September 2013 - macports-tickets - lists.macosforge.org

[MacPorts] #38806: Wine @ 1.3.13 + Port cmake configure error - build failure
by MacPorts 17 Nov '13

17 Nov '13

#38806: Wine @ 1.3.13 + Port cmake configure error - build failure ----------------------------+-------------------------------- Reporter: geri6383@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: Leopard 64-bit | Port: cmake wine ----------------------------+-------------------------------- I am using Leopard Mac OS X version 10.5.8 Processor 2.4 GHz Intel Core 2 Duo (ie 64-bit) Kernel Version: Darwin 9.8.0 I am trying to install Wine 1.3.13, but I keep on getting the error below. Error: Cmake cannot be installed for the configured universal_archs 'i386 ppc' because it only supports the arch(s) 'i386 x86_64'. I am using XCode 3.1.3 (I also tried Xcode 3.1.4 and have the same issue), XQuartz (aka X11). and have also downloaded Java developer for Mac_OS_X_10.5_9m3425.dmg. Not sure what I am doing wrong, but I would appreciate whatever help I can get to install Wine. Attached is what I entered in the terminal. As you can see, I tried cleaning the cmake port to no avail. I am also attaching the log file for port cmake for the details. Lastly, I tried to enter the command to see the license agreement, but this is supposedly an "unknown option: -license". The instructions I was using said that it may or may not require you to agree to a license. I assumed since I had to agree to licenses when I was downloading all the programs (XCode, Xquartz, wine, java), that this is probably why I did not need to agree to any licenses and consequently why this option is unknown. Thank you in advance for your help! -- Ticket URL: <https://trac.macports.org/ticket/38806> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #33180: port bedtools
by MacPorts 17 Nov '13

17 Nov '13

#33180: port bedtools ---------------------------------+------------------------------------------ Reporter: pengyu.ut@… | Owner: macports-tickets@… Type: request | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: | Port: ---------------------------------+------------------------------------------ See here. http://code.google.com/p/bedtools/ -- Ticket URL: <https://trac.macports.org/ticket/33180> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #31504: canna @3.7p3_3: fails to install if xmkmf is built by clang
by MacPorts 17 Nov '13

17 Nov '13

#31504: canna @3.7p3_3: fails to install if xmkmf is built by clang -----------------------------------+---------------------------------------- Reporter: takanori@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: | Port: -----------------------------------+---------------------------------------- -- Ticket URL: <https://trac.macports.org/ticket/31504> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #38881: try to install pan2
by MacPorts 17 Nov '13

17 Nov '13

#38881: try to install pan2 -----------------------------+-------------------------------- Reporter: william.biggs@… | Owner: macports-tickets@… Type: defect | Status: new Priority: High | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: -----------------------------+-------------------------------- When I try to install pan2 I get this error How do I fix it ? Error: The following dependencies were not installed: gmime gtk2 atk gobject-introspection cairo fontconfig freetype bzip2 libpixman libpng lzo2 xorg-libXext xorg-libX11 xorg-kbproto xorg-libXau xorg-xproto xorg- libXdmcp xorg-libxcb python27 db46 libedit openssl python_select sqlite3 xorg-libpthread-stubs xorg-xcb-proto libxml2 xorg-xextproto xorg-xcb-util xrender xorg-renderproto gdk-pixbuf2 jasper jpeg tiff hicolor-icon-theme pango Xft2 harfbuzz graphite2 icu shared-mime-info xorg-libXcomposite xorg-compositeproto xorg-libXfixes xorg-fixesproto xorg-libXcursor xorg- libXdamage xorg-damageproto xorg-libXi xorg-inputproto xorg-libXinerama xorg-xineramaproto xorg-libXrandr xorg-randrproto gtkspell2 enchant aspell texinfo hunspell readline gtk-doc docbook-xml docbook-xml-4.1.2 docbook- xml-4.2 xmlcatmgr docbook-xml-4.3 docbook-xml-4.4 docbook-xml-4.5 docbook- xml-5.0 docbook-xsl gnome-doc-utils iso-codes libxslt py27-libxml2 rarian intltool p5.12-getopt-long p5.12-pathtools p5.12-scalar-list-utils p5.12 -xml-parser pcre -- Ticket URL: <https://trac.macports.org/ticket/38881> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #39660: emulators/virtualbox41 - New Port Because VirtualBox 4.2.16 Cannot Boot OS X VMs
by MacPorts 16 Nov '13

