December 2013 - macports-tickets - lists.macosforge.org

[MacPorts] #28873: shogun @0.9.3 build failure
by MacPorts 02 Sep '14

02 Sep '14

#28873: shogun @0.9.3 build failure --------------------------------------+------------------------------------- Reporter: tal.yarkoni@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.2 Keywords: | Port: shogun --------------------------------------+------------------------------------- I can't get shogun 0.9.3 to build; relevant (I think) part of log below; full log attached. I'm running 10.6.6 with MacPorts 1.9.2 and Xcode 3.2.6 on a new (early 2011) MacBook Pro. I've tried uninstalling, cleaning, and reinstalling the complete dependency tree and get the same error. Any suggestions would be much appreciated. {{{ :info:build /opt/local/bin/g++-mp-4.4 -fPIC -pipe -O2 -m64 -g -Wall -Wno- unused-parameter -Wformat -Wformat-security -Wimplicit -Wparentheses -Wshadow -Wno-deprecated -O9 -fexpensive-optimizations -frerun-cse-after- loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread- jumps -fforce-addr -fstrength-reduce -funroll-loops -march=native -mtune=native -pthread -DSWIG_TYPE_TABLE=shogun -DDARWIN -DHAVE_POWL -DHAVE_SQRTL -DHAVE_ATLAS -DHAVE_LAPACK -DHAVE_LAPACK -DHAVE_LAPACK -DUSE_GLPK -DUSE_GZIP -DUSE_BZIP2 -DHAVE_LARGEFILE -DUSE_SHORTREAL_KERNELCACHE -DUSE_HMMPARALLELSTRUCTURES -DUSE_HMMPARALLEL -DUSE_BIGSTATES -DUSE_HMMCACHE -DUSE_REFERENCE_COUNTING -DGPL -DSWIG_TYPE_TABLE=shogun -DDARWIN -DHAVE_POWL -DHAVE_SQRTL -DHAVE_ATLAS -DHAVE_LAPACK -DHAVE_LAPACK -DHAVE_LAPACK -DUSE_GLPK -DUSE_GZIP -DUSE_BZIP2 -DHAVE_LARGEFILE -DUSE_SHORTREAL_KERNELCACHE -DUSE_HMMPARALLELSTRUCTURES -DUSE_HMMPARALLEL -DUSE_BIGSTATES -DUSE_HMMCACHE -DUSE_REFERENCE_COUNTING -DGPL -c -I. -I.. -I. -I.. -I/opt/local/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -I/opt/local/include -I../libshogun -I.. -o classifier/KernelPerceptron.cpp.o classifier/KernelPerceptron.cpp :info:build /opt/local/bin/g++-mp-4.4 -fPIC -pipe -O2 -m64 -g -Wall -Wno- unused-parameter -Wformat -Wformat-security -Wimplicit -Wparentheses -Wshadow -Wno-deprecated -O9 -fexpensive-optimizations -frerun-cse-after- loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread- jumps -fforce-addr -fstrength-reduce -funroll-loops -march=native -mtune=native -pthread -DSWIG_TYPE_TABLE=shogun -DDARWIN -DHAVE_POWL -DHAVE_SQRTL -DHAVE_ATLAS -DHAVE_LAPACK -DHAVE_LAPACK -DHAVE_LAPACK -DUSE_GLPK -DUSE_GZIP -DUSE_BZIP2 -DHAVE_LARGEFILE -DUSE_SHORTREAL_KERNELCACHE -DUSE_HMMPARALLELSTRUCTURES -DUSE_HMMPARALLEL -DUSE_BIGSTATES -DUSE_HMMCACHE -DUSE_REFERENCE_COUNTING -DGPL -DSWIG_TYPE_TABLE=shogun -DDARWIN -DHAVE_POWL -DHAVE_SQRTL -DHAVE_ATLAS -DHAVE_LAPACK -DHAVE_LAPACK -DHAVE_LAPACK -DUSE_GLPK -DUSE_GZIP -DUSE_BZIP2 -DHAVE_LARGEFILE -DUSE_SHORTREAL_KERNELCACHE -DUSE_HMMPARALLELSTRUCTURES -DUSE_HMMPARALLEL -DUSE_BIGSTATES -DUSE_HMMCACHE -DUSE_REFERENCE_COUNTING -DGPL -c -I. -I.. -I. -I.. -I/opt/local/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -I/opt/local/include -I../libshogun -I.. -o classifier/KNN.cpp.o classifier/KNN.cpp :info:build {standard input}:93:no such instruction: `vmovsd (%rdx,%rbx,8), %xmm0' :info:build {standard input}:111:no such instruction: `vmovsd LC2(%rip), %xmm0' ... goes on like this for a while... ... :info:build {standard input}:4095:no such instruction: `vmovsd %xmm1, (%r8)' :info:build {standard input}:4104:no such instruction: `vmovsd %xmm0, (%r9)' :info:build make[1]: *** [classifier/KNN.cpp.o] Error 1 :info:build make: *** [all] Error 2 :info:build shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_shogun/work/shogun-0.9.3/src" && /usr/bin/make -j5 all " returned error 2 :error:build Target org.macports.build returned: shell command failed (see log for details) }}} -- Ticket URL: <https://trac.macports.org/ticket/28873> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #41914: bastet: update to 0.43
by MacPorts 02 Sep '14

