November 2013 - macports-tickets - lists.macosforge.org

[MacPorts] #41404: libgcc installing problem
by MacPorts 17 Nov '13

17 Nov '13

#41404: libgcc installing problem ------------------------------+-------------------------------- Reporter: mazur.grzesiek@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: | Port: ------------------------------+-------------------------------- Hey ! I've tried to install scipy using macports for Mavericks. However I'm quite new OS X user, and I have no clue how to overcome this problem. I'd grateful for any supportive idea how to solve this problem. I attach the log file to this post. Cheers, GM Dependencies to be installed: gcc48 libgcc ---> Building libgcc Error: org.macports.build for port libgcc returned: command execution failed Error: Failed to install libgcc Please see the log file for port libgcc for details: -- Ticket URL: <https://trac.macports.org/ticket/41404> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #38881: try to install pan2
by MacPorts 17 Nov '13

17 Nov '13

#38881: try to install pan2 -----------------------------+-------------------------------- Reporter: william.biggs@… | Owner: macports-tickets@… Type: defect | Status: new Priority: High | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: -----------------------------+-------------------------------- When I try to install pan2 I get this error How do I fix it ? Error: The following dependencies were not installed: gmime gtk2 atk gobject-introspection cairo fontconfig freetype bzip2 libpixman libpng lzo2 xorg-libXext xorg-libX11 xorg-kbproto xorg-libXau xorg-xproto xorg- libXdmcp xorg-libxcb python27 db46 libedit openssl python_select sqlite3 xorg-libpthread-stubs xorg-xcb-proto libxml2 xorg-xextproto xorg-xcb-util xrender xorg-renderproto gdk-pixbuf2 jasper jpeg tiff hicolor-icon-theme pango Xft2 harfbuzz graphite2 icu shared-mime-info xorg-libXcomposite xorg-compositeproto xorg-libXfixes xorg-fixesproto xorg-libXcursor xorg- libXdamage xorg-damageproto xorg-libXi xorg-inputproto xorg-libXinerama xorg-xineramaproto xorg-libXrandr xorg-randrproto gtkspell2 enchant aspell texinfo hunspell readline gtk-doc docbook-xml docbook-xml-4.1.2 docbook- xml-4.2 xmlcatmgr docbook-xml-4.3 docbook-xml-4.4 docbook-xml-4.5 docbook- xml-5.0 docbook-xsl gnome-doc-utils iso-codes libxslt py27-libxml2 rarian intltool p5.12-getopt-long p5.12-pathtools p5.12-scalar-list-utils p5.12 -xml-parser pcre -- Ticket URL: <https://trac.macports.org/ticket/38881> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #41395: cannot build anything after upgrade to macports 2.2.1 after upgrade osx from 10.6.8 to 10.9
by MacPorts 17 Nov '13

17 Nov '13

#41395: cannot build anything after upgrade to macports 2.2.1 after upgrade osx from 10.6.8 to 10.9 ----------------------------------+-------------------------------- Reporter: daholm@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: Failed to create dir | Port: ----------------------------------+-------------------------------- Hey, after upgrading osx from 10.6.8 to 10.9 and updating macports to 2.2.1 (through installer package) i am not able to build/upgrade any package. I have checked the permissions for user macports under /opt/local/ all seems fine. But the build-process stops for every package at the point to create directories in the work directory: I also removed the whole macports with all installed packages, but also after reinstalling from blank - macports does not build a package because of the same failure. === shell output while trying to install bzip2 === sudo port install bzip2 ---> Extracting bzip2 Error: org.macports.extract for port bzip2 returned: command execution failed Please see the log file for port bzip2 for details: /opt/local/var/macports/logs/_Volumes_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port bzip2 failed === end shell output === Attached you can find the mail.log from building bzip2. best regards -- Ticket URL: <https://trac.macports.org/ticket/41395> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #41212: rrtool @ 2.2.1 + fail to install cmake
by MacPorts 16 Nov '13

