March 2015 - macports-tickets - lists.macosforge.org

[MacPorts] #47231: resolve minor nits with par
by MacPorts 12 Sep '15

12 Sep '15

#47231: resolve minor nits with par -------------------------+-------------------------------- Reporter: lists@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: haspatch | Port: par -------------------------+-------------------------------- -- Ticket URL: <https://trac.macports.org/ticket/47231> MacPorts <https://www.macports.org/> Ports system for OS X

1 12

[MacPorts] #45911: py27-h5py @2.3.1_1 built against parallel HDF5 can't find mpi.h
by MacPorts 10 Sep '15

10 Sep '15

#45911: py27-h5py @2.3.1_1 built against parallel HDF5 can't find mpi.h -----------------------+-------------------------------- Reporter: willic3@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.2 Keywords: | Port: -----------------------+-------------------------------- Hi, I am attempting to build py27-h5py on Yosemite. I have the following hdf5 installed: hdf5 @1.8.13_0+cxx+gcc48+openmpi+szip. The difficulty is that openmpi puts headers in the subdirectory /opt/local/include/openmpi-gcc48, so when I try to build py27-h5py I get: In file included from h5py/defs.c:241: In file included from h5py/api_compat.h:27: In file included from /opt/local/include/hdf5.h:24: /opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file not found # include <mpi.h> ^ 1 warning and 1 error generated. I would think the problem could be avoided by either defining CPPFLAGS appropriately or by using mpicc for compilation. My system info: OS X 10.10 Xcode 6.1 clang: Apple LLVM version 6.0 (clang-600.0.54) (based on LLVM 3.5svn) Installed openmpi: openmpi-default @1.7.5_3+gcc48 (active) openmpi-gcc48 @1.7.5_3+fortran (active) Please let me know if you need any more info. Thanks, Charles -- Ticket URL: <https://trac.macports.org/ticket/45911> MacPorts <https://www.macports.org/> Ports system for OS X

1 10

[MacPorts] #46787: SWIG version error dolfin
by MacPorts 09 Sep '15

09 Sep '15

#46787: SWIG version error dolfin -----------------------+-------------------------------- Reporter: mwathen@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: -----------------------+-------------------------------- Hi, I get a swig version error when I try and create a function space in FEniCS. Here is the error: Calling FFC just-in-time (JIT) compiler, this may take some time. Incompatible swig versions detected. UFC swig version is not the same as extension module swig version: '3.0.2' != '3.0.5' --------------------------------------------------------------------------- Exception Traceback (most recent call last) /Users/michaelwathen/Dropbox/mastersresearch/mhd/FEniCS/MHD/Stabilised/SaddlePointForm/Test/GeneralisedEigen/NoBC/MHDfluid.py in <module>() 91 order = 1 92 parameters['reorder_dofs_serial'] = False ---> 93 Velocity = VectorFunctionSpace(mesh, "CG", order) 94 Pressure = FunctionSpace(mesh, "DG", order-1) 95 Magnetic = FunctionSpace(mesh, "N1curl", order) /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/dolfin/functions/functionspace.py in __init__(self, mesh, family, degree, dim, form_degree, constrained_domain, restriction) 626 # Initialize base class 627 FunctionSpaceBase.__init__(self, mesh, element, --> 628 constrained_domain=constrained_domain) 629 630 class TensorFunctionSpace(FunctionSpaceBase): /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/dolfin/functions/functionspace.py in __init__(self, mesh, element, constrained_domain) 151 152 # JIT-compile element to get ufc_element and ufc_dofmap --> 153 ufc_element, ufc_dofmap = jit(self._ufl_element, mpi_comm=mesh.mpi_comm()) 154 155 # Instantiate DOLFIN FiniteElement and DofMap /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/dolfin/compilemodules/jit.py in mpi_jit(*args, **kwargs) 62 # Just call JIT compiler when running in serial 63 if MPI.size(mpi_comm) == 1: ---> 64 return local_jit(*args, **kwargs) 65 66 # Compile first on process 0 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/dolfin/compilemodules/jit.py in jit(form, form_compiler_parameters, mpi_comm) 126 127 # Execute! --> 128 return form_compiler.jit(form, parameters=p) /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/ffc/jitcompiler.py in jit(ufl_object, parameters) 70 # Check if we get an element or a form 71 if isinstance(ufl_object, FiniteElementBase): ---> 72 return jit_element(ufl_object, parameters) 73 else: 74 return jit_form(ufl_object, parameters) /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/ffc/jitcompiler.py in jit_element(element, parameters) 175 176 # Compile form --> 177 compiled_form, module, prefix = jit_form(form, parameters) 178 179 form_data = compute_form_data(form) /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/ffc/jitcompiler.py in jit_form(form, parameters) 156 157 # Extract compiled form --> 158 check_swig_version(module) 159 compiled_form = _extract_form(module, module_name) 160 return compiled_form, module, module_name /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/ffc/jitcompiler.py in check_swig_version(compiled_module) 81 "version is not the same as extension module swig "\ 82 "version: '%s' != '%s' " % \ ---> 83 (ufc.__swigversion__, compiled_module.swigversion)) 84 85 def jit_form(form, parameters=None): /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/ffc/log.pyc in <lambda>(*message) /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/ufl/log.pyc in error(self, *message) 149 "Write error message and raise an exception." 150 self._log.error(*message) --> 151 raise self._exception_type(self._format_raw(*message)) 152 153 def begin(self, *message): Exception: Incompatible swig versions detected. UFC swig version is not the same as extension module swig version: '3.0.2' != '3.0.5' -- Ticket URL: <https://trac.macports.org/ticket/46787> MacPorts <https://www.macports.org/> Ports system for OS X

