September 2013 - macports-tickets - lists.macosforge.org

[MacPorts] #25362: mpich@1.2.7p1 fail to build in Mac OS X snow leopard
by MacPorts 05 Sep '13

05 Sep '13

#25362: mpich(a)1.2.7p1 fail to build in Mac OS X snow leopard -------------------------------------+-------------------------------------- Reporter: josem.climate@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.1 Keywords: | Port: -------------------------------------+-------------------------------------- I am using Xcode 3.2.2 for Mac SDK 10.6 {{{ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_mpich/work/mpich-1.2.7p1/bin/mpicc -o overtake overtake.o test.o :info:build ld: duplicate symbol _MPIR_Setup_base_datatype in /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_mpich/work/mpich-1.2.7p1/lib/libmpich.a(initdte.o) and /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_mpich/work/mpich-1.2.7p1/lib/libpmpich.a(initdte.o) :info:build collect2: ld returned 1 exit status :info:build make[4]: *** [overtake] Error 1 :info:build make[3]: [linktest1] Error 2 (ignored) :info:build Could not link a C program with MPI libraries :info:build make[3]: *** [linktest1] Error 1 :info:build make[2]: *** [linktest] Error 2 :info:build make[1]: *** [mpi-lib-test] Error 2 :info:build make: *** [mpi] Error 2 :info:build shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_mpich/work/mpich-1.2.7p1" && /usr/bin/make -j2 " returned error 2 :error:build Target org.macports.build returned: shell command failed :debug:build Backtrace: shell command failed while executing "command_exec build" (procedure "portbuild::build_main" line 8) invoked from within "$procedure $targetname" }}} -- Ticket URL: <http://trac.macports.org/ticket/25362> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #40387: Valgrind fails running on large project
by MacPorts 05 Sep '13

