May 2013 - macports-tickets - lists.macosforge.org

[MacPorts] #19397: scipy not completely universal
by MacPorts 14 Aug '14

14 Aug '14

#19397: scipy not completely universal -------------------------------------------+-------------------------------- Reporter: daweonline@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.7.1 Keywords: scipy python universal binary | Port: py26-scipy -------------------------------------------+-------------------------------- I've added "i386 x86_64" as universal flags in macports.conf. I've built python2.6 enabling universal and I successfully run it in 64 bit mode. I've built p26-scipy +universal but: {{{ >>> import scipy.signal Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/signal/__init__.py", line 9, in <module> from bsplines import * File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/signal/bsplines.py", line 3, in <module> import scipy.special File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/special/__init__.py", line 8, in <module> from basic import * File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/special/basic.py", line 8, in <module> from _cephes import * ImportError: dlopen(/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/special/_cephes.so, 2): no suitable image found. Did find: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/special/_cephes.so: mach-o, but wrong architecture }}} and also: {{{ >>> import scipy.linalg Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/linalg/__init__.py", line 8, in <module> from basic import * File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/linalg/basic.py", line 17, in <module> from lapack import get_lapack_funcs File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/linalg/lapack.py", line 17, in <module> from scipy.linalg import flapack ImportError: dlopen(/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/linalg/flapack.so, 2): no suitable image found. Did find: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/scipy/linalg/flapack.so: mach-o, but wrong architecture }}} I've checked and there are a lot of others object only built for i386. Changing the universal flags to x86_64 only doesn't work. It appears that the build chain of scipy understands "universal" as "i386 ppc" only. {{{ $ port version Version: 1.710 $ uname -a Darwin host032.2b11.ifom-ieo-campus.it 9.6.3 Darwin Kernel Version 9.6.3: Tue Jan 20 18:26:40 PST 2009; root:xnu-1228.10.33~1/RELEASE_I386 i386 }}} -- Ticket URL: <http://trac.macports.org/ticket/19397> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #38091: alpine @2.00_4: update to 2.10
by MacPorts 13 Aug '14

13 Aug '14

#38091: alpine @2.00_4: update to 2.10 ----------------------+---------------------- Reporter: larryv@… | Owner: larryv@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: alpine ----------------------+---------------------- [http://patches.freeiz.com/alpine/info/alpine.html Alpine 2.10] has been released. We should probably update the `alpine` port. -- Ticket URL: <https://trac.macports.org/ticket/38091> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #37066: p5-shell-parser won't build
by MacPorts 13 Aug '14

13 Aug '14

#37066: p5-shell-parser won't build -----------------------------------------+-------------------------------- Reporter: ag@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: p5-shell-parser won't build | Port: p5-shell-parser -----------------------------------------+-------------------------------- Last lines of build: :debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_perl_p5 -shell-parser/p5.12-shell-parser/work to macports :debug:extract euid/egid changed to: 503/501 :debug:extract Privilege de-escalation not attempted as not running as root. :debug:patch patch phase started at Tue Nov 20 20:43:34 CET 2012 :debug:patch Executing org.macports.patch (p5.12-shell-parser) :debug:patch Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Tue Nov 20 20:43:34 CET 2012 :notice:configure ---> Configuring p5.12-shell-parser :debug:configure Using compiler 'Mac OS X clang' :debug:configure Executing org.macports.configure (p5.12-shell-parser) :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.8' CXX='/usr/bin/clang++' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_perl_p5 -shell-parser/p5.12-shell-parser/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2' LDFLAGS='-L/opt/local/lib' FCFLAGS='-pipe -O2' OBJC='/usr/bin/clang' INSTALL='/usr/bin/install -c' PERL_AUTOINSTALL='--skipdeps' OBJCFLAGS='-pipe -O2' FFLAGS='-pipe -O2' CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang' :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_perl_p5 -shell-parser/p5.12-shell-parser/work/Shell-Parser-0.04" && /opt/local/bin/perl5.12 Makefile.PL INSTALLDIRS=vendor CC="/usr/bin/clang" LD="/usr/bin/clang"' :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_perl_p5 -shell-parser/p5.12-shell-parser/work/Shell-Parser-0.04" && /opt/local/bin/perl5.12 Makefile.PL INSTALLDIRS=vendor CC="/usr/bin/clang" LD="/usr/bin/clang" :info:configure Checking if your kit is complete... :info:configure Looks good :info:configure Writing Makefile for Shell::Parser :debug:configure Executing proc-post-org.macports.configure-configure-0 :info:configure sed: RE error: illegal byte sequence :info:configure Command failed: find /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_perl_p5 -shell-parser/p5.12-shell-parser/work/Shell-Parser-0.04 -name Makefile -type f -print0 | xargs -0 /usr/bin/sed -i "" '/^CCFLAGS *=/s/$/ /' ; :info:configure Exit code: 1 :error:configure org.macports.configure for port p5.12-shell-parser returned: command execution failed :debug:configure Error code: NONE :debug:configure Backtrace: command execution failed while executing "$post $targetname" :info:configure Warning: targets not executed for p5.12-shell-parser: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install :error:configure Failed to install p5.12-shell-parser :debug:configure Registry error: p5.12-shell-parser not registered as installed & active. invoked from within "registry_active ${subport}" invoked from within "$workername eval registry_active \${subport}" -- Ticket URL: <https://trac.macports.org/ticket/37066> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #36054: Feature request: reload action
by MacPorts 13 Aug '14