16 Nov '13

#39660: emulators/virtualbox41 - New Port Because VirtualBox 4.2.16 Cannot Boot OS X VMs -----------------------------+-------------------------- Reporter: rmstonecipher@… | Owner: royliu@… Type: request | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: virtualbox41 -----------------------------+-------------------------- Please refer to upstream tickets linked in [https://www.virtualbox.org/ticket/11490].[[br]] In that and other upstream tickets users recommended using VirtualBox 4.1 for OS X VMs on OS X hosts.[[br]] I would propose creating a virtualbox41 port but do not understand the various patches in the current virtualbox port well enough to modify them to suit VirtualBox 4.1.[[br]] This port may conflict with the virtualbox port since both require kernel modules.[[br]] The current 4.1 series release of VirtualBox is 4.1.26. -- Ticket URL: <https://trac.macports.org/ticket/39660> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40457: NEW: NEURON
by MacPorts 16 Nov '13

16 Nov '13

#40457: NEW: NEURON ------------------------+-------------------------------- Reporter: christsc@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: neuron ------------------------+-------------------------------- [http://www.neuron.yale.edu/neuron/ NEURON] is a simulation environment for neurons and networks of neurons that is [http://www.neuron.yale.edu/neuron/static/bib/usednrn.html widely used] in neuroscience. Some comments on the Portfiles: * A separate port is required for the graphics toolkit (neuron-iv) because it's optional (neuron has a +nogui variant), the source changes more rarely than neuron's, and it's under a different license. * The source tarballs are currently hosted on a mirror because the the version on the [http://www.neuron.yale.edu/ftp/neuron/versions/alpha/ official server] may change its url at any time. * The patch that comes with this Portfile has been [http://www.neuron.yale.edu/hg/neuron/nrn/rev/5ab4d7b9ecb1 accepted upstream] and will be included in the upcoming version 7.4. -- Ticket URL: <https://trac.macports.org/ticket/40457> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40458: Mis-Installed PyPy
by MacPorts 16 Nov '13

16 Nov '13

#40458: Mis-Installed PyPy ----------------------------------------+-------------------------------- Reporter: jfcaron@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: installation configuration | Port: pypy ----------------------------------------+-------------------------------- The MacPorts-supplied PyPy is missing an installation step where it imports the syslog module (creating a cached file somewhere). It can be fixed post-installation by running pypy as root and doing "import syslog", but this should be done during installation. See this thread (with confirmation from the PyPy developers that this is a problem): https://mail.python.org/pipermail/pypy-dev/2013-September/011727.html -- Ticket URL: <https://trac.macports.org/ticket/40458> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40134: matplotlib, tornado and setuptools (broken setup)
by MacPorts 15 Nov '13

15 Nov '13

#40134: matplotlib, tornado and setuptools (broken setup) -------------------------------+-------------------------------- Reporter: andre.dos.anjos@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: | Port: py-matplotlib -------------------------------+-------------------------------- After upgrade to py27-matplotlib @1.3.0, I can't any longer "require" this package using `pkg_resources`/`setuptools`: {{{ $ python ... >>> import pkg_resources >>> pkg_resources.require('matplotlib') pkg_resources.require('matplotlib') Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pkg_resources.py", line 728, in require needed = self.resolve(parse_requirements(requirements)) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pkg_resources.py", line 626, in resolve raise DistributionNotFound(req) pkg_resources.DistributionNotFound: tornado }}} There seems to exist a unresolved dependence to py-tornado that was not brought in with the update. Strangely, just importing `matplotlib` works, but as soon as you try to "require" it through setuptools, it will break. Installing py*-tornado fixes the problem. To fix this problem one would need to add py*-tornado as a MacPort dependence to py*-matplotlib. -- Ticket URL: <https://trac.macports.org/ticket/40134> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #32575: llvm-3.1 fails to build on OSX10.7 / Xcode 4.2
by MacPorts 15 Nov '13

15 Nov '13

#32575: llvm-3.1 fails to build on OSX10.7 / Xcode 4.2 --------------------------------------+------------------------------------- Reporter: jonesc@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: | Port: llvm-3.1 --------------------------------------+------------------------------------- Title says it all ... llvm-3.1 fails to build for me on OSX 10.7 with Xcode 4.2 log file attached. Chris -- Ticket URL: <https://trac.macports.org/ticket/32575> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #39539: Error: Port gnome-keyring is still broken after rebuilding it more than 3 times.
by MacPorts 15 Nov '13