16 Nov '13

#41212: rrtool @ 2.2.1 + fail to install cmake --------------------+-------------------------------- Reporter: h.ee@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: cmake | Port: --------------------+-------------------------------- when I tried to install macports, it showed error as: Dependencies to be installed: bison gstreamer010-gst-plugins-base gnome- vfs gconf gtk2 pango harfbuzz graphite2 cmake pkgconfig shared-mime-info xorg-libXcomposite xorg-compositeproto xorg-libXfixes xorg-fixesproto xorg-libXcursor xorg-libXdamage xorg-damageproto xorg-libXi xorg- libXinerama xorg-xineramaproto xorg-libXrandr xorg-randrproto orbit2 libidl policykit gnome-mime-data libtheora libvorbis libogg orc xorg- libice xorg-libsm lcms mesa makedepend xorg-dri2proto xorg-glproto xorg- libXmu xorg-libXt xorg-libXxf86vm xorg-xf86vidmodeproto ---> Configuring cmake Error: org.macports.configure for port cmake returned: configure failure: command execution failed Error: Failed to install cmake my system is OSX 10.9 i don't know if the problem relates to the Xcode. Cause after I downloaded and installed the Xcode, and run xcode-select --install in to the terminal, followed the instruction, it shows 'Can't install the software because it is not currently available from the Software Update server.' -- Ticket URL: <https://trac.macports.org/ticket/41212> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #39660: emulators/virtualbox41 - New Port Because VirtualBox 4.2.16 Cannot Boot OS X VMs
by MacPorts 16 Nov '13

16 Nov '13

#39660: emulators/virtualbox41 - New Port Because VirtualBox 4.2.16 Cannot Boot OS X VMs -----------------------------+-------------------------- Reporter: rmstonecipher@… | Owner: royliu@… Type: request | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: virtualbox41 -----------------------------+-------------------------- Please refer to upstream tickets linked in [https://www.virtualbox.org/ticket/11490].[[br]] In that and other upstream tickets users recommended using VirtualBox 4.1 for OS X VMs on OS X hosts.[[br]] I would propose creating a virtualbox41 port but do not understand the various patches in the current virtualbox port well enough to modify them to suit VirtualBox 4.1.[[br]] This port may conflict with the virtualbox port since both require kernel modules.[[br]] The current 4.1 series release of VirtualBox is 4.1.26. -- Ticket URL: <https://trac.macports.org/ticket/39660> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #41394: vtk44 @4.4.2 Configure error - build failure
by MacPorts 16 Nov '13

16 Nov '13

#41394: vtk44 @4.4.2 Configure error - build failure ---------------------------+-------------------------------- Reporter: ppstonerock@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: | Port: ---------------------------+-------------------------------- Error: org.macports.build for port vtk44 returned: command execution failed Please see the log file for port vtk44 for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_graphics_vtk44/vtk44/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port vtk44 failed -- Ticket URL: <https://trac.macports.org/ticket/41394> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40950: ghc @7.6.3_2 build failed: package-data.mk: No such file or directory
by MacPorts 16 Nov '13