1 6

[MacPorts] #47015: Usage of perl variant for a perl application
by MacPorts 09 Sep '15

09 Sep '15

#47015: Usage of perl variant for a perl application ------------------------------+---------------------------------- Reporter: Joel.Brogniart@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: perl | Port: auto-multiple-choice ------------------------------+---------------------------------- Hi, Using informations from <http://trac.macports.org/ticket/46570> I tried to modify port x11/auto-multiple-choice to use perl variants. I added the lines: PortGroup perl5 1.0 ... perl5.require_variant yes perl5.conflict_variants yes perl5.branches 5.16 5.18 5.20 perl5.create_variants ${perl5.branches} and changed all "port:p5.16" to "port:p${perl5.major}" All my tests where done after having "sudo port uninstall installed" before . If I do sudo port install auto-multiple-choice auto-multiple-choice All works fine, the application is built, installed and works. If I do sudo port install perl5 sudo port install auto-multiple-choice auto-multiple-choice All works fine too, the application is built, installed and works. But if I do sudo port install perl5 +perl5_20 sudo port install auto-multiple-choice auto-multiple-choice The application is built, installed but when launched I get the error: Can't locate AMC/Basic.pm in @INC (you may need to install the AMC::Basic module) (@INC contains: /opt/local/lib/perl5/site_perl/5.20/darwin-thread- multi-2level /opt/local/lib/perl5/site_perl/5.20 /opt/local/lib/perl5/vendor_perl/5.20/darwin-thread-multi-2level /opt/local/lib/perl5/vendor_perl/5.20 /opt/local/lib/perl5/5.20/darwin- thread-multi-2level /opt/local/lib/perl5/5.20 .) at /opt/local/lib/AMC/perl/AMC-gui.pl line 45. BEGIN failed--compilation aborted at /opt/local/lib/AMC/perl/AMC-gui.pl line 45. I get the same error when I install perl5_18. All auto-multiple-choice files stays at the same places, whatever perl variant is installed. The unreachable file is in "/opt/local/lib/perl5/vendor_perl/AMC/Basic.pm". With the default perl5 install (perl5_16), it seems that @INC contains the path "/opt/local/lib/perl5/vendor_perl' but not with perl5_18 and perl5_20. Are there other informations I should have added for the application to work with perl5_18 or perl5_20 variants? -- Ticket URL: <https://trac.macports.org/ticket/47015> MacPorts <https://www.macports.org/> Ports system for OS X

1 9

[MacPorts] #46326: Upgrade rabbitmq-server to last version
by MacPorts 04 Sep '15

04 Sep '15

#46326: Upgrade rabbitmq-server to last version --------------------------------+-------------------------------- Reporter: bertrand.zuchuat@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: rabbitmq-server | Port: --------------------------------+-------------------------------- It's possible to upgrade to the last version (3.4.2) of rabbitmq-server ? Thanks -- Ticket URL: <https://trac.macports.org/ticket/46326> MacPorts <https://www.macports.org/> Ports system for OS X