02 Sep '14

#41914: bastet: update to 0.43 --------------------------+---------------------- Reporter: ryandesign@… | Owner: sfiera@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: bastet --------------------------+---------------------- {{{ $ port livecheck bastet bastet seems to have been updated (port version: 0.41, new version: 0.43) }}} Note that 0.43 is a complete rewrite. -- Ticket URL: <https://trac.macports.org/ticket/41914> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #39640: Duplicate symbol __gcry_mpih_add_1 when linking libgcrypt
by MacPorts 02 Sep '14

02 Sep '14

#39640: Duplicate symbol __gcry_mpih_add_1 when linking libgcrypt --------------------------------+-------------------------------- Reporter: johan.mattsson.m@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: libgcrypt --------------------------------+-------------------------------- Hi I get an error when I try to install libgcrypt. Logfile is attached. Here is the failing step: Making all in src make[2]: Entering directory `/opt/birdfont/var/macports/build/_opt_birdfont_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_libgcrypt/libgcrypt/work/libgcrypt-1.5.0/src' /bin/sh ../libtool --tag=CC --mode=link /Developer/usr/bin/clang -I/opt/birdfont/include -pipe -O2 -std=gnu89 -fheinous-gnu-extensions -arch i386 -Wall -version-info 18:0:7 -L/opt/birdfont/lib -arch i386 -o libgcrypt.la -rpath /opt/birdfont/lib libgcrypt_la-visibility.lo libgcrypt_la-misc.lo libgcrypt_la-global.lo libgcrypt_la-sexp.lo libgcrypt_la-hwfeatures.lo libgcrypt_la-stdmem.lo libgcrypt_la-secmem.lo libgcrypt_la-missing-string.lo libgcrypt_la-module.lo libgcrypt_la-fips.lo libgcrypt_la-hmac256.lo libgcrypt_la-ath.lo ../cipher/libcipher.la ../random/librandom.la ../mpi/libmpi.la ../compat/libcompat.la -L/opt/birdfont/lib -lgpg-error libtool: link: rm -fr .libs/libgcrypt.lax libtool: link: (cd .libs/libgcrypt.lax/libcipher.a && ar x "/opt/birdfont/var/macports/build/_opt_birdfont_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_libgcrypt/libgcrypt/work/libgcrypt-1.5.0/src/../cipher/.libs/libcipher.a") libtool: link: (cd .libs/libgcrypt.lax/librandom.a && ar x "/opt/birdfont/var/macports/build/_opt_birdfont_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_libgcrypt/libgcrypt/work/libgcrypt-1.5.0/src/../random/.libs/librandom.a") libtool: link: (cd .libs/libgcrypt.lax/libmpi.a && ar x "/opt/birdfont/var/macports/build/_opt_birdfont_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_libgcrypt/libgcrypt/work/libgcrypt-1.5.0/src/../mpi/.libs/libmpi.a") libtool: link: (cd .libs/libgcrypt.lax/libcompat.a && ar x "/opt/birdfont/var/macports/build/_opt_birdfont_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_libgcrypt/libgcrypt/work/libgcrypt-1.5.0/src/../compat/.libs/libcompat.a") libtool: link: /Developer/usr/bin/clang -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libgcrypt.11.dylib .libs/libgcrypt_la- visibility.o .libs/libgcrypt_la-misc.o .libs/libgcrypt_la-global.o .libs /libgcrypt_la-sexp.o .libs/libgcrypt_la-hwfeatures.o .libs/libgcrypt_la- stdmem.o .libs/libgcrypt_la-secmem.o .libs/libgcrypt_la-missing-string.o .libs/libgcrypt_la-module.o .libs/libgcrypt_la-fips.o .libs/libgcrypt_la- hmac256.o .libs/libgcrypt_la-ath.o .libs/libgcrypt.lax/libcipher.a/ac.o .libs/libgcrypt.lax/libcipher.a/arcfour.o .libs/libgcrypt.lax/libcipher.a/blowfish.o .libs/libgcrypt.lax/libcipher.a /camellia-glue.o .libs/libgcrypt.lax/libcipher.a/camellia.o .libs/libgcrypt.lax/libcipher.a/cast5.o .libs/libgcrypt.lax/libcipher.a/cipher.o .libs/libgcrypt.lax/libcipher.a/crc.o .libs/libgcrypt.lax/libcipher.a/des.o .libs/libgcrypt.lax/libcipher.a/dsa.o .libs/libgcrypt.lax/libcipher.a/ecc.o .libs/libgcrypt.lax/libcipher.a/elgamal.o .libs/libgcrypt.lax/libcipher.a /hash-common.o .libs/libgcrypt.lax/libcipher.a/hmac-tests.o .libs/libgcrypt.lax/libcipher.a/kdf.o .libs/libgcrypt.lax/libcipher.a/md.o .libs/libgcrypt.lax/libcipher.a/md4.o .libs/libgcrypt.lax/libcipher.a/md5.o .libs/libgcrypt.lax/libcipher.a/primegen.o .libs/libgcrypt.lax/libcipher.a/pubkey.o .libs/libgcrypt.lax/libcipher.a/rfc2268.o .libs/libgcrypt.lax/libcipher.a/rijndael.o .libs/libgcrypt.lax/libcipher.a/rmd160.o .libs/libgcrypt.lax/libcipher.a/rsa.o .libs/libgcrypt.lax/libcipher.a/seed.o .libs/libgcrypt.lax/libcipher.a/serpent.o .libs/libgcrypt.lax/libcipher.a/sha1.o .libs/libgcrypt.lax/libcipher.a/sha256.o .libs/libgcrypt.lax/libcipher.a/sha512.o .libs/libgcrypt.lax/libcipher.a/tiger.o .libs/libgcrypt.lax/libcipher.a/twofish.o .libs/libgcrypt.lax/libcipher.a/whirlpool.o .libs/libgcrypt.lax/librandom.a/random-csprng.o .libs/libgcrypt.lax/librandom.a/random-fips.o .libs/libgcrypt.lax/librandom.a/random.o .libs/libgcrypt.lax/librandom.a/rndhw.o .libs/libgcrypt.lax/librandom.a/rndlinux.o .libs/libgcrypt.lax/libmpi.a/ec.o .libs/libgcrypt.lax/libmpi.a/mpi-add.o .libs/libgcrypt.lax/libmpi.a/mpi-bit.o .libs/libgcrypt.lax/libmpi.a/mpi- cmp.o .libs/libgcrypt.lax/libmpi.a/mpi-div.o .libs/libgcrypt.lax/libmpi.a /mpi-gcd.o .libs/libgcrypt.lax/libmpi.a/mpi-inline.o .libs/libgcrypt.lax/libmpi.a/mpi-inv.o .libs/libgcrypt.lax/libmpi.a/mpi- mod.o .libs/libgcrypt.lax/libmpi.a/mpi-mpow.o .libs/libgcrypt.lax/libmpi.a /mpi-mul.o .libs/libgcrypt.lax/libmpi.a/mpi-pow.o .libs/libgcrypt.lax/libmpi.a/mpi-scan.o .libs/libgcrypt.lax/libmpi.a/mpicoder.o .libs/libgcrypt.lax/libmpi.a/mpih- add1.o .libs/libgcrypt.lax/libmpi.a/mpih-div.o .libs/libgcrypt.lax/libmpi.a/mpih-lshift.o .libs/libgcrypt.lax/libmpi.a /mpih-mul.o .libs/libgcrypt.lax/libmpi.a/mpih-mul1.o .libs/libgcrypt.lax/libmpi.a/mpih-mul2.o .libs/libgcrypt.lax/libmpi.a /mpih-mul3.o .libs/libgcrypt.lax/libmpi.a/mpih-rshift.o .libs/libgcrypt.lax/libmpi.a/mpih-sub1.o .libs/libgcrypt.lax/libmpi.a/mpiutil.o .libs/libgcrypt.lax/libcompat.a/compat.o -L/opt/birdfont/lib /opt/birdfont/lib/libgpg-error.dylib -arch i386 -arch i386 -install_name /opt/birdfont/lib/libgcrypt.11.dylib -compatibility_version 19 -current_version 19.0 -Wl,-single_module ld: duplicate symbol __gcry_mpih_add_1 in .libs/libgcrypt.lax/libmpi.a /mpi-add.o and .libs/libgcrypt.lax/libmpi.a/ec.o make[2]: *** [libgcrypt.la] Error 1 make[2]: Leaving directory `/opt/birdfont/var/macports/build/_opt_birdfont_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_libgcrypt/libgcrypt/work/libgcrypt-1.5.0/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/opt/birdfont/var/macports/build/_opt_birdfont_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_libgcrypt/libgcrypt/work/libgcrypt-1.5.0' make: *** [all] Error 2 make: Leaving directory `/opt/birdfont/var/macports/build/_opt_birdfont_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_libgcrypt/libgcrypt/work/libgcrypt-1.5.0' -- Ticket URL: <https://trac.macports.org/ticket/39640> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #37089: cgit @0.9.0.3_0 Warning: Violation by /usr -- Warning: cgit violates the layout of the ports-filesystems!
by MacPorts 02 Sep '14

