May 2014 - macports-tickets - lists.macosforge.org

[MacPorts] #43520: error import scipy.stats
by MacPorts 03 May '14

03 May '14

#43520: error import scipy.stats --------------------------------------+-------------------------------- Reporter: ollinger_s@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: import error scipy.stats | Port: py-scipy --------------------------------------+-------------------------------- Hi, I've the following configuration on my Mac OS X 10.6.8 (all installed with MacPort): {{{ python27 @2.7.6_0 (active) py27-scipy @0.13.3_1+gcc48 (active) py27-numpy @1.8.1_0 (active) }}} All seems to bee allright with this installation, but I can't import scipy.stats. The following error occur: {{{ >>> import scipy.stats Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/stats/__init__.py", line 324, in <module> from .stats import * File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/stats/stats.py", line 242, in <module> import scipy.special as special File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/special/__init__.py", line 531, in <module> from ._ufuncs import * File "__init__.pxd", line 155, in init scipy.special._ufuncs (scipy/special/_ufuncs.c:20976) ValueError: numpy.dtype has the wrong size, try recompiling }}} I've uninstall all the previous version of python27, numpy and scipy. I've uninstall and reinstall the current version of numpy and scipy. But the problem still persist. Do you have any idea to solve this problem? Best regards, Sandrine -- Ticket URL: <https://trac.macports.org/ticket/43520> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #43541: ml: configure: error: cannot compile a simple Fortran program
by MacPorts 02 May '14

