March 2015 - macports-tickets - lists.macosforge.org

[MacPorts] #46988: p5-xml-libxslt: update to version 1.94
by MacPorts 03 Mar '15

03 Mar '15

#46988: p5-xml-libxslt: update to version 1.94 ----------------------+---------------------------- Reporter: devans@… | Owner: ryan@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: p5-xml-libxslt ----------------------+---------------------------- The attached proposed patch updates p5-xml-libxslt to version 1.94 and adds an optional test dependency for more complete testing. Changes relative to current version 1.92 are as follows {{{ 1.94 2015-01-19 - Fix builds on older versions of libxslt. - Breakage caused by the MaxVars change. - https://rt.cpan.org/Ticket/Display.html?id=101605 - Thanks to Deyan Ginev for the report. 1.93 2015-01-17 - Add the ->max_vars function to set the MaxVars. - https://rt.cpan.org/Ticket/Display.html?id=101413 - Thanks to Thomas Krichel for the report/request. }}} If you approve, I will commit the changes. -- Ticket URL: <https://trac.macports.org/ticket/46988> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47018: selfupdate failed
by MacPorts 03 Mar '15

03 Mar '15

#47018: selfupdate failed -------------------------------+-------------------------------- Reporter: dmytro.semenets@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: -------------------------------+-------------------------------- port selfupdate failed wilt message: {{{ Mac-mini:~$ sudo port -v selfupdate Password: ---> Updating MacPorts base sources using rsync rsync: failed to connect to rsync.macports.org: Connection refused (61) rsync error: error in socket IO (code 10) at /SourceCache/rsync/rsync-42/rsync/clientserver.c(105) [receiver=2.6.9] Command failed: /usr/bin/rsync -rtzv --delete-after rsync://rsync.macports.org/release/tarballs/base.tar /opt/local/var/macports/sources/rsync.macports.org/release/tarballs Exit code: 10 Error: Error synchronizing MacPorts sources: command execution failed To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: /opt/local/bin/port: port selfupdate failed: Error synchronizing MacPorts sources: command execution failed }}} -- Ticket URL: <https://trac.macports.org/ticket/47018> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47008: matplotlib needs upgrading to 1.4.3 for best results with python 3
by MacPorts 03 Mar '15

03 Mar '15

#47008: matplotlib needs upgrading to 1.4.3 for best results with python 3 -----------------------+-------------------------------- Reporter: gnurser@… | Owner: macports-tickets@… Type: request | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: -----------------------+-------------------------------- https://github.com/ipython/ipython/issues/7351 -- Ticket URL: <https://trac.macports.org/ticket/47008> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #41955: enblend @4.1.2_1: build fails with texinfo 5
by MacPorts 03 Mar '15

03 Mar '15

#41955: enblend @4.1.2_1: build fails with texinfo 5 ---------------------------+----------------------- Reporter: ryandesign@… | Owner: hvdwolf@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Resolution: fixed | Keywords: Port: enblend | ---------------------------+----------------------- Changes (by ryandesign@…): * status: new => closed * resolution: => fixed Comment: r133490 (maintainer timeout) -- Ticket URL: <https://trac.macports.org/ticket/41955#comment:2> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #46883: samtools-1.2 version bump request
by MacPorts 03 Mar '15

03 Mar '15

#46883: samtools-1.2 version bump request -----------------------------+-------------------------------- Reporter: grischa.toedt@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: -----------------------------+-------------------------------- Hi, samtools version 1.2 is out. The sources are now on github. see: http://www.htslib.org/download/ The samtools suite contains three packages: Samtools, BCFtools and HTSlib "Samtools and BCFtools both use HTSlib internally, but these source packages contain their own copies of htslib so they can be built independently." It would be great to have portfiles for all 3. thanking you! -- Ticket URL: <https://trac.macports.org/ticket/46883> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #46105: Octave has unlisted dependency on TeX
by MacPorts 03 Mar '15