05 Sep '13

#40387: Valgrind fails running on large project ---------------------+-------------------------------- Reporter: barto@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: | Port: valgrind ---------------------+-------------------------------- Valgrind on Linux (without the dsymutil=yes line) runs successfully. Running valgrind with: {{{ valgrind --tool=memcheck \ --leak-check=full \ --leak-resolution=high \ --read-var-info=yes \ --track-origins=yes \ --dsymutil=yes \ host/ui3/ui3 -j }}} generates the following error. {{{ UNKNOWN workq_ops option 32 valgrind: m_syswrap/syswrap-amd64-darwin.c:460 (void wqthread_hijack(Addr, Addr, Addr, Addr, Int, Addr)): Assertion 'VG_(is_valid_tid)(tid)' failed. ==92625== at 0x238034A9C: ??? ==92625== by 0x238034A50: ??? ==92625== by 0x2380BDD4E: ??? sched status: running_tid=0 Thread 1: status = VgTs_WaitSys ==92625== at 0x11E93686: mach_msg_trap (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x15CF5C24: _scsclient_FindService (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15CF5AF7: SCClientSession::createService(char const*, unsigned int) (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15CF59D3: SCSession::findOrCreateService(char const*, unsigned int) (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15CF51D7: scCreateSystemServiceVersion (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15CF8AE6: FileIDTreeGetCachedPort (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15CF8938: FSNodeStorageGetAndLockCurrentUniverse (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15CF87C8: FileIDTreeGetAndLockVolumeEntryForDeviceID (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15CFC413: FSMount::FSMount(unsigned int, FSMountNumberType, short*, unsigned int const*) (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15CFADE7: PathGetObjectInfo(char const*, unsigned int, unsigned int, short*, unsigned int*, unsigned int*, char*, unsigned int*, unsigned char*) (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15CFAC2C: FSPathMakeRefInternal(unsigned char const*, unsigned int, unsigned int, FSRef*, unsigned char*) (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x13AA9AD1: _CFGetFSRefFromURL (in /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation) ==92625== by 0x13AA99D8: CFURLGetFSRef (in /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation) ==92625== by 0x13AB1B06: _CFBundleCopyInfoDictionaryInResourceForkWithAllocator (in /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation) ==92625== by 0x15CF6185: GetBugsForOurBundleIDFromCoreservicesd (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15CF5EFB: _CSCheckFix (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15D09F5B: _Gestalt_SystemVersion (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x15D09D53: Gestalt (in /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore) ==92625== by 0x1229CB55: global constructors keyed to qVersion() (in /opt/local/QtSDK/Desktop/Qt/4.8.3/gcc/lib/QtCore.framework/Versions/4/QtCore) ==92625== by 0x7FFF5FC13377: ImageLoaderMachO::doModInitFunctions(ImageLoader::LinkContext const&) (in /usr/lib/dyld) ==92625== by 0x7FFF5FC13761: ImageLoaderMachO::doInitialization(ImageLoader::LinkContext const&) (in /usr/lib/dyld) ==92625== by 0x7FFF5FC1006D: ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int, ImageLoader::InitializerTimingList&) (in /usr/lib/dyld) ==92625== by 0x7FFF5FC0FFC3: ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int, ImageLoader::InitializerTimingList&) (in /usr/lib/dyld) ==92625== by 0x7FFF5FC0FFC3: ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int, ImageLoader::InitializerTimingList&) (in /usr/lib/dyld) ==92625== by 0x7FFF5FC0FEB9: ImageLoader::runInitializers(ImageLoader::LinkContext const&, ImageLoader::InitializerTimingList&) (in /usr/lib/dyld) ==92625== by 0x7FFF5FC01FBF: dyld::initializeMainExecutable() (in /usr/lib/dyld) ==92625== by 0x7FFF5FC05B03: dyld::_main(macho_header const*, unsigned long, int, char const**, char const**, char const**, unsigned long*) (in /usr/lib/dyld) ==92625== by 0x7FFF5FC01396: dyldbootstrap::start(macho_header const*, int, char const**, long, macho_header const*, unsigned long*) (in /usr/lib/dyld) ==92625== by 0x7FFF5FC0105D: _dyld_start (in /usr/lib/dyld) ==92625== by 0x1: ??? ==92625== by 0x10556A206: ??? ==92625== by 0x10556A213: ??? Thread 2: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 3: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 4: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 5: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 6: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 7: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 8: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 9: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 10: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 11: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 12: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 13: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 14: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) Thread 15: status = VgTs_WaitSys ==92625== at 0x11E950FA: __psynch_cvwait (in /usr/lib/system/libsystem_kernel.dylib) ==92625== by 0x11AF9FEB: std::condition_variable::wait(std::unique_lock<std::mutex>&) (in /opt/local/lib/gcc48/libstdc++.6.dylib) ==92625== by 0x11D2C7A1: _pthread_start (in /usr/lib/system/libsystem_c.dylib) ==92625== by 0x11D191E0: thread_start (in /usr/lib/system/libsystem_c.dylib) }}} -- Ticket URL: <https://trac.macports.org/ticket/40387> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #39428: mpich should have variant +gcc47 by default
by MacPorts 05 Sep '13

05 Sep '13

#39428: mpich should have variant +gcc47 by default -------------------------+-------------------------------- Reporter: dstrubbe@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: haspatch | Port: mpich -------------------------+-------------------------------- For ports such as arpack and netcdf-fortran which have a +mpich variant, which in turns needs mpif77, it would be helpful if mpich by default used a variant that provides a Fortran wrapper. Otherwise, listing this port as a dependency just leads to an unusable being installed that doesn't satisfy the dependency. +gcc47 seems the most popular among ports now. That is the one used for openmpi, for example. I have provided a patch adapted from the openmpi Portfile. -- Ticket URL: <https://trac.macports.org/ticket/39428> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40286: Valgrind prohibits use of --tool=massif
by MacPorts 05 Sep '13

05 Sep '13

#40286: Valgrind prohibits use of --tool=massif ----------------------+-------------------------------- Reporter: barto@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: valgrind | Port: ----------------------+-------------------------------- straight up port install of valgrind: ---> Fetching distfiles for valgrind ---> Verifying checksums for valgrind ---> Extracting valgrind ---> Applying patches to valgrind ---> Configuring valgrind ---> Building valgrind ---> Staging valgrind into destroot ---> Installing valgrind @3.8.1_1 ---> Activating valgrind @3.8.1_1 ---> Cleaning valgrind ---> Updating database of binaries: 100.0% ---> Scanning binaries for linking errors: 100.0% ---> No broken files found. 522_ valgrind --tool=massif ./ui3 -j valgrind: Bad option: --gen-suppressions=yes valgrind: Can't use --gen-suppressions= with Massif valgrind: because it doesn't generate errors. valgrind: Use --help for more information or consult the user manual. Using the standard tool shows the 'normal' output. 525_ valgrind --tool=memcheck ./ui3 -j ==90467== Memcheck, a memory error detector ==90467== Copyright (C) 2002-2012, and GNU GPL'd, by Julian Seward et al. ==90467== Using Valgrind-3.8.1 and LibVEX; rerun with -h for copyright info ==90467== Command: ./ui3 -j ==90467== ==90467== WARNING: Support on MacOS 10.8 is experimental and mostly broken. -- Ticket URL: <https://trac.macports.org/ticket/40286> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40083: certsync startupitem modification?
by MacPorts 05 Sep '13