16 Nov '13

#40950: ghc @7.6.3_2 build failed: package-data.mk: No such file or directory ----------------------+-------------------------------- Reporter: lwarxx@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: | Port: ----------------------+-------------------------------- OS X Mavericks Xcode 5.0.1, Build version 5A2053 {{{ version:1 :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 20 :debug:main euid changed to: 501 :debug:main Executing org.macports.main (ghc) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.archivefetch (ghc) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.fetch (ghc) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (ghc) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (ghc) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (ghc) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.configure (ghc) :debug:main Privilege de-escalation not attempted as not running as root. :debug:build build phase started at Sat Oct 26 08:11:34 NOVT 2013 :notice:build ---> Building ghc :debug:build Executing org.macports.build (ghc) :debug:build port disallows a parallel build :debug:build Environment: CPATH='/usr/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/usr/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.9' :debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/work/ghc-7.6.3" && /usr/bin/make -w all' :debug:build Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/work/ghc-7.6.3" && /usr/bin/make -w all :info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/work/ghc-7.6.3' :info:build Makefile:62: target `all' given more than once in the same rule. :info:build ===--- building phase 0 :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -r --no-print-directory -f ghc.mk phase=0 phase_0_builds :info:build libraries/hpc/ghc.mk:3: libraries/hpc/dist-boot/package- data.mk: No such file or directory :info:build libraries/Cabal/Cabal/ghc.mk:3: libraries/Cabal/Cabal/dist- boot/package-data.mk: No such file or directory :info:build libraries/binary/ghc.mk:3: libraries/binary/dist-boot/package- data.mk: No such file or directory :info:build libraries/bin-package-db/ghc.mk:3: libraries/bin-package-db /dist-boot/package-data.mk: No such file or directory :info:build libraries/hoopl/ghc.mk:3: libraries/hoopl/dist-boot/package- data.mk: No such file or directory :info:build compiler/ghc.mk:450: compiler/stage1/package-data.mk: No such file or directory :info:build utils/hsc2hs/ghc.mk:14: utils/hsc2hs/dist/package-data.mk: No such file or directory :info:build ghc/ghc.mk:106: ghc/stage1/package-data.mk: No such file or directory :info:build "inplace/bin/mkdirhier" bootstrapping/. :info:build mkdir: bootstrapping/.: No such file or directory :info:build make[1]: *** [bootstrapping/.] Error 1 :info:build make: *** [all] Error 2 :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/work/ghc-7.6.3' :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/work/ghc-7.6.3" && /usr/bin/make -w all :info:build Exit code: 2 :error:build org.macports.build for port ghc returned: command execution failed :debug:build Error code: CHILDSTATUS 1606 2 :debug:build Backtrace: command execution failed while executing "system -nice 0 $fullcmdstring" ("eval" body line 1) invoked from within "eval system $notty $nice \$fullcmdstring" invoked from within "command_exec build" (procedure "portbuild::build_main" line 8) invoked from within "$procedure $targetname" :info:build Warning: targets not executed for ghc: org.macports.activate org.macports.build org.macports.destroot org.macports.install :error:build Failed to install ghc :debug:build couldn't open "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex": no such file or directory while executing "open [file join $dir tclIndex]" :notice:build Please see the log file for port ghc for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/main.log }}} -- Ticket URL: <https://trac.macports.org/ticket/40950> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #41279: gimp2 @ 2.8.8 +quartz: keyboard malfunctioning
by MacPorts 16 Nov '13

16 Nov '13

#41279: gimp2 @ 2.8.8 +quartz: keyboard malfunctioning -------------------------------+-------------------------------- Reporter: david.e.pi.3.14@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: | Port: gimp2 -------------------------------+-------------------------------- When trying to export an image it is impossible to type in the filename in the file form, because the keyboard is captured by the toolbox and each keystroke is interpreted as a shortcut activating a tool in the toolbox -- Ticket URL: <https://trac.macports.org/ticket/41279> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40457: NEW: NEURON
by MacPorts 16 Nov '13

16 Nov '13

#40457: NEW: NEURON ------------------------+-------------------------------- Reporter: christsc@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: neuron ------------------------+-------------------------------- [http://www.neuron.yale.edu/neuron/ NEURON] is a simulation environment for neurons and networks of neurons that is [http://www.neuron.yale.edu/neuron/static/bib/usednrn.html widely used] in neuroscience. Some comments on the Portfiles: * A separate port is required for the graphics toolkit (neuron-iv) because it's optional (neuron has a +nogui variant), the source changes more rarely than neuron's, and it's under a different license. * The source tarballs are currently hosted on a mirror because the the version on the [http://www.neuron.yale.edu/ftp/neuron/versions/alpha/ official server] may change its url at any time. * The patch that comes with this Portfile has been [http://www.neuron.yale.edu/hg/neuron/nrn/rev/5ab4d7b9ecb1 accepted upstream] and will be included in the upcoming version 7.4. -- Ticket URL: <https://trac.macports.org/ticket/40457> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #41193: Octave does not install, because atlas cannot find the fortran compiler
by MacPorts 16 Nov '13

16 Nov '13

#41193: Octave does not install, because atlas cannot find the fortran compiler ----------------------------+-------------------------------- Reporter: gorkemozkaya@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: | Port: ----------------------------+-------------------------------- I am trying to install octave, but it gets stuck at installing atlas, complaining about the missing fortran compiler. {{{ ---> Configuring atlas Selected C compiler: /opt/local/bin/clang-mp-3.3 Error: org.macports.configure for port atlas returned: Atlas could not detect any fortran compiler. If you really don’t need the fortran interface to be built, please use the +nofortran option, else install a fortran compiler (e.g. gcc4X) before building Atlas. }}} I made sure that gfortran is installed on my system: {{{ $ which gfortran /usr/local/bin/gfortran }}} -- Ticket URL: <https://trac.macports.org/ticket/41193> MacPorts <http://www.macports.org/> Ports system for OS X

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