September 2014 - macports-tickets - lists.macosforge.org

[MacPorts] #36551: openmotif @2.3.3 -- Undefined symbols for architecture x86_64: "_main"
by MacPorts 02 Sep '14

02 Sep '14

#36551: openmotif @2.3.3 -- Undefined symbols for architecture x86_64: "_main" ----------------------+-------------------------------- Reporter: ggpolo@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: linker | Port: openmotif ----------------------+-------------------------------- Hello, After some time without upgrading, I decided to do so yesterday and moved everything I could to +universal. Apparently, most of it went fine except for openmotif (which I need for geomview). I searched for related tickets and the best one I found was #24237, but all of the openmotif deps were built with +universal (except for xbitmaps). I get the following linker error when running "port install openmotif +universal": {{{ /usr/bin/clang -fno-strict-aliasing -arch x86_64 -arch i386 -Wall -g -fno- strict-aliasing -Wno-unused -Wno-comment -fno-tree-ter -I/opt/local/include -I/opt/local/include/freetype2 -arch x86_64 -arch i386 -o wmluiltok wmluiltok.o -L/opt/local/lib /opt/local/lib/libXp.dylib /opt/local/lib/libXext.dylib /opt/local/lib/libXft.dylib /opt/local/lib/libfontconfig.dylib /opt/local/lib/libiconv.dylib /opt/local/lib/libexpat.dylib /opt/local/lib/libfreetype.dylib -lbz2 /opt/local/lib/libXrender.dylib /opt/local/lib/libX11.dylib /opt/local/lib/libxcb.dylib /opt/local/lib/libXau.dylib /opt/local/lib/libXdmcp.dylib /opt/local/lib/libjpeg.dylib /opt/local/lib/libpng15.dylib -lz Undefined symbols for architecture x86_64: "_main", referenced from: -u command line option ld: symbol(s) not found for architecture x86_64 }}} Any ideas ? I got Xcode 4.5.1 and OS X 10.8.2. The same problem happens if I opt to perform openmotif -universal. Thanks for your time. -- Ticket URL: <https://trac.macports.org/ticket/36551> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #44861: New port: hatools 2.14
by MacPorts 02 Sep '14

02 Sep '14

#44861: New port: hatools 2.14 ----------------------------+-------------------------------- Reporter: mschamschula@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.1 Keywords: | Port: hatools ----------------------------+-------------------------------- I've create a port of hatools, version 2.14: {{{ The hatools provide reliable and easy-to-use locking and timeout mechanisms for shell scripts. halockrun provides a simple and reliable way to implement a locking in shell scripts. A typical usage for halockrun is to prevent cronjobs to run simultanously. halockrun's implementation makes it very resilient to all kind of stale locks. hatimerun provides a time-out mechanism that can be used from shell scripts. hatimerun can set multiple actions--signals to be sent--on multiple timeouts. }}} -- Ticket URL: <https://trac.macports.org/ticket/44861> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #44793: gst-plugins-bad should provide a config without x11
by MacPorts 02 Sep '14

02 Sep '14

#44793: gst-plugins-bad should provide a config without x11 ---------------------------------+-------------------------------- Reporter: stephansundermann@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.1 Keywords: | Port: ---------------------------------+-------------------------------- gst-plugins-bad depends on mesa which will install x11. There should be a variant which doesn't depend on mesa because glimagevideosink does not work when x11 is installed. -- Ticket URL: <https://trac.macports.org/ticket/44793> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #44762: mod_wsgi crashes
by MacPorts 02 Sep '14

02 Sep '14

#44762: mod_wsgi crashes --------------------------+-------------------------------- Reporter: n.gilbert@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.1 Keywords: wsgi, apache | Port: mod_wsgi --------------------------+-------------------------------- I have apache2 @2.2.27_0+preforkmpm, python27 @2.7.8_1 and mod_wsgi @4.2.7_0+python27 installed in Mac OS X 10.9.4. Enabling "LoadModule wsgi_module modules/mod_wsgi.so" results in a crash: Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 mod_wsgi.so 0x00000001101fec13 wsgi_python_init + 55 1 mod_wsgi.so 0x00000001102000da wsgi_hook_child_init + 133 2 httpd 0x000000010f30c140 ap_run_child_init + 51 3 httpd 0x000000010f32fa6a child_main + 263 4 httpd 0x000000010f32f2fc make_child + 207 5 httpd 0x000000010f32ed68 ap_mpm_run + 2089 6 httpd 0x000000010f3114ce main + 2314 7 libdyld.dylib 0x00007fff8ef675fd start + 1 Commenting out the LoadModule line allows Apache to run, but of course without mod_wsgi. -- Ticket URL: <https://trac.macports.org/ticket/44762> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #43787: New port: andatool
by MacPorts 02 Sep '14