02 Sep '14

#37089: cgit @0.9.0.3_0 Warning: Violation by /usr -- Warning: cgit violates the layout of the ports-filesystems! ------------------------------------------+-------------------------------- Reporter: peter.hillerstrom+macports@… | Owner: macports-tickets@… Type: defect | Status: new Priority: High | Milestone: Component: ports | Version: 2.1.2 Keywords: violation, ports-filesystems | Port: cgit ------------------------------------------+-------------------------------- When doing {{{port -u upgrade outdated}}}, I noticed an error in cgit port: {{{ ---> Computing dependencies for cgit ---> Fetching archive for cgit ---> Attempting to fetch cgit-0.9.0.3_0.darwin_10.x86_64.tbz2 from http://lil.fr.packages.macports.org/cgit ---> Attempting to fetch cgit-0.9.0.3_0.darwin_10.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/cgit ---> Attempting to fetch cgit-0.9.0.3_0.darwin_10.x86_64.tbz2 from http://packages.macports.org/cgit ---> Fetching distfiles for cgit ---> Attempting to fetch cgit-0.9.0.3.tar.bz2 from http://lil.fr.distfiles.macports.org/git-core ---> Attempting to fetch git-1.7.4.tar.bz2 from http://lil.fr.distfiles.macports.org/git-core ---> Verifying checksum(s) for cgit ---> Extracting cgit ---> Configuring cgit ---> Building cgit ---> Staging cgit into destroot Warning: violation by /usr Warning: cgit violates the layout of the ports-filesystems! Warning: Please fix or indicate this misbehavior (if it is intended), it will be an error in future releases! ---> Installing cgit @0.9.0.3_0 ---> Cleaning cgit ---> Computing dependencies for cgit ---> Deactivating cgit @0.8.2.1_1 ---> Cleaning cgit ---> Activating cgit @0.9.0.3_0 ---> Cleaning cgit ---> Uninstalling cgit @0.8.2.1_1 Error: org.macports.uninstall for port cgit returned: error deleting "/opt/local/var/macports/software/cgit/0.8.2.1_1": directory not empty Please see the log file for port cgit for details: /opt/local/var/macports/logs/_opt_local_var_macports_registry_portfiles_cgit_0.8.2.1_1/cgit/main.log Warning: Failed to execute portfile from registry for cgit @0.8.2.1_1 ---> Uninstalling cgit @0.8.2.1_1 Error: Uninstall cgit @0.8.2.1_1 failed: error deleting "/opt/local/var/macports/software/cgit/0.8.2.1_1": directory not empty To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets 91-157-48-10# port contents cgit Port cgit contains: /opt/local/etc/cgitrc.sample /opt/local/var/cache/cgit/.turd_cgit /opt/local/www/data/cgit/cgit.cgi /opt/local/www/data/cgit/cgit.css /opt/local/www/data/cgit/cgit.png /usr/lib/cgit/filters/commit-links.sh /usr/lib/cgit/filters/syntax-highlighting.sh 91-157-48-10# port contents cgit(a)0.9.0.3_0 Port cgit contains: /opt/local/etc/cgitrc.sample /opt/local/var/cache/cgit/.turd_cgit /opt/local/www/data/cgit/cgit.cgi /opt/local/www/data/cgit/cgit.css /opt/local/www/data/cgit/cgit.png /usr/lib/cgit/filters/commit-links.sh /usr/lib/cgit/filters/syntax-highlighting.sh 91-157-48-10# port contents cgit(a)0.8.2.1_1 Port cgit contains: /opt/local/etc/cgitrc.sample /opt/local/var/cache/cgit/.turd_cgit /opt/local/www/data/cgit/cgit.cgi /opt/local/www/data/cgit/cgit.css /opt/local/www/data/cgit/cgit.png /usr/lib/cgit/filters/commit-links.sh /usr/lib/cgit/filters/syntax-highlighting.sh }}} -- Ticket URL: <https://trac.macports.org/ticket/37089> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #27931: No icons on the Applications folder
by MacPorts 02 Sep '14