02 May '14

#43541: ml: configure: error: cannot compile a simple Fortran program --------------------------+-------------------- Reporter: ryandesign@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: | Port: ml --------------------------+-------------------- From the buildbot: {{{ ---> Configuring ml DEBUG: Using compiler 'Xcode Clang' DEBUG: Executing proc-pre-org.macports.configure-configure-0 DEBUG: Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: DEBUG: Executing org.macports.configure (ml) DEBUG: Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O3 -mtune=native -fPIC -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O3 -mtune=native -fPIC -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.9' CXX='/usr/bin/clang++' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_mports_dports_math_ml/ml/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O3 -mtune=native -fPIC -m64' LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64' FCFLAGS='-pipe -Os -m64' OBJC='/usr/bin/clang' OBJCXX='/usr/bin/clang++' INSTALL='/usr/bin/install -c' OBJCFLAGS='-pipe -Os -arch x86_64' OBJCXXFLAGS='-pipe -Os -arch x86_64' FFLAGS='-pipe -O3 -mtune=native -fPIC -m64' CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang' DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_mports_dports_math_ml/ml/work/ml-6.2" && ./configure --prefix=/opt/local --disable-ml-epetra --disable-ml- aztecoo --disable-ml-examples --disable-tests --with-blas='-framework vecLib' --with-lapack='-framework Accelerate'' DEBUG: Executing command line: cd "/opt/local/var/macports/build/_opt_mports_dports_math_ml/ml/work/ml-6.2" && ./configure --prefix=/opt/local --disable-ml-epetra --disable-ml- aztecoo --disable-ml-examples --disable-tests --with-blas='-framework vecLib' --with-lapack='-framework Accelerate' ---------------------------------------- Running ML Configure Script ---------------------------------------- checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... i686-apple-darwin13.1.0 checking host system type... i686-apple-darwin13.1.0 checking target system type... i686-apple-darwin13.1.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking how to create a ustar tar archive... gnutar checking whether we are using MPI... no checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether /usr/bin/clang++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of /usr/bin/clang++... gcc3 checking whether we are using the GNU C compiler... yes checking whether /usr/bin/clang accepts -g... yes checking for /usr/bin/clang option to accept ISO C89... none needed checking dependency style of /usr/bin/clang... gcc3 checking for f77... no checking for g77... no checking for gfortran... no checking for f90... no checking for xlf90... no checking for f95... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking for ranlib... ranlib checking finding build directory... /opt/local/var/macports/build/_opt_mports_dports_math_ml/ml/work/ml-6.2 checking whether additional CCFLAGS flags should be added... no checking whether additional CXXFLAGS flags should be added... no checking whether additional CFLAGS flags should be added... no checking whether additional FFLAGS flags should be added... no checking whether additional libraries are needed... no checking whether additional LDFLAGS flags should be added... no checking for special archiver command... none checking how to run the C++ preprocessor... /usr/bin/clang++ -E checking whether to build export makefiles... yes checking for perl... yes checking whether gnumake specific code should be enabled... no checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking cstdlib usability... yes checking cstdlib presence... yes checking for cstdlib... yes checking cstdio usability... yes checking cstdio presence... yes checking for cstdio... yes checking cassert usability... yes checking cassert presence... yes checking for cassert... yes checking cmath usability... yes checking cmath presence... yes checking for cmath... yes checking iomanip usability... yes checking iomanip presence... yes checking for iomanip... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking string usability... yes checking string presence... yes checking for string... yes checking malloc.h usability... no checking malloc.h presence... no checking for malloc.h... no checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for inline... inline checking whether the compiler implements namespaces... yes checking whether the compiler supports Standard Template Library... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler supports the mutable keyword... yes checking whether the compiler accepts the new for scoping rules... yes checking whether the compiler recognizes std::sprintf as supported IO function... yes checking whether /usr/bin/clang recognizes __PRETTY_FUNCTION__... yes checking whether to use ml_newtpe... yes checking whether to use ml_enrich... no checking whether to use ml_aztec2_1... no checking whether to use ml_complex_maxwell... no checking whether to use ml_timing... no checking whether to use ml_memory_checking... no checking whether to use ml_flops... no checking whether to use ml_benchmarking... no checking whether to use ml_superlu... no checking whether to use ml_superlu2... no checking whether to use ml_superlu_dist... no checking whether to use ml_metis... no checking whether to use ml_parmetis2x... no checking whether to use ml_parmetis3x... no checking whether to use ml_arpack... no checking whether to use ml_parpack... no checking whether to use ml_parasails... no checking whether to use ml_nox... no checking whether to use ml_zoltan... no checking whether to use ml_zoltan3... no checking whether to use petsc... no checking whether to build optional epetra dependent code in ml... no checking whether to build optional amesos dependent code in ml... no checking whether to build optional ifpack dependent code in ml... no checking whether to build optional teuchos dependent code in ml... no checking whether to build optional aztecoo dependent code in ml... no checking whether to build optional epetraext dependent code in ml... no checking whether to build optional isorropia dependent code in ml... no checking whether to build optional galeri dependent code in ml... no checking whether to use ml-examples... no checking whether to use tests... no checking whether to use ml-tests... no checking whether to use libcheck... yes checking whether additional library search paths defined... no checking whether additional include search paths defined... no checking how to get verbose linking output from ... configure: WARNING: compilation failed checking for Fortran 77 libraries of ... checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... configure: error: cannot compile a simple Fortran program See `config.log' for more details. Command failed: cd "/opt/local/var/macports/build/_opt_mports_dports_math_ml/ml/work/ml-6.2" && ./configure --prefix=/opt/local --disable-ml-epetra --disable-ml- aztecoo --disable-ml-examples --disable-tests --with-blas='-framework vecLib' --with-lapack='-framework Accelerate' Exit code: 1 }}} -- Ticket URL: <https://trac.macports.org/ticket/43541> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #43540: py-ferari build fails
by MacPorts 02 May '14