02 Sep '14

#43787: New port: andatool ----------------------------+-------------------------------- Reporter: mschamschula@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Keywords: | Port: andatool ----------------------------+-------------------------------- I've created a port of Vanheusden's andatool. Andatool displays in realtime how often regular expressions match. -- Ticket URL: <https://trac.macports.org/ticket/43787> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #39633: py-psychopy: update to 1.77.01
by MacPorts 02 Sep '14

02 Sep '14

#39633: py-psychopy: update to 1.77.01 --------------------+------------------------- Reporter: jmr@… | Owner: jameskyle@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: py-psychopy --------------------+------------------------- http://www.psychopy.org/changelog.html -- Ticket URL: <https://trac.macports.org/ticket/39633> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #43806: shogun unable to test for swig version?
by MacPorts 02 Sep '14

02 Sep '14

#43806: shogun unable to test for swig version? ---------------------------+-------------------------------- Reporter: andre.david@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.0 Keywords: | Port: shogun ---------------------------+-------------------------------- In mavericks I asked for `shogun +python7` and got: {{{ :info:configure Checking for SWIG ... 3.0.0 ... too old version 2.0.4 or later required :info:configure :info:configure Error: swig required for modular interfaces :info:configure :info:configure Check configure.log if you do not understand why it failed. :info:configure The last 20 lines of configure.log are shown below :info:configure :info:configure /opt/local/lib/libhdf5.8.dylib (compatibility version 9.0.0, current version 9.1.0) :info:configure /opt/local/lib/libjson.0.dylib (compatibility version 1.0.0, current version 1.1.0) :info:configure /opt/local/lib/libxml2.2.dylib (compatibility version 12.0.0, current version 12.1.0) :info:configure /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib (compatibility version 1.0.0, current version 1.0.0) :info:configure /opt/local/lib/libarpack.2.dylib (compatibility version 3.0.0, current version 3.0.0) :info:configure /opt/local/lib/libglpk.33.dylib (compatibility version 34.0.0, current version 34.0.0) :info:configure /opt/local/lib/liblzo2.2.dylib (compatibility version 3.0.0, current version 3.0.0) :info:configure /opt/local/lib/libsnappy.1.dylib (compatibility version 4.0.0, current version 4.0.0) :info:configure /opt/local/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.8) :info:configure /opt/local/lib/libbz2.1.0.dylib (compatibility version 1.0.0, current version 1.0.6) :info:configure /opt/local/lib/liblzma.5.dylib (compatibility version 6.0.0, current version 6.5.0) :info:configure /opt/local/lib/liblpsolve55.dylib (compatibility version 5.5.0, current version 5.5.0) :info:configure :info:configure Result is: yes :info:configure ########################################## :info:configure :info:configure ============ Checking for SWIG ============ :info:configure Result is: 3.0.0 ... too old version 2.0.4 or later required :info:configure ########################################## :info:configure :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/shogun-2.1.0/src" && ./configure --prefix=/opt/local --ldflags=-lgfortran --enable-hdf5 --enable-json --enable-xml --enable-readline --enable-largefile --disable- spinlocks --enable-lapack --enable-arpack --disable-mosek --disable- superlu --disable-nlopt --enable-eigen3 --disable-cplex --enable-lpsolve --enable-glpk --enable-lzo --enable-snappy --enable-gzip --enable-bzip2 --enable-lzma --enable-bigstates --enable-hmmcache --enable-svm-light --disable-logcache --enable-shortrealkernelcache --enable-logsum-array --disable-doxygen --enable-optimization --includes=/opt/local/include --libs=/opt/local/lib --destdir=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/destroot --prefix=/opt/local --interfaces=cmdline_static,python_modular --enable- cpudetection --python=/opt/local/bin/python2.7 --pydir=/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages --includes=/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 --enable-hmm-parallel :info:configure Exit code: 1 :error:configure org.macports.configure for port shogun returned: configure failure: command execution failed :debug:configure Error code: NONE :debug:configure Backtrace: configure failure: command execution failed while executing "$procedure $targetname" :info:configure Warning: targets not executed for shogun: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install }}} This is similar to what triggered #34990, but there the discussion ended up veering to a build problem, while here it is a configure problem. I looked into shogun's configure script and the function doing the check is: {{{ assert_version() { name=$1 mode=$2 is_ver=$3 wanted_ver=$4 is=(`echo $is_ver| sed 's/\./ /g'`) wanted=(`echo $wanted_ver | sed 's/\./ /g'`) if test -z "$is"; then die "$name did not return version information" fi i=0 while test $i -lt ${#is[*]} 2>/dev/null && test $i -lt ${#wanted[*]} 2>/dev/null ; do if test ${is[i]} -lt ${wanted[i]}; then if test "$mode" = yes; then die "$name is outdated: version $wanted_ver required got version $is_ver." fi if test "$mode" = auto; then echores "`echo $is_ver` ... too old version $wanted_ver or later required" return 1 fi return 1 fi if test ${is[i]} -lt ${wanted[i]}; then return 0 fi let i++ done return 0 } }}} So, is it just me or this function will croak if '''any''' of the version fields is smaller? I.e., in this case 3.0.0 will fail against 2.0.4 because 0 < 4... Bump to shogun devs? -- Ticket URL: <https://trac.macports.org/ticket/43806> MacPorts <http://www.macports.org/> Ports system for OS X