13 Aug '14

#36054: Feature request: reload action ----------------------------------+----------------------------------------- Reporter: mailtoarlo@… | Owner: macports-tickets@… Type: request | Status: new Priority: Low | Milestone: Component: base | Version: Keywords: | Port: ----------------------------------+----------------------------------------- When using ports that are started using launchd (e.g. apache2, mysql, php- fpm) the combination of {{{port unload}}} and {{{port load}}} is used to test configuration changes. Sadly typing this is long and cumbersome: {{{ sudo port unload apache2 && sudo port load apache2 }}} I suggest the {{{port reload}}} action that reduces the above to: {{{ sudo port reload apache2 }}} This is a common practice of "similar" commands like [http://manpages.ubuntu.com/manpages/hardy/en/man1/service.1.html service]. -- Ticket URL: <https://trac.macports.org/ticket/36054> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #37921: RFE: binutils's "notes" entry should specify which ports exactly it causes to fail to build
by MacPorts 13 Aug '14

13 Aug '14

#37921: RFE: binutils's "notes" entry should specify which ports exactly it causes to fail to build -------------------------+-------------------------------- Reporter: egall@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: | Port: binutils -------------------------+-------------------------------- Right now binutils comes with the following "notes" entry in its portfile: {{{ "Having ${name} installed will cause some other ports to\ fail to build. Consider uninstalling ${name}." }}} I'd like to know which ports exactly these are, or at least have a link to a Trac ticket or something, so I can be better informed about whether I should actually follow this advice to uninstall it or not. -- Ticket URL: <https://trac.macports.org/ticket/37921> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #39065: Unable to upgrade Atlas on Snow Leopard 10.6.8
by MacPorts 13 Aug '14

13 Aug '14

#39065: Unable to upgrade Atlas on Snow Leopard 10.6.8 -------------------------+-------------------------------- Reporter: atif.azad@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: -------------------------+-------------------------------- Since I am behind a proxy, I ran the following commands (I am running OS X 10.6.8, and Xcode 3.2.6, macport 2.1.3: sudo port -d sync sudo port upgrade outdated ---> Computing dependencies for atlas ---> Building atlas Error: org.macports.build for port atlas returned: command execution failed Please see the log file for port atlas for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_math_atlas/atlas/main.log Error: Unable to upgrade port: 1 To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets -- Ticket URL: <https://trac.macports.org/ticket/39065> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #32077: enforce-variants gtk2 +universal - @MacPorts version 2.03 - error
by MacPorts 13 Aug '14