05 Sep '13

#40083: certsync startupitem modification? -------------------------+----------------------- Reporter: dluke@… | Owner: landonf@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: | Port: certsync -------------------------+----------------------- Would it be reasonable to use startupitem.executable instead of startupitem.start in the certsync port? startupitem.executable is the preferred one to use unless something extra is required. The generated wrapper script (when using startupitem.start) has a Stop() method that references a script that doesn't exist (so Stop and Restart won't work). -- Ticket URL: <https://trac.macports.org/ticket/40083> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40280: Update midori @0.4.7 - whitespace changes only
by MacPorts 05 Sep '13

05 Sep '13

#40280: Update midori @0.4.7 - whitespace changes only -------------------------+-------------------------------- Reporter: c.herbig@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: haspatch | Port: midori -------------------------+-------------------------------- Replaced tabs with 4 spaces, changed indentation to multiples of 4 spaces. Standard is 5x, with 6x or 7x inside {}'s to improve readability. Put dependencies, etc on one line each for better readability. -- Ticket URL: <https://trac.macports.org/ticket/40280> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40374: icons appear as unix executable
by MacPorts 05 Sep '13

05 Sep '13

#40374: icons appear as unix executable ----------------------------+------------------------- Reporter: je1975@… | Owner: wsiegrist@… Type: defect | Status: new Priority: Normal | Milestone: Component: server/hosting | Version: 2.2.0 Keywords: icons | Port: ----------------------------+------------------------- Apologies if this is the wrong place to log this issue but all the file icons in my server share (word files, excel, quark) appear as unix executables. Adding the relevant file suffix on the end of the filename (e.g. .docx, .qxd) fixes the file association but there are thousands of files. Is this just a samba issue? Icons look fine when viewed from the server itself OSX 10.8.4, samba 3.615 installed just get the unix icon when viewed from the client end. -- Ticket URL: <https://trac.macports.org/ticket/40374> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40379: hatari: update to 1.7.0
by MacPorts 05 Sep '13

05 Sep '13

#40379: hatari: update to 1.7.0 ---------------------+-------------------------------- Reporter: james@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: | Port: hatari ---------------------+-------------------------------- Portfile diff attached. -- Ticket URL: <https://trac.macports.org/ticket/40379> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40381: openssh: make kerberos5 support optional
by MacPorts 05 Sep '13

05 Sep '13

#40381: openssh: make kerberos5 support optional -------------------------+-------------------------------- Reporter: ionic@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: haspatch | Port: openssh -------------------------+-------------------------------- Add a kerberos5 variant for optional kerberos5 support. Make it the default, though, to be compatible with former openssh ports. -- Ticket URL: <https://trac.macports.org/ticket/40381> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40332: wgrib2: Variant gcc48 conflicts with itself
by MacPorts 04 Sep '13

04 Sep '13

#40332: wgrib2: Variant gcc48 conflicts with itself -------------------------------+----------------------- Reporter: macsforever2000@… | Owner: takeshi@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: | Port: wgrib2 -------------------------------+----------------------- {{{ $ port info wgrib2 Error: wgrib2: Variant gcc48 conflicts with gcc48 Error: Unable to open port: Error evaluating variants }}} Indeed in the Portfile: {{{ variant gcc48 conflicts g95 gcc44 gcc45 gcc46 gcc47 gcc48 description {build iplib with gcc48 (alpha)} { depends_lib-append path:lib/libgcc/libgcc_s.1.dylib:libgcc depends_build-append port:gcc48 } }}} -- Ticket URL: <https://trac.macports.org/ticket/40332> MacPorts <http://www.macports.org/> Ports system for OS X

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