February 2013 - macports-tickets - lists.macosforge.org

[MacPorts] #38204: Reduce compiler optimization to fix arb runtime crash of fast aligner
by MacPorts 25 Feb '13

25 Feb '13

#38204: Reduce compiler optimization to fix arb runtime crash of fast aligner ---------------------------------+-------------------------------- Reporter: matt.cottrell@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: maintainer haspatch | Port: arb ---------------------------------+-------------------------------- Users of the arb port have reported a runtime crash in the DNA sequence fast aligner. The attached patches work around that crash by reducing the level of compiler optimization from -O4 to -O0. The upstream developers are aware of the problem and are working on a long term solution that will appear in their next arb release. The attached patches make it possible for all arb 5.5 users to get their work done using MacPorts. -- Ticket URL: <https://trac.macports.org/ticket/38204> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #38201: Error: graphviz cannot be built while nawk is active.
by MacPorts 25 Feb '13

25 Feb '13

#38201: Error: graphviz cannot be built while nawk is active. -------------------------------+-------------------------------- Reporter: parag.deshpande@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: -------------------------------+-------------------------------- Hello, I am trying to build the linphone on my Mac OS X 10.7.5 with Xcode 4.6 and Mac ports installed . I am following the building guidelines provided with linphone source code as follows. Linphone for iPhone depends on liblinphone sdk. This SDK is generated from makefiles and shell scripts. You must first install both xcode with iPhone OS SDK and MacPorts (www.macports.org) for these scripts to work. Once xccode and macports are installed, open a terminal and install the required build-time tools with: $ sudo port install nawk coreutils automake autoconf libtool intltool wget pkgconfig cmake yasm doxygen when i try to execute same command on terminal it gives following error to me Error: graphviz cannot be built while nawk is active. Error: Please deactivate nawk and try again. Error: You can reactivate nawk again later. Error: org.macports.configure for port graphviz returned: nawk is active Error: Failed to install graphviz Please see the log file for port graphviz for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_graphics_graphviz/graphviz/main.log Error: The following dependencies were not installed: graphviz To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port oxygen failed And this is the log file version:1 :debug:clean changing euid/egid - current euid: 0 - current egid: 0 :debug:clean egid changed to: 501 :debug:clean euid changed to: 502 :debug:main Executing org.macports.main (graphviz) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.archivefetch (graphviz) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.fetch (graphviz) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (graphviz) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (graphviz) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (graphviz) :debug:main Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Mon Feb 25 18:12:59 IST 2013 :notice:configure ---> Configuring graphviz :debug:configure Using compiler 'Mac OS X clang' :debug:configure Executing proc-pre-org.macports.configure-configure-0 :error:configure graphviz cannot be built while nawk is active. :error:configure Please deactivate nawk and try again. :error:configure You can reactivate nawk again later. :error:configure org.macports.configure for port graphviz returned: nawk is active :debug:configure Error code: NONE :debug:configure Backtrace: nawk is active while executing "$pre $targetname" :info:configure Warning: targets not executed for graphviz: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install :error:configure Failed to install graphviz :debug:configure Registry error: graphviz not registered as installed & active. invoked from within "registry_active ${subport}" invoked from within "$workername eval registry_active \${subport}" :notice:configure Please see the log file for port graphviz for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_graphics_graphviz/graphviz/main.log Can any one help me to sort the issue. Regards, Parag -- Ticket URL: <https://trac.macports.org/ticket/38201> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #38157: Boost will not complete installation
by MacPorts 25 Feb '13

25 Feb '13

#38157: Boost will not complete installation -----------------------+-------------------------------- Reporter: iwerris@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: boost | Port: boost -----------------------+-------------------------------- After trying for a few hours I can't figure out why this isn't working. I'm running OS X 10.8.2. The farthest I've been able to get is running : sudo port clean boost sudo port selfupdate sudo port -d install boost Which results in a failure and the attached log file... -- Ticket URL: <https://trac.macports.org/ticket/38157> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #38199: maven3 @3.0.5 Provide update
by MacPorts 25 Feb '13

25 Feb '13

#38199: maven3 @3.0.5 Provide update ----------------------+-------------------------------- Reporter: m@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: security | Port: maven3 ----------------------+-------------------------------- Apache [http://maven.apache.org/docs/3.0.5/release-notes.html Maven 3.0.5] is a maintenance release to fix security issue [http://maven.apache.org/security.html CVE-2013-0253 Apache Maven 3.0.4]. Please provide that version. -- Ticket URL: <https://trac.macports.org/ticket/38199> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #35562: class-dump @3.3.4 Builds fails / hangs on 10.8.0 w/ Xcode 4.5 DP4
by MacPorts 25 Feb '13