03 Mar '15

#46105: Octave has unlisted dependency on TeX -----------------------+-------------------------------- Reporter: karsten@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: octave -----------------------+-------------------------------- Since some time late last week, octave fails to build. It looks like it depends on TeX to be installed, but the dependency is not listed in the port: :info:destroot /opt/local/bin/texi2dvi --build-dir=t2d_cache --build- dir=octav e.t2d -o octave.dvi \ :info:destroot octave.texi :info:destroot You don't have a working TeX binary (tex) installed anywhere in :info:destroot your PATH, and texi2dvi cannot proceed without one. If you want to use :info:destroot this script, you'll need to install TeX (if you don't have it) or change :info:destroot your PATH or TEX environment variable (if you do). See the --hel p :info:destroot output for more details. :info:destroot :info:destroot For information about obtaining TeX, please see http://tug.org/te xlive, :info:destroot or do a web search for TeX and your operating system or distro. Attaching full build log. -- Ticket URL: <https://trac.macports.org/ticket/46105> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47004: py34-ipython 3.0.0 requires py34-jsonschema
by MacPorts 03 Mar '15

03 Mar '15

#47004: py34-ipython 3.0.0 requires py34-jsonschema ---------------------------------+-------------------------------- Reporter: manuel.deljesuspe@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: ipython | Port: py34-ipython 3.0.0 ---------------------------------+-------------------------------- The new version of ipython 3.0.0 requires jsonschema to launch (not to compile). It can be directly installed from macports so the problem is easy to fix anyways. Just posting this ticket to make the maintainer aware of the problem. -- Ticket URL: <https://trac.macports.org/ticket/47004> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47002: ola @0.9.5 new upstream release
by MacPorts 03 Mar '15

03 Mar '15

#47002: ola @0.9.5 new upstream release ----------------------+-------------------------------- Reporter: bugs@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: haspatch | Port: ola ----------------------+-------------------------------- Update to reflect the latest upstream release. -- Ticket URL: <https://trac.macports.org/ticket/47002> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47010: port update outdated failed !
by MacPorts 02 Mar '15