1 5

[MacPorts] #47138: py-ipy update to 0.82a, add Python 3.4 support
by MacPorts 26 Aug '15

26 Aug '15

#47138: py-ipy update to 0.82a, add Python 3.4 support ----------------------+-------------------------------- Reporter: eirnym@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: py-ipy ----------------------+-------------------------------- Update py-ipy to 0.82a and which adds Python 3.4 support -- Ticket URL: <https://trac.macports.org/ticket/47138> MacPorts <https://www.macports.org/> Ports system for OS X

1 8

[MacPorts] #46423: p5-lj-simple: tests fail
by MacPorts 26 Aug '15

26 Aug '15

#46423: p5-lj-simple: tests fail ---------------------+-------------------------- Reporter: mojca@… | Owner: kayos@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-lj-simple ---------------------+-------------------------- {{{ ---> Testing p5.16-lj-simple PERL_DL_NONLAZY=1 /opt/local/bin/perl5.16 "-Iblib/lib" "-Iblib/arch" test.pl 1..42 # Running under perl version 5.016003 for darwin # Current time local: Mon Jan 5 21:49:16 2015 # Current time GMT: Mon Jan 5 20:49:16 2015 # Using Test.pm version 1.25_02 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 not ok 17 # Test 17 got: "Failed to shutdown socket - Socket is not connected" (test.pl at line 94) # Expected: "/HTTP request failed/" # test.pl line 94 is: ok($LJ::Simple::error,'/HTTP request failed/'); not ok 18 # Test 18 got: "Failed to shutdown socket - Socket is not connected" (test.pl at line 106) # Expected: "/LJ request failed: Invalid username/" # test.pl line 106 is: ok($LJ::Simple::error,'/LJ request failed: Invalid username/'); not ok 19 # Test 19 got: "Failed to shutdown socket - Socket is not connected" (test.pl at line 118) # Expected: "/LJ request failed: Invalid password/" # test.pl line 118 is: ok($LJ::Simple::error,'/LJ request failed: Invalid password/'); ok 20 ok 21 ok 22 not ok 23 # Failed test 23 in test.pl at line 208 # test.pl line 208 is: if (defined $lj) {ok(1)} else {ok(0)} not ok 24 # Failed test 24 in test.pl at line 213 # test.pl line 213 is: ok(0); not ok 25 # Failed test 25 in test.pl at line 218 # test.pl line 218 is: ok(0); not ok 26 # Failed test 26 in test.pl at line 223 # test.pl line 223 is: ok(0); ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 not ok 37 # Failed test 37 in test.pl at line 282 # test.pl line 282 is: ok(0); Error was: Failed to shutdown socket - Socket is not connected not ok 38 # Failed test 38 in test.pl at line 292 # test.pl line 292 is: ok(0); ok 39 not ok 40 # Failed test 40 in test.pl at line 305 # test.pl line 305 is: ok(0); not ok 41 # Failed test 41 in test.pl at line 309 # test.pl line 309 is: if ((defined $lj)&&(!defined $lj->groups(\%Groups))) { not ok 42 # Failed test 42 in test.pl at line 326 # test.pl line 326 is: ok(0); }}} -- Ticket URL: <https://trac.macports.org/ticket/46423> MacPorts <https://www.macports.org/> Ports system for OS X

1 1

[MacPorts] #45799: Can't build encfs-1.7.5-135_2 on OSX 10.6.8
by MacPorts 26 Aug '15

