "libmpiwrap-<platform>.so" file ----------------------------------+----------------------------------------- Reporter: nilstec_inc@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.1 Keywords: | Port: valgrind-devel ----------------------------------+----------------------------------------- I do: {{{ sudo port clean valgrind-devel sudo port -d install valgrind-devel +openmpi }}} In the output of the configure the following two lines appear: {{{ checking primary target for usable MPI2-compliant C compiler and mpi.h... no checking secondary target for usable MPI2-compliant C compiler and mpi.h... no }}} According to the [http://valgrind.org/docs/manual/mc-manual.html#mc- manual.mpiwrap Valgrind User Manual] it should say `yes, mpicc`, right? I'll supply the output of `sudo port -d install valgrind-devel +openmpi`. Thanks for your help! -- Ticket URL: <http://trac.macports.org/ticket/26424> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #32450: install openmpi
by MacPorts 28 Jan '14

28 Jan '14

#32450: install openmpi -------------------------------+-------------------------------------------- Reporter: totofg@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: | Port: -------------------------------+-------------------------------------------- When I run mpif90, I have the message: Unfortunately, this installation of Open MPI was not compiled with Fortran 90 support. As such, the mpif90 compiler is non-functional. So I would like to install openmpi but there are errors I send the log file -- Ticket URL: <https://trac.macports.org/ticket/32450> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #28510: valgrind 3.6.1
by MacPorts 28 Jan '14

28 Jan '14

#28510: valgrind 3.6.1 --------------------------------+------------------------------------------- Reporter: naromero@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.2 Keywords: | Port: --------------------------------+------------------------------------------- The mpich2 variant is failing. I installed as follows sudo port install valgrind +mpich2 Looks like the construction of the libmpiwrap is failing. See attached log file. -- Ticket URL: <https://trac.macports.org/ticket/28510> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #29730: tortoisehg: add launcher icon and gui ssh-askpass
by MacPorts 28 Jan '14

28 Jan '14

#29730: tortoisehg: add launcher icon and gui ssh-askpass ---------------------------------+------------------------------------------ Reporter: shiena.jp@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.2 Keywords: haspatch | Port: tortoisehg ---------------------------------+------------------------------------------ ==== About launcher icon ==== Because TortoiseHg had a good logo, it converted it into the icon according to the following procedures. 1. get thg_logo.svg from https://bitbucket.org/tortoisehg/thg/src/47ff626c895d/icons/svg/thg_logo.svg 2. convert thg_logo.svg into tiff of width:128px and height:128px. I did export to png of 128x128 pixel with Inkscape, and converted it into tiff by the convert command of ImageMagick. 3. converts it into the icns by the tiff2icns command. ==== About gui ssh-askpass ==== It fails in the connection of the ssh server for which the password is necessary because osx doesn't have ssh-askpass. Then, it comes to be able to input the password by using this macos- askpass. I built this in tortoisehg. http://blogs.oracle.com/mock/entry/and_now_chicken_of_the -- Ticket URL: <https://trac.macports.org/ticket/29730> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #17243: make openmpi compiler wrappers use currenly selected compiler
by MacPorts 28 Jan '14

28 Jan '14

#17243: make openmpi compiler wrappers use currenly selected compiler --------------------------------+------------------------------------------- Reporter: mmoll(a)macports.org | Owner: mww(a)macports.org Type: enhancement | Status: new Priority: Normal | Milestone: Port Enhancements Component: ports | Version: 1.7.0 Keywords: openmpi gcc_select | Port: openmpi --------------------------------+------------------------------------------- It'd be nice if openmpi used gcc_select to select default compilers. Right now, the openmpi compiler wrappers (mpicc, mpicxx, mpif77) always use the C and C++ compilers in /usr/bin, even if /opt/local/bin comes first in the user's path. The changes to accomplish this are trivial: - add a dependency on port:gcc_select - patch the files in ${prefix}/share/openmpi to use /opt/local/bin/gcc instead of /usr/bin/gcc (similarly for C++ and Fortran). -- Ticket URL: <http://trac.macports.org/ticket/17243> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #35245: Building shared libraries of petsc
by MacPorts 28 Jan '14

28 Jan '14

#35245: Building shared libraries of petsc ------------------------------------+--------------------------------------- Reporter: jolivetinsar@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Keywords: | Port: ------------------------------------+--------------------------------------- Hello, I need to compile petsc with the option --with-shared-libraries=1. I modified the port on my machine, creating a new variant: variant shared description {build with shared libraries} { configure.args-delete --with-shared-libraries=0 configure.args-delete --with-pic=fPIC configure.args-append --with-shared-libraries=1 } I have to delete --with-pic=fPIC, otherwise it does not run. Then, it configures and builds fine, but when macports checks on the created files, it complains, and restarts the whole process (and does it over and over again): It says: ---> Updating database of binaries: 100.0% ---> Scanning binaries for linking errors: 100.0% ---> Found 3 broken file(s), matching files to ports ---> Found 1 broken port(s), determining rebuild order I did run port install --no-rev-upgrade petsc +variant so that it installs it and stops without checking what's wrong. Compiling goes fine. I then did run port -d -y rev-upgrade to see the problem, and I have this: DEBUG: Marking /opt/local/lib/petsc/lib/libparmetis.dylib as broken Could not open /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_petsc/petsc/work/petsc-3.3-p0/darwin/lib/libmetis.dylib: Error opening or reading file (referenced from /opt/local/lib/petsc/lib/libparmetis.dylib) DEBUG: Marking /opt/local/lib/petsc/lib/libpetsc.dylib as broken Could not open /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_petsc/petsc/work/petsc-3.3-p0/darwin/lib/libparmetis.dylib: Error opening or reading file (referenced from /opt/local/lib/petsc/lib/libpetsc.dylib) DEBUG: Marking /opt/local/lib/petsc/lib/libpetsc.dylib as broken To further investigate the problem, I tried: otools -L /opt/local/lib/petsc/libpetsc.dylib that says this file does not exists: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_petsc/petsc/work/destroot/opt/local/lib/petsc/lib/libpetsc.dylib There is no /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_petsc/ directory, indeed. I am kind of stuck there. I am probably doing things wrong, but I guess also there is a linking problem somewhere. Thank you for the help Romain -- Ticket URL: <https://trac.macports.org/ticket/35245> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #34377: tortoiseHG port has incompatible mercurial version
by MacPorts 28 Jan '14

28 Jan '14

#34377: tortoiseHG port has incompatible mercurial version --------------------------------------+------------------------------------- Reporter: p.dutton@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.4 Keywords: tortoisehg mercurial | Port: tortoisehg --------------------------------------+------------------------------------- Hi, I've installed the tortoisehg port but it will not run. It's saying: {{{ #!python ** Mercurial version (2.2.1). TortoiseHg version (2.1.2) ** Command: ** CWD: / ** Encoding: ascii ** Extensions loaded: ** Python version: 2.7.3 (default, May 8 2012, 12:36:09) [GCC 4.0.1 (Apple Inc. build 5493)] ** Qt-4.7.4 PyQt-4.9.1 This version of TortoiseHg requires Mercurial version 1.9.n to 1.10.n, but found 2.2.1 }}} The Mercurial version specified was installed as a dependency of this port, so I didn't have the opportunity to select a different version. Any ideas? Thanks, Peter -- Ticket URL: <https://trac.macports.org/ticket/34377> MacPorts <http://www.macports.org/> Ports system for Mac OS

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