02 Mar '15

#47010: port update outdated failed ! ------------------------------+-------------------------------- Reporter: krislec@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: YOSEMITE 10.10.3 | Port: ------------------------------+-------------------------------- {{{ sudo -s }}} ... {{{ port -f selfupdate }}} ... {{{ port update outdated }}} {{{ ---> Computing dependencies for MacPorts_Framework ---> Building MacPorts_Framework Error: org.macports.build for port MacPorts_Framework returned: command execution failed Please see the log file for port MacPorts_Framework for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/main.log Error: Unable to upgrade port: 1 To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets }}} ... {{{ cat /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/main.log }}} {{{ version:1 :msg:main ---> Computing dependencies for MacPorts_Framework:info:main .:debug:main Searching for dependency: subversion :debug:main Found Dependency: receipt exists for subversion :msg:main :debug:main Executing org.macports.main (MacPorts_Framework) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 501 :debug:main euid changed to: 502 :debug:main Skipping completed org.macports.fetch (MacPorts_Framework) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (MacPorts_Framework) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (MacPorts_Framework) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (MacPorts_Framework) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.configure (MacPorts_Framework) :debug:main Privilege de-escalation not attempted as not running as root. :debug:build build phase started at Mon Mar 2 23:26:51 CET 2015 :notice:build ---> Building MacPorts_Framework :debug:build Executing org.macports.build (MacPorts_Framework) :debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework" && /usr/bin/xcodebuild -target "MacPorts" -configuration Release build OBJROOT=build/ SYMROOT=build/ MACOSX_DEPLOYMENT_TARGET=10.10 ARCHS=x86_64 SDKROOT="" GCC_VERSION=com.apple.compilers.llvm.clang.1_0 CLANG_CXX_LIBRARY="libc++" ' :info:build Build settings from command line: :info:build ARCHS = x86_64 :info:build CLANG_CXX_LIBRARY = libc++ :info:build GCC_VERSION = com.apple.compilers.llvm.clang.1_0 :info:build MACOSX_DEPLOYMENT_TARGET = 10.10 :info:build OBJROOT = build/ :info:build SDKROOT = :info:build SYMROOT = build/ :info:build :info:build === BUILD TARGET MPHelperTool OF PROJECT MacPorts.Framework WITH CONFIGURATION Release === :info:build :info:build Check dependencies :info:build :info:build CompileC build/MacPorts.Framework.build/Release/MPHelperTool.build/Objects- normal/x86_64/MPHelperTool.o MPHelperTool.m normal x86_64 objective-c com.apple.compilers.llvm.clang.1_0.compiler :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework :info:build export LANG=en_US.US-ASCII :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -x objective-c -arch x86_64 -fmessage-length=0 -fdiagnostics-show-note- include-stack -fmacro-backtrace-limit=0 -fobjc-gc -Wno-trigraphs -fpascal- strings -Os -Wno-missing-field-initializers -Wno-missing-prototypes -Wno- implicit-atomic-properties -Wno-receiver-is-weak -Wno-arc-repeated-use-of- weak -Wno-missing-braces -Wparentheses -Wswitch -Wno-unused-function -Wno- unused-label -Wno-unused-parameter -Wunused-variable -Wunused-value -Wno- empty-body -Wno-uninitialized -Wno-unknown-pragmas -Wno-shadow -Wno-four- char-constants -Wno-conversion -Wno-constant-conversion -Wno-int- conversion -Wno-bool-conversion -Wno-enum-conversion -Wno-shorten-64-to-32 -Wpointer-sign -Wno-newline-eof -Wno-selector -Wno-strict-selector-match -Wno-undeclared-selector -Wno-deprecated-implementations -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk -fasm-blocks -fstrict-aliasing -Wprotocol -Wdeprecated-declarations -mmacosx-version-min=10.10 -g -fvisibility=hidden -Wno-sign-conversion -iquote /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/MacPorts.Framework.build/Release/MPHelperTool.build /MPHelperTool-generated-files.hmap -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/MacPorts.Framework.build/Release/MPHelperTool.build /MPHelperTool-own-target-headers.hmap -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/MacPorts.Framework.build/Release/MPHelperTool.build /MPHelperTool-all-target-headers.hmap -iquote /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/MacPorts.Framework.build/Release/MPHelperTool.build /MPHelperTool-project-headers.hmap -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/Release/include -I/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/MacPorts.Framework.build/Release/MPHelperTool.build/DerivedSources/x86_64 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/MacPorts.Framework.build/Release/MPHelperTool.build/DerivedSources -F/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/Release -MMD -MT dependencies -MF /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/MacPorts.Framework.build/Release/MPHelperTool.build /Objects-normal/x86_64/MPHelperTool.d --serialize-diagnostics /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/MacPorts.Framework.build/Release/MPHelperTool.build /Objects-normal/x86_64/MPHelperTool.dia -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/MPHelperTool.m -o /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework/build/MacPorts.Framework.build/Release/MPHelperTool.build /Objects-normal/x86_64/MPHelperTool.o :info:build error: garbage collection is no longer supported :info:build :info:build ** BUILD FAILED ** :info:build :info:build :info:build The following build commands failed: :info:build CompileC build/MacPorts.Framework.build/Release/MPHelperTool.build/Objects- normal/x86_64/MPHelperTool.o MPHelperTool.m normal x86_64 objective-c com.apple.compilers.llvm.clang.1_0.compiler :info:build (1 failure) :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/work/MacPorts_Framework" && /usr/bin/xcodebuild -target "MacPorts" -configuration Release build OBJROOT=build/ SYMROOT=build/ MACOSX_DEPLOYMENT_TARGET=10.10 ARCHS=x86_64 SDKROOT="" GCC_VERSION=com.apple.compilers.llvm.clang.1_0 CLANG_CXX_LIBRARY="libc++" :info:build Exit code: 65 :error:build org.macports.build for port MacPorts_Framework returned: command execution failed :debug:build Error code: NONE :debug:build Backtrace: command execution failed while executing "proc-org.macports.build-build-0 org.macports.build" ("eval" body line 1) invoked from within "eval $procedure $targetname" :info:build Warning: targets not executed for MacPorts_Framework: org.macports.destroot org.macports.build :notice:build Please see the log file for port MacPorts_Framework for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_MacPorts_Framework/MacPorts_Framework/main.log }}} Please Help me... (XCODE update and licence agreed) -- Ticket URL: <https://trac.macports.org/ticket/47010> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #46797: Update Port whizard (science)
by MacPorts 02 Mar '15

02 Mar '15

#46797: Update Port whizard (science) ---------------------------------+-------------------------------- Reporter: juergen.reuter@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: Port version update | Port: whizard ---------------------------------+-------------------------------- Update Port whizard (science) from its version 2.2.3 to 2.2.4. Adding gcc5 as possible build compiler, switching default compiler from 4.8 to 4.9. -- Ticket URL: <https://trac.macports.org/ticket/46797> MacPorts <https://www.macports.org/> Ports system for OS X

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