13 Aug '14

#32077: enforce-variants gtk2 +universal - @MacPorts version 2.03 - error --------------------------------------------------------------------------------------------------------------------------------+ Reporter: adam.clay@… | Owner: macports-tickets@… Type: defect | Status: new Priority: High | Milestone: Component: ports | Version: 2.0.3 Keywords: Scala, sudo port upgrade --enforce-variants gtk2 +universal , sudo port install fontconfig, sudo port install gtk2 | Port: fontconfig, gtk2, (enforce-variants gtk2 +universal) --------------------------------------------------------------------------------------------------------------------------------+ I am trying to install a free program called Scala that requires installation of MacPorts, and the ports "fontconfig" and "gtk2". These two seemed to install correctly from the terminal with the following commands: sudo port install fontconfig sudo port install gtk2 which tells me (if I understand the way MacPorts works) I installed both Macports, and these specific ports correctly. The instructions then ask me to modify my ".profile" file adding this line: export PATH=/opt/local/bin:/opt/local/sbin:$PATH which I did, and then install the libpng 1.4.5 or Combo Installer, which I did. Then, because I have a 64 bit Imac, I was asked to use the following terminal command: sudo port upgrade --enforce-variants gtk2 +universal, and when doing this I got the following error messsage: Error: Target org.macports.build returned: shell command failed (see log for details) Log for p5.12-xml-parser is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_perl_p5 -xml-parser/p5.12-xml-parser/main.log Error: Unable to upgrade port: 1 Could anyone help me figure out why I cannot do this? -- Ticket URL: <https://trac.macports.org/ticket/32077> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #33673: libpqxx: tests don't work
by MacPorts 12 Aug '14

12 Aug '14

#33673: libpqxx: tests don't work -------------------------------------+-------------------------------------- Reporter: ryandesign@… | Owner: dweber@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.4 Keywords: | Port: libpqxx -------------------------------------+-------------------------------------- "sudo port test libpqxx" doesn't work. It says: {{{ DEBUG: Executing proc-pre-org.macports.test-test-0 sh: initdb: command not found shell command "initdb -D libpqxx-4.0/test_libpqxx" returned error 127 }}} This is not surprising since "initdb" is a command provided by the postgresql ports, and they're never installed anywhere in $PATH. The fix is to call these programs by their correct absolute paths; the attached patch (which should be applied after updating the port to 4.0 using the patches in #33671) fixes this, but then we run into this next error: {{{ DEBUG: Executing proc-pre-org.macports.test-test-0 The files belonging to this database system will be owned by user "macports". This user must also own the server process. The database cluster will be initialized with locale en_US.UTF-8. The default database encoding has accordingly been set to UTF8. The default text search configuration will be set to "english". creating directory libpqxx-4.0/test_libpqxx ... initdb: could not create directory "libpqxx-4.0": Permission denied shell command "/opt/local/lib/postgresql91/bin/initdb -D libpqxx-4.0/test_libpqxx" returned error 1 }}} I don't know postgresql or libpqxx so I'm not sure what needs to be done to fix this. -- Ticket URL: <https://trac.macports.org/ticket/33673> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #31140: gdb 7.3 segfaults when trying to load symbols
by MacPorts 12 Aug '14

12 Aug '14

#31140: gdb 7.3 segfaults when trying to load symbols -----------------------------+---------------------------------------------- Reporter: jwatt@… | Owner: macports-tickets@… Type: defect | Status: new Priority: High | Milestone: Component: ports | Version: 2.0.2 Keywords: gdb | Port: -----------------------------+---------------------------------------------- When I try to load symbols I get a segfault: $ ggdb --quiet (gdb) file /Applications/Firefox.app/Contents/MacOS/firefox Reading symbols from /Applications/Firefox.app/Contents/MacOS/firefox...Segmentation fault $ If I use the version of gdb that comes with Xcode then I don't have this problem. -- Ticket URL: <https://trac.macports.org/ticket/31140> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #37894: Update InsightToolkit to version 4.3
by MacPorts 12 Aug '14

12 Aug '14

#37894: Update InsightToolkit to version 4.3 --------------------+-------------------------------- Reporter: nick@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: | Port: InsightToolkit --------------------+-------------------------------- 4.3 has just been released, and I would like to use it. Could you please update it? If not, I would like to take a go at it as well. http://www.kitware.com/news/home/browse/ITK?2012_12_26&ITK+4.3+Released -- Ticket URL: <https://trac.macports.org/ticket/37894> MacPorts <http://www.macports.org/> Ports system for Mac OS

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