25 Feb '13

#35562: class-dump @3.3.4 Builds fails / hangs on 10.8.0 w/ Xcode 4.5 DP4 --------------------------------------+------------------------------------- Reporter: john.engelhart@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: | Port: --------------------------------------+------------------------------------- Build fails / hangs for unknown reasons. It is not {{{xcodebuild --license}}} related. I just received a brand new MacBook Pro Retina with 10.8 installed on it, and then installed Xcode 4.5 DP4 on it (this would be the first Xcode installed on this machine). Installed MacPorts via Mountain Lion {{{.pkg}}} installer. While {{{class-dump}}} fails / hangs, this is just the only one that I'm reporting about. For all practical purposes, MacPorts simply does not work, nor can it be easily coerced to work on this system. I would estimate that about 15-20% of the packages I typically install via MacPorts are failing or hanging mysteriously. -- Ticket URL: <https://trac.macports.org/ticket/35562> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #38008: avr-gcc application
by MacPorts 25 Feb '13

25 Feb '13

#38008: avr-gcc application ---------------------------+-------------------------------- Reporter: wcontello@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: avr-gcc 4.7.2 | Port: avr-gcc ---------------------------+-------------------------------- I cannot see how to file a report with the application maintainer: it appears a 16 bit compare tries to use a register that the compiler expected to be 0 but is not. When I compile a set of source using version 4.5.1 I get code that works but when I use 4.7.2 the code does not work. I am attaching a zip file which contains: - a MakeFile for building the avr hex and elf files along with the commands I use to get the resulting files - a pdf where I have tried to highlight the offending lines - a main.c file you can compile using the make file to build the avr target or build for your native platform (I'm on a Mac OS X machine so I have a __APPLE__ preprocessor which you may need to change) - a Problem.txt file that details what I was trying to do (The LED does in one direction and never turns around) -- Ticket URL: <https://trac.macports.org/ticket/38008> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #37222: py-pyobjc: revamp port and its siblings
by MacPorts 25 Feb '13

25 Feb '13

#37222: py-pyobjc: revamp port and its siblings -------------------------+------------------------------------------------- Reporter: | Owner: macports-tickets@… sean.michael.farley@… | Status: new Type: update | Milestone: Priority: Normal | Version: 2.1.2 Component: ports | Port: py-pyobjc,py-pyobjc-cocoa,py- Keywords: haspatch | pyobjc-quartz,py-pyobjc-qtkit -------------------------+------------------------------------------------- This overhaul unifies py-pyobjc (and py-pyobjc-{cocoa,quartz,qtkit}) into the python group and updates to the latest releases. -- Ticket URL: <https://trac.macports.org/ticket/37222> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #37631: Avidemux Install
by MacPorts 24 Feb '13

24 Feb '13

#37631: Avidemux Install --------------------------------+-------------------------------- Reporter: CharlesRThomasJr@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: | Port: --------------------------------+-------------------------------- macbook:~ c$ sudo port install avidemux Password: ---> Computing dependencies for sqlite3 ---> Fetching archive for sqlite3 ---> Attempting to fetch sqlite3-3.7.15.2_0.darwin_12.x86_64.tbz2 from http://packages.macports.org/sqlite3 ---> Attempting to fetch sqlite3-3.7.15.2_0.darwin_12.x86_64.tbz2.rmd160 from http://packages.macports.org/sqlite3 ---> Installing sqlite3 @3.7.15.2_0 ---> Cleaning sqlite3 ---> Computing dependencies for sqlite3 ---> Deactivating sqlite3 @3.7.15.1_0 ---> Cleaning sqlite3 ---> Activating sqlite3 @3.7.15.2_0 ---> Cleaning sqlite3 ---> Computing dependencies for avidemux ---> Dependencies to be installed: cmake spidermonkey nspr yasm ---> Fetching archive for cmake ---> Attempting to fetch cmake-2.8.10_1.darwin_12.x86_64.tbz2 from http://packages.macports.org/cmake ---> Attempting to fetch cmake-2.8.10_1.darwin_12.x86_64.tbz2.rmd160 from http://packages.macports.org/cmake ---> Installing cmake @2.8.10_1 ---> Activating cmake @2.8.10_1 ---> Cleaning cmake ---> Fetching archive for nspr ---> Attempting to fetch nspr-4.8.9_0.darwin_12.x86_64.tbz2 from http://packages.macports.org/nspr ---> Attempting to fetch nspr-4.8.9_0.darwin_12.x86_64.tbz2.rmd160 from http://packages.macports.org/nspr ---> Installing nspr @4.8.9_0 ---> Activating nspr @4.8.9_0 ---> Cleaning nspr ---> Fetching archive for spidermonkey ---> Attempting to fetch spidermonkey-1.7.0_6.darwin_12.x86_64.tbz2 from http://packages.macports.org/spidermonkey ---> Attempting to fetch spidermonkey-1.7.0_6.darwin_12.x86_64.tbz2.rmd160 from http://packages.macports.org/spidermonkey ---> Installing spidermonkey @1.7.0_6 ---> Activating spidermonkey @1.7.0_6 ---> Cleaning spidermonkey ---> Fetching archive for yasm ---> Attempting to fetch yasm-1.2.0_0.darwin_12.x86_64.tbz2 from http://packages.macports.org/yasm ---> Attempting to fetch yasm-1.2.0_0.darwin_12.x86_64.tbz2.rmd160 from http://packages.macports.org/yasm ---> Installing yasm @1.2.0_0 ---> Activating yasm @1.2.0_0 ---> Cleaning yasm ---> Fetching archive for avidemux ---> Attempting to fetch avidemux-2.5.3_9.darwin_12.x86_64.tbz2 from http://packages.macports.org/avidemux ---> Attempting to fetch avidemux-2.5.3_9.darwin_12.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/avidemux ---> Attempting to fetch avidemux-2.5.3_9.darwin_12.x86_64.tbz2 from http://lil.fr.packages.macports.org/avidemux ---> Attempting to fetch avidemux-2.5.3_9.darwin_12.x86_64.tbz2 from http://jog.id.packages.macports.org/macports/packages/avidemux ---> Fetching distfiles for avidemux ---> Attempting to fetch avidemux_2.5.3.tar.gz from http://superb- dca2.dl.sourceforge.net/avidemux ---> Verifying checksum(s) for avidemux ---> Extracting avidemux ---> Applying patches to avidemux ---> Configuring avidemux ---> Building avidemux Error: org.macports.build for port avidemux returned: command execution failed To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port avidemux failed -- Ticket URL: <https://trac.macports.org/ticket/37631> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #38190: Request for xboard +gtk variant
by MacPorts 24 Feb '13