02 Sep '14

#27931: No icons on the Applications folder -------------------------------+-------------------------------------------- Reporter: strassh@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.2 Keywords: | Port: -------------------------------+-------------------------------------------- Few month ago I installed kdegames4 and all icons were visible on the /Applications/MacPorts/KDE4 folder. Now after an update all icons looks the same (2 sheets of paper, a pencil, a ruler and a brush). The right icon shows up on the dock when the app is launched, but disappear just after it is closed. -- Ticket URL: <https://trac.macports.org/ticket/27931> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #19768: Request to add 'ministat' port
by MacPorts 01 Sep '14

01 Sep '14

#19768: Request to add 'ministat' port ------------------------------+--------------------------------------------- Reporter: jrsims@… | Owner: macports-tickets@… Type: request | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.7.1 Keywords: | Port: ------------------------------+--------------------------------------------- Looks like the official URL for this project is here: http://www.freebsd.org/cgi/cvsweb.cgi/src/tools/tools/ministat/ -- Ticket URL: <http://trac.macports.org/ticket/19768> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #37670: port wkhtmltopdf
by MacPorts 01 Sep '14

01 Sep '14

#37670: port wkhtmltopdf -------------------------+-------------------------------- Reporter: pengyu.ut@… | Owner: macports-tickets@… Type: request | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: | Port: -------------------------+-------------------------------- [http://code.google.com/p/wkhtmltopdf/] -- Ticket URL: <https://trac.macports.org/ticket/37670> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #37193: tcpxtract 1.0.1 install failure
by MacPorts 31 Aug '14

31 Aug '14

#37193: tcpxtract 1.0.1 install failure -----------------------------+-------------------------------- Reporter: wjbivens@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: install failure | Port: tcpxtract -----------------------------+-------------------------------- When attempting to install tcpxtract 1.0.1, received the following output eluding to a failed execution and failure to install. Error: org.macports.build for port tcpxtract returned: command execution failed Please see the log file for port tcpxtract for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_net_tcpxtract/tcpxtract/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port tcpxtract failed -- Ticket URL: <https://trac.macports.org/ticket/37193> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #30834: elasticsearch
by MacPorts 31 Aug '14

31 Aug '14

#30834: elasticsearch ----------------------------------------+----------------------------------- Reporter: bertrand.zuchuat@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.1 Keywords: | Port: ----------------------------------------+----------------------------------- it's possible to add the new elasticsearch ? http://www.elasticsearch.org/ Thank's -- Ticket URL: <https://trac.macports.org/ticket/30834> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #15514: reinplace should warn if nothing got replaced
by MacPorts 30 Aug '14

30 Aug '14

#15514: reinplace should warn if nothing got replaced -------------------------------------+-------------------------------------- Reporter: ryandesign(a)macports.org | Owner: macports-tickets(a)lists.macosforge.org Type: enhancement | Status: new Priority: Normal | Milestone: Port Enhancements Component: base | Version: 1.6.0 Keywords: | -------------------------------------+-------------------------------------- What's always bugged me about reinplace is that you get no notification if nothing got replaced, which will probably bite you later. If you use a patchfile to modify a file, and the patch is out of date, the patch fails to apply and the port command exits with an error. This is good; it alerts the port author to the situation and they can fix it by changing or removing the patch. But with reinplace, if the underlying file you're modifying has changed such that the reinplace no longer causes anything to change, you get no warning and the port command proceeds. I think the correct behavior might ultimately be to error out entirely if a reinplace doesn't change a file, just like we do with failed patches. But as a first step, to get port authors used to this change, it might be friendlier to just print a warning for now. The attached patch adds a warning if a reinplace doesn't change the underlying file. -- Ticket URL: <http://trac.macports.org/ticket/15514> MacPorts <http://www.macports.org/> Ports system for Mac OS

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