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[MacPorts] #34990: SHOGUN installation: Error: swig too old version 1.3.36 or later required
by MacPorts 02 Sep '14

02 Sep '14

#34990: SHOGUN installation: Error: swig too old version 1.3.36 or later required -------------------------------+-------------------------------------------- Reporter: noelia@… | Owner: macports-tickets@… Type: request | Status: new Priority: High | Milestone: Component: ports | Version: 2.1.1 Keywords: shogun | Port: shogun -------------------------------+-------------------------------------------- The version of shogun on macports (0.9.3) came out before swig version 2.x.x. The source of the error is that configure does not check for the first digit in the version. REQUEST: Update the shogun port to the current release -- Ticket URL: <https://trac.macports.org/ticket/34990> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #28873: shogun @0.9.3 build failure
by MacPorts 02 Sep '14

02 Sep '14

#28873: shogun @0.9.3 build failure --------------------------------------+------------------------------------- Reporter: tal.yarkoni@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.2 Keywords: | Port: shogun --------------------------------------+------------------------------------- I can't get shogun 0.9.3 to build; relevant (I think) part of log below; full log attached. I'm running 10.6.6 with MacPorts 1.9.2 and Xcode 3.2.6 on a new (early 2011) MacBook Pro. I've tried uninstalling, cleaning, and reinstalling the complete dependency tree and get the same error. Any suggestions would be much appreciated. {{{ :info:build /opt/local/bin/g++-mp-4.4 -fPIC -pipe -O2 -m64 -g -Wall -Wno- unused-parameter -Wformat -Wformat-security -Wimplicit -Wparentheses -Wshadow -Wno-deprecated -O9 -fexpensive-optimizations -frerun-cse-after- loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread- jumps -fforce-addr -fstrength-reduce -funroll-loops -march=native -mtune=native -pthread -DSWIG_TYPE_TABLE=shogun -DDARWIN -DHAVE_POWL -DHAVE_SQRTL -DHAVE_ATLAS -DHAVE_LAPACK -DHAVE_LAPACK -DHAVE_LAPACK -DUSE_GLPK -DUSE_GZIP -DUSE_BZIP2 -DHAVE_LARGEFILE -DUSE_SHORTREAL_KERNELCACHE -DUSE_HMMPARALLELSTRUCTURES -DUSE_HMMPARALLEL -DUSE_BIGSTATES -DUSE_HMMCACHE -DUSE_REFERENCE_COUNTING -DGPL -DSWIG_TYPE_TABLE=shogun -DDARWIN -DHAVE_POWL -DHAVE_SQRTL -DHAVE_ATLAS -DHAVE_LAPACK -DHAVE_LAPACK -DHAVE_LAPACK -DUSE_GLPK -DUSE_GZIP -DUSE_BZIP2 -DHAVE_LARGEFILE -DUSE_SHORTREAL_KERNELCACHE -DUSE_HMMPARALLELSTRUCTURES -DUSE_HMMPARALLEL -DUSE_BIGSTATES -DUSE_HMMCACHE -DUSE_REFERENCE_COUNTING -DGPL -c -I. -I.. -I. -I.. -I/opt/local/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -I/opt/local/include -I../libshogun -I.. -o classifier/KernelPerceptron.cpp.o classifier/KernelPerceptron.cpp :info:build /opt/local/bin/g++-mp-4.4 -fPIC -pipe -O2 -m64 -g -Wall -Wno- unused-parameter -Wformat -Wformat-security -Wimplicit -Wparentheses -Wshadow -Wno-deprecated -O9 -fexpensive-optimizations -frerun-cse-after- loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread- jumps -fforce-addr -fstrength-reduce -funroll-loops -march=native -mtune=native -pthread -DSWIG_TYPE_TABLE=shogun -DDARWIN -DHAVE_POWL -DHAVE_SQRTL -DHAVE_ATLAS -DHAVE_LAPACK -DHAVE_LAPACK -DHAVE_LAPACK -DUSE_GLPK -DUSE_GZIP -DUSE_BZIP2 -DHAVE_LARGEFILE -DUSE_SHORTREAL_KERNELCACHE -DUSE_HMMPARALLELSTRUCTURES -DUSE_HMMPARALLEL -DUSE_BIGSTATES -DUSE_HMMCACHE -DUSE_REFERENCE_COUNTING -DGPL -DSWIG_TYPE_TABLE=shogun -DDARWIN -DHAVE_POWL -DHAVE_SQRTL -DHAVE_ATLAS -DHAVE_LAPACK -DHAVE_LAPACK -DHAVE_LAPACK -DUSE_GLPK -DUSE_GZIP -DUSE_BZIP2 -DHAVE_LARGEFILE -DUSE_SHORTREAL_KERNELCACHE -DUSE_HMMPARALLELSTRUCTURES -DUSE_HMMPARALLEL -DUSE_BIGSTATES -DUSE_HMMCACHE -DUSE_REFERENCE_COUNTING -DGPL -c -I. -I.. -I. -I.. -I/opt/local/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -I/opt/local/include -I../libshogun -I.. -o classifier/KNN.cpp.o classifier/KNN.cpp :info:build {standard input}:93:no such instruction: `vmovsd (%rdx,%rbx,8), %xmm0' :info:build {standard input}:111:no such instruction: `vmovsd LC2(%rip), %xmm0' ... goes on like this for a while... ... :info:build {standard input}:4095:no such instruction: `vmovsd %xmm1, (%r8)' :info:build {standard input}:4104:no such instruction: `vmovsd %xmm0, (%r9)' :info:build make[1]: *** [classifier/KNN.cpp.o] Error 1 :info:build make: *** [all] Error 2 :info:build shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_shogun/work/shogun-0.9.3/src" && /usr/bin/make -j5 all " returned error 2 :error:build Target org.macports.build returned: shell command failed (see log for details) }}} -- Ticket URL: <https://trac.macports.org/ticket/28873> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #44641: [Port abandoned] Ports maintained by jameskyle
by MacPorts 02 Sep '14

02 Sep '14

#44641: [Port abandoned] Ports maintained by jameskyle -------------------------+------------------------------------------------- Reporter: mf2k@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: backuppc cextract gdchart newmat | newran nifticlib py-chm py-chm2pdf py-hcluster | py-ode py-psychopy py-pynifti py-pywavelets | py26-pymvpa py26-tvdb py26-tvnamer | py27-instapaperlib shogun uclatools xmedcon -------------------------+------------------------------------------------- Macports committer jameskyle has not been [http://trac.macports.org/search?q=jameskyle%40macports.org&noquickjump=1&ch… active in 2 years] and has [https://trac.macports.org/query?owner=jameskyle%40macports.org&status=assig… a number of open tickets] which he has not responded to. -- Ticket URL: <https://trac.macports.org/ticket/44641> MacPorts <http://www.macports.org/> Ports system for OS X

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