24 Feb '13

#38190: Request for xboard +gtk variant ----------------------+-------------------------------- Reporter: zullil@… | Owner: macports-tickets@… Type: request | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: xboard ----------------------+-------------------------------- xboard can now be configured to use gtk instead of Xaw. It would be nice to have a variant of the xboard port that uses this configuration. -- Ticket URL: <https://trac.macports.org/ticket/38190> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #38188: Error: Processing of port putty failed
by MacPorts 24 Feb '13

24 Feb '13

#38188: Error: Processing of port putty failed ------------------------+-------------------------------- Reporter: dzrock89@… | Owner: macports-tickets@… Type: defect | Status: new Priority: High | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: ------------------------+-------------------------------- version:1 :debug:main Attempting ln -sf /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_expat/expat/work /opt/local/var/macports/sources/rsync.macports.org/release/ports/textproc/expat/work :debug:main Executing org.macports.main (expat) :debug:archivefetch archivefetch phase started at Mon Feb 25 00:22:17 WIT 2013 :msg:archivefetch ---> Fetching archive for expat :debug:archivefetch Executing org.macports.archivefetch (expat) :info:archivefetch ---> expat-2.1.0_0.darwin_10.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified :msg:archivefetch ---> Attempting to fetch expat-2.1.0_0.darwin_10.x86_64.tbz2 from http://jog.id.packages.macports.org/macports/packages/expat :msg:archivefetch ---> Attempting to fetch expat-2.1.0_0.darwin_10.x86_64.tbz2.rmd160 from http://jog.id.packages.macports.org/macports/packages/expat :debug:archivefetch name lookup timed out while executing "curl fetch --effective-url effectiveURL --disable-epsv ${file_url}.rmd160 $signature" ("eval" body line 1) invoked from within "eval curl fetch --effective-url effectiveURL $fetch_options {${file_url}.rmd160} {$signature}" :error:archivefetch org.macports.archivefetch for port expat returned: Failed to fetch signature for archive: name lookup timed out :debug:archivefetch Error code: NONE :debug:archivefetch Backtrace: Failed to fetch signature for archive: name lookup timed out while executing "portarchivefetch::fetchfiles" (procedure "portarchivefetch::archivefetch_main" line 5) invoked from within "$procedure $targetname" :info:archivefetch Warning: targets not executed for expat: org.macports.activate org.macports.archivefetch org.macports.fetch org.macports.checksum org.macports.extract org.macports.patch org.macports.configure org.macports.build org.macports.destroot org.macports.install :error:archivefetch Failed to install expat :debug:archivefetch couldn't open "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex": no such file or directory while executing "open [file join $dir tclIndex]" :notice:archivefetch Please see the log file for port expat for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_expat/expat/main.log -- Ticket URL: <https://trac.macports.org/ticket/38188> MacPorts <http://www.macports.org/> Ports system for Mac OS

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