02 May '14

#43540: py-ferari build fails --------------------------+----------------------- Reporter: ryandesign@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: | Port: py-ferari --------------------------+----------------------- From the buildbot: {{{ ---> Building py27-ferari DEBUG: Executing proc-pre-org.macports.build-build-0 DEBUG: Executing org.macports.build (py27-ferari) DEBUG: Environment: CPATH='/opt/local/include' CFLAGS='' CXXFLAGS='' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.9' CXX='/usr/bin/clang++' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build /_opt_mports_dports_python_py-ferari/py27-ferari/work/.CC_PRINT_OPTIONS' F90FLAGS='' LDFLAGS='' FCFLAGS='' OBJC='/usr/bin/clang' OBJCFLAGS='' FFLAGS='' CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang' DEBUG: Assembled command: 'cd "/opt/local/var/macports/build /_opt_mports_dports_python_py-ferari/py27-ferari/work/208a515cad05" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build' DEBUG: Executing command line: cd "/opt/local/var/macports/build /_opt_mports_dports_python_py-ferari/py27-ferari/work/208a515cad05" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build sh: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7: No such file or directory Command failed: cd "/opt/local/var/macports/build /_opt_mports_dports_python_py-ferari/py27-ferari/work/208a515cad05" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build Exit code: 127 }}} Missing dependency on pythonXY... -- Ticket URL: <https://trac.macports.org/ticket/43540> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #43547: py27-matplotlib Instalation fails
by MacPorts 02 May '14

02 May '14

#43547: py27-matplotlib Instalation fails ---------------------------+-------------------------------- Reporter: unai.herran@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: | Port: ---------------------------+-------------------------------- While doing the instalation of py27-matplot I receive the following error. ---> Computing dependencies for py27-matplotlib ---> Building py27-matplotlib Error: org.macports.build for port py27-matplotlib returned: command execution failed Please see the log file for port py27-matplotlib for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py-matplotlib/py27-matplotlib/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port py27-matplotlib failed Macintosh:~ unaiherran1$ sudo port install py27-matplotlib ---> Computing dependencies for py27-matplotlib ---> Building py27-matplotlib Error: org.macports.build for port py27-matplotlib returned: command execution failed Please see the log file for port py27-matplotlib for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py-matplotlib/py27-matplotlib/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port py27-matplotlib failed not sure if its a bug or was just caused by a failed installation attemp -- Ticket URL: <https://trac.macports.org/ticket/43547> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #38277: qt4-mac hanging on intsallation/update
by MacPorts 02 May '14

02 May '14

#38277: qt4-mac hanging on intsallation/update ------------------------+-------------------------------- Reporter: harperic@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: ------------------------+-------------------------------- I am trying to install py32-pyqt4 on my mac running OS X 10.6. Currently, macports is hanging on qt4: Attempting to fetch qt4-mac-4.8.4_6.darwin_10.x86_64.tbz2 from http://packages.macports.org/qt4-mac It has been sitting here for a while now, over half hour, so I just wanted to bring to your attention. -- Ticket URL: <https://trac.macports.org/ticket/38277> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #41942: nemiver @0.9.5 new Portfile
by MacPorts 02 May '14

02 May '14

#41942: nemiver @0.9.5 new Portfile ------------------------+-------------------------------- Reporter: juanrgar@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: nemiver ------------------------+-------------------------------- It requires a big patch to compile on 10.9 since with the libc++ all tr1 classes are gone. I plan to split this patch into several smaller pieces and send them to the nemiver mailing list. Also, although I think nemiver only relies on gdb and glib, mainly, I've observed the following issues: - A log message is printed indicating that nemiver couldn't obtain process information. - Hitting the Run button after loading a binary makes nemiver enter an unusable state and a lot of glib warning messages are printed. However, the main functionality I think it's there: stepping in and out, registers values, variables values, output console, ... -- Ticket URL: <https://trac.macports.org/ticket/41942> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #40502: port install expat fails on OS X 10.9
by MacPorts 02 May '14