15 Nov '13

#39539: Error: Port gnome-keyring is still broken after rebuilding it more than 3 times. ----------------------------+-------------------------------- Reporter: rahsaan.page@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: ----------------------------+-------------------------------- $ sudo /opt/local/bin/port upgrade outdated ---> Computing dependencies for gnome-keyring ---> Cleaning gnome-keyring ---> Scanning binaries for linking errors: 100.0% ---> Found 3 broken file(s), matching files to ports ---> Found 1 broken port(s), determining rebuild order ---> Rebuilding in order gnome-keyring @2.32.1 ---> Computing dependencies for gnome-keyring ---> Cleaning gnome-keyring ---> Scanning binaries for linking errors: 100.0% ---> Found 3 broken file(s), matching files to ports ---> Found 1 broken port(s), determining rebuild order ---> Rebuilding in order gnome-keyring @2.32.1 ---> Computing dependencies for gnome-keyring ---> Cleaning gnome-keyring ---> Scanning binaries for linking errors: 100.0% ---> Found 3 broken file(s), matching files to ports ---> Found 1 broken port(s), determining rebuild order ---> Rebuilding in order gnome-keyring @2.32.1 ---> Computing dependencies for gnome-keyring ---> Cleaning gnome-keyring ---> Scanning binaries for linking errors: 100.0% ---> Found 3 broken file(s), matching files to ports Error: Port gnome-keyring is still broken after rebuilding it more than 3 times. Error: Please run port -d -y rev-upgrade and use the output to report a bug. Port gnome-keyring still broken after rebuilding 3 time(s) while executing "error "Port $portname still broken after rebuilding [expr $broken_port_counts($portname) - 1] time(s)"" (procedure "revupgrade_scanandrebuild" line 268) invoked from within "revupgrade_scanandrebuild broken_port_counts $opts" (procedure "macports::revupgrade" line 5) invoked from within "macports::revupgrade $opts" (procedure "action_revupgrade" line 2) invoked from within "action_revupgrade $action $portlist $opts" (procedure "action_upgrade" line 25) invoked from within "$action_proc $action $portlist [array get global_options]" (procedure "process_cmd" line 95) invoked from within "process_cmd $remaining_args" invoked from within "if { [llength $remaining_args] > 0 } { # If there are remaining arguments, process those as a command set exit_status [process_cmd $remaining..." (file "/opt/local/bin/port" line 4785) $ sudo /opt/local/bin/port -d -y rev-upgrade DEBUG: Copying /Users/rahsaanpage/Library/Preferences/com.apple.dt.Xcode.plist to /opt/local/var/macports/home/Library/Preferences ---> Scanning binaries for linking errors Could not open /opt/local/lib/libpng14.14.dylib: Error opening or reading file (referenced from /opt/local/bin/gnome-keyring) DEBUG: Marking /opt/local/bin/gnome-keyring as broken DEBUG: Marking /opt/local/lib/libgcr.0.dylib as broken DEBUG: Marking /opt/local/libexec/gnome-keyring-prompt as broken DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/bugpoint DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/lli DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ar DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-as DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-bcanalyzer DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-cov DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-diff DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-dis DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-dwarfdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-extract DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-link DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-mc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-nm DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-objdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-prof DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ranlib DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-rtdyld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-size DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/macho-dump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/opt DEBUG: skipping ppc in /opt/local/share/cmake-2.8/Modules/CPack.OSXScriptLauncher.in since this system can't run it anyway DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/ld64/ld ---> Found 3 broken file(s), matching files to ports ---> Found 1 broken port(s), determining rebuild order DEBUG: Broken: gnome-keyring DEBUG: Processing port gnome-keyring @0:2.32.1_0 DEBUG: Processing port libgnome-keyring @0:2.30.1_1 DEBUG: Processing port libgnomeui @0:2.24.4_1 DEBUG: Processing port gimp2 @0:2.6.11_3 +x11 DEBUG: Processing port gimp-app @0:2.6.0_2 DEBUG: Processing port gimp @0:2.6.11_0 DEBUG: Processing port gimp @0:2.6.11_1 DEBUG: Processing port gimp @0:2.6.12_0 DEBUG: Processing port gimp @0:2.8.0_0 DEBUG: Processing port gimp @0:2.8.2_0 DEBUG: Processing port gimp @0:2.8.4_0 DEBUG: Processing port gimp @0:2.8.6_0 DEBUG: Processing port gimp-jp2 @0:2.2.0_3 DEBUG: Processing port gimp-lqr-plugin @0:0.7.1_0 DEBUG: Processing port gutenprint @0:5.2.3_3 DEBUG: Processing port ufraw @0:0.17_2 DEBUG: Processing port xsane @0:0.996_4 DEBUG: Processing port gimp-app @0:2.6.11_1 DEBUG: Processing port ufraw @0:0.18_0 DEBUG: Processing port ufraw @0:0.18_1 DEBUG: Processing port gimp-app @0:2.6.12_0 DEBUG: Processing port icns-gimp @0:0.1_1 DEBUG: Processing port gimp-jp2 @0:2.2.0_4 DEBUG: Processing port gimp-lqr-plugin @0:0.7.1_1 DEBUG: Processing port gutenprint @0:5.2.7_0 DEBUG: Processing port xsane @0:0.998_0 DEBUG: Processing port gimp-app @0:2.8.0_0 DEBUG: Processing port gimp-jp2 @0:2.2.0_5 DEBUG: Processing port gutenprint @0:5.2.7_1 DEBUG: Processing port xsane @0:0.998_1 DEBUG: Processing port gimp-app @0:2.8.2_1 DEBUG: Processing port ufraw @0:0.18_2 DEBUG: Processing port ufraw @0:0.18_3 DEBUG: Processing port xsane @0:0.998_2 DEBUG: Processing port ufraw @0:0.19.2_0 DEBUG: Processing port gutenprint @0:5.2.9_0 DEBUG: Processing port gimp-jp2 @0:2.2.0_6 DEBUG: Processing port gutenprint @0:5.2.9_1 DEBUG: Processing port gimp2 @0:2.6.11_5 +x11 DEBUG: Processing port gimp2 @0:2.6.11_6 +python27+x11 DEBUG: Processing port gimp2 @0:2.6.11_9 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.6.12_0 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.6.12_1 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.8.0_0 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.8.0_2 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.8.2_4 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.8.4_2 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.8.4_3 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.8.4_4 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.8.4_5 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.8.4_6 +help_browser+python27 DEBUG: Processing port gimp2 @0:2.8.6_0 +help_browser+python27 DEBUG: Processing port libgnomeui @0:2.24.5_0 DEBUG: Processing port libgnomeui @0:2.24.5_2 DEBUG: Processing port libsoup @0:2.34.3_0 DEBUG: Processing port webkit-gtk @1:1.2.7_1 DEBUG: Processing port webkit-gtk @1:1.6.3_4 +svg+video DEBUG: Processing port webkit-gtk @1:1.6.3_5 +video DEBUG: Processing port webkit-gtk @1:1.10.2_0 +video DEBUG: Processing port webkit-gtk @2:1.10.2_1 +video DEBUG: Processing port webkit-gtk @2:1.10.2_2 +video DEBUG: Processing port webkit-gtk @1:2.0.0_0 +video DEBUG: Processing port webkit-gtk @1:2.0.0_2 +video DEBUG: Processing port webkit-gtk @2:2.0.1_0 +video DEBUG: Processing port webkit-gtk @2:2.0.2_0 +video DEBUG: Processing port webkit-gtk @2:2.0.2_1 +video DEBUG: Processing port webkit-gtk @2:2.0.3_0 +video DEBUG: Processing port libsoup @0:2.38.0_1 DEBUG: Processing port libgnomeui @0:2.24.5_3 DEBUG: Processing port libsoup @0:2.38.1_0 DEBUG: Processing port libgnomeui @0:2.24.5_4 DEBUG: Processing port libsoup @0:2.40.3_0 DEBUG: Processing port libsoup @0:2.42.0_0 DEBUG: Processing port libgnomeui @0:2.24.5_5 DEBUG: Processing port libsoup @0:2.42.0_1 DEBUG: Processing port libsoup @0:2.42.1_0 DEBUG: Processing port libsoup @0:2.42.2_0 DEBUG: Processing port libgnomeui @0:2.24.5_6 DEBUG: Processing port libgnomeui @0:2.24.5_8 +x11 ---> Rebuilding in order gnome-keyring @2.32.1 DEBUG: epoch: in tree: 1 installed: 1 DEBUG: gnome-keyring 2.32.1_0 exists in the ports tree DEBUG: gnome-keyring 2.30.3_6 is the latest installed DEBUG: gnome-keyring 2.32.1_0 is active DEBUG: Merging existing variants '' into variants DEBUG: new fully merged portvariants: DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/gnome /gnome-keyring DEBUG: OS darwin/12.4.0 (Mac OS X 10.8) arch i386 DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided DEBUG: org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided DEBUG: org.macports.distfiles registered provides 'distfiles', a pre- existing procedure. Target override will not be provided DEBUG: adding the default universal variant DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf DEBUG: Not following dependencies Skipping deactivate gnome-keyring @2.32.1_0 (dry run) Skipping activate gnome-keyring @2.32.1_0 (dry run) DEBUG: Rebuilding port gnome-keyring finished with status 0 Warning: If this was no dry run, rev-upgrade would now run the checks again to find unresolved and newly created problems -- Ticket URL: <https://trac.macports.org/ticket/39539> MacPorts <http://www.macports.org/> Ports system for OS X

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