02 May '14

#40502: port install expat fails on OS X 10.9 -------------------------------+-------------------------------- Reporter: richard.t.lloyd@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: MacPorts Future Component: ports | Version: 2.2.0 Keywords: | Port: -------------------------------+-------------------------------- I'm trying to install RVM on Maverick using the pre-release of Xcode - command line tools installed. Specifics on the system are:[[BR]] {{{ OS X Version 10.9 Build 13AS24d Xcode 5.0 Build 5A11386k Apple LLVM version 5.0 (clang-500.1.74) (based on LLVM 3.3svn) Target: x86_64-apple-darwin13.0.0 Thread model: posix }}} The problem occurs when trying to install a dependencie, expat. I've installed a fresh version of MacPort2.2.0 from source on my system which I then run via sudo. Screen output is: '''128 > sudo port'''[[BR]] ''Password:''[[BR]] ''MacPorts 2.2.0''[[BR]] ''Entering interactive mode... ("help" for help, "quit" to quit)''[[BR]] '''[Users/richardlloyd] >''' ''install expat''[[BR]] ''invalid syntax: should be "try body ?catch {type-list ?ecvar? ?msgvar? ?infovar?} body ...? ?finally body?"''[[BR]] ''Please see the log file for port expat for details:''[[BR]] '' /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_textproc_expat/expat/main.log''[[BR]] ''To report a bug, follow the instructions in the guide:''[[BR]] http://guide.macports.org/#project.tickets[[BR]] ''Error: Processing of port expat failed''[[BR]] '''[Users/richardlloyd] >'''[[BR]] I'm attaching the expat logfile mentioned above. I understand the caveats re mac developer / non-disclosure / limited- availability. I hit this problem while trying to install rvm in order to limp past the dreaded certificate verify failed (OpenSSL::SSL::SSLError) bug. Any guidance would be appreciated. Most surely bleeding edge technology here... -- Ticket URL: <https://trac.macports.org/ticket/40502> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #23133: screen tries to use libelf
by MacPorts 02 May '14

02 May '14

#23133: screen tries to use libelf -------------------------------------+-------------------------------------- Reporter: ryandesign@… | Owner: digdog@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: screen -------------------------------------+-------------------------------------- libelf is installed non-universal on my system. When installing screen universal, I see this output at the end of the build phase: {{{ /usr/bin/gcc-4.2 -L/opt/local/lib -arch x86_64 -arch i386 -o screen screen.o ansi.o fileio.o mark.o misc.o resize.o socket.o search.o tty.o term.o window.o utmp.o loadav.o putenv.o help.o termcap.o input.o attacher.o pty.o process.o display.o comm.o kmapdef.o acls.o braille.o braille_tsi.o logfile.o layer.o sched.o teln.o nethack.o encoding.o -lncurses -lelf ld: warning: in /opt/local/lib/libelf.a, file is not of required architecture }}} Note this does not stop the build; the port completes installation. Previously in the configure phase it said: {{{ checking elf.h usability... no checking elf.h presence... no checking for elf.h... no }}} screen does not declare a dependency on libelf so it should not use libelf. -- Ticket URL: <http://trac.macports.org/ticket/23133> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #41375: sumo: update to 0.18.0
by MacPorts 02 May '14

02 May '14

#41375: sumo: update to 0.18.0 --------------------------+-------------------------------- Reporter: ryandesign@… | Owner: jens.fahnenbruck@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: haspatch | Port: sumo --------------------------+-------------------------------- This patch updates sumo to 0.18.0, fixes the livecheck, updates the homepage, rewrites the master_sites to avoid redirects. It's untested because sumo does not build on the two systems I have readily available (Mavericks: #40960; Leopard: #41374). -- Ticket URL: <https://trac.macports.org/ticket/41375> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #43237: destroot.config setting to manage configuration files
by MacPorts 02 May '14

02 May '14

#43237: destroot.config setting to manage configuration files -------------------------+-------------------------------- Reporter: jul_bsd@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: -------------------------+-------------------------------- Like destroot.keepdirs, a command to declare a file as a configuration should exist. listed filed would be - move to ${prefix}/share/examples/${name} - if not existing in current setup, copy to normal location in post- activate - on post-deactivate, IF file unchanged (can compare to example files or better stored a hash w package receipt), removed As an example, I would point on Openbsd @sample setting http://www.openbsd.org/faq/ports/specialtopics.html#Config http://www.openbsd.org/cgi-bin/cvsweb/ports/net/net-snmp/pkg/PLIST- main?annotate=1.17 -- Ticket URL: <https://trac.macports.org/ticket/43237> MacPorts <http://www.macports.org/> Ports system for OS X

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