26 Aug '15

#45799: Can't build encfs-1.7.5-135_2 on OSX 10.6.8 ---------------------+-------------------------------- Reporter: dnied@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.2 Keywords: | Port: ---------------------+-------------------------------- Full build log available on request, only the (presumably) relevant part reported here. * port command's output: {{{ ---> Computing dependencies for encfs ---> Fetching archive for encfs [...] ---> Extracting encfs ---> Applying patches to encfs ---> Configuring encfs ---> Building encfs Error: org.macports.build for port encfs returned: command execution failed Please see the log file for port encfs for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_fuse_encfs/encfs/main.log Error: Unable to upgrade port: 1 Error rebuilding encfs while executing "error "Error rebuilding $portname"" (procedure "revupgrade_scanandrebuild" line 395) invoked from within "revupgrade_scanandrebuild broken_port_counts $opts" (procedure "macports::revupgrade" line 5) invoked from within "macports::revupgrade $opts" (procedure "action_revupgrade" line 2) invoked from within "action_revupgrade $action $portlist $opts" (procedure "action_upgrade" line 25) invoked from within "$action_proc $action $portlist [array get global_options]" (procedure "process_cmd" line 103) invoked from within "process_cmd $remaining_args" invoked from within "if { [llength $remaining_args] > 0 } { # If there are remaining arguments, process those as a command set exit_status [process_cmd $remaining..." (file "/opt/local/bin/port" line 5268) Exit 1 }}} * relevant part of encfs' build log: {{{ :info:build /usr/bin/g++-4.2 -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -D_FILE_OFFSET_BITS=64 -DFUSE_USE_VERSION=26 -D__STDC_FORMAT_MACROS -DRLOG_COMPONENT="encfs" -I/opt/local/include -I/opt/local/include -I/opt/local/include -I../intl -DLOCALEDIR=\"/opt/local/share/locale\" -W -Wall -Wpointer-arith -Wwrite- strings -pipe -Os -arch x86_64 -D_THREAD_SAFE -pthread -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cpp :info:build main.cpp: In function ‘int main(int, char**)’: :info:build main.cpp:573: error: invalid conversion from ‘int (*)(const char*, const char*, const char*, size_t, int, uint32_t)’ to ‘int (*)(const char*, const char*, const char*, size_t, int)’ :info:build main.cpp:574: error: invalid conversion from ‘int (*)(const char*, const char*, char*, size_t, uint32_t)’ to ‘int (*)(const char*, const char*, char*, size_t)’ :info:build make[2]: *** [main.o] Error 1 :info:build make[2]: *** Waiting for unfinished jobs.... :info:build mv -f .deps/FileUtils.Tpo .deps/FileUtils.Plo :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_fuse_encfs/encfs/work/1.x/encfs' :info:build make[1]: *** [all-recursive] Error 1 :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_fuse_encfs/encfs/work/1.x' :info:build make: *** [all] Error 2 :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_fuse_encfs/encfs/work/1.x' :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_fuse_encfs/encfs/work/1.x" && /usr/bin/make -j2 -w all :info:build Exit code: 2 :error:build org.macports.build for port encfs returned: command execution failed :debug:build Error code: CHILDSTATUS 97682 2 :debug:build Backtrace: command execution failed while executing "system -nice 0 $fullcmdstring" ("eval" body line 1) invoked from within "eval system $notty $nice \$fullcmdstring" invoked from within "command_exec build" (procedure "portbuild::build_main" line 8) invoked from within "portbuild::build_main org.macports.build" ("eval" body line 1) invoked from within "eval $procedure $targetname" :info:build Warning: targets not executed for encfs: org.macports.install org.macports.build org.macports.destroot :notice:build Please see the log file for port encfs for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_fuse_encfs/encfs/main.log }}} * darwin release: {{{ ~# uname -a Darwin localhost.local 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 }}} -- Ticket URL: <https://trac.macports.org/ticket/45799> MacPorts <https://www.macports.org/> Ports system for OS X

1 4

[MacPorts] #45852: physfs #2.0.3 can't build on Leopard/PPC due to rpath (patch included)
by MacPorts 26 Aug '15

26 Aug '15

#45852: physfs #2.0.3 can't build on Leopard/PPC due to rpath (patch included) -------------------------+-------------------------------- Reporter: khepler@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.2 Keywords: | Port: physfs -------------------------+-------------------------------- physfs targets 10.2 on PowerPCs, but on Leopard cmake adds -Wl,-rpath to the GCC args which requires 10.5 or newer: {{{ /opt/local/bin/cmake -E cmake_link_script CMakeFiles/physfs.dir/link.txt --verbose=1 /usr/bin/gcc-4.2 -pipe -Os -arch ppc -DNDEBUG -arch ppc -mmacosx- version-min=10.5 -dynamiclib -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -arch ppc -compatibility_version 1.0.0 -current_version 2.0.3 -o libphysfs.2.0.3.dylib -install_name /opt/local/lib/libphysfs.1.dylib CMakeFiles/physfs.dir/physfs.o CMakeFiles/physfs.dir/physfs_byteorder.o CMakeFiles/physfs.dir/physfs_unicode.o CMakeFiles/physfs.dir/platform/os2.o CMakeFiles/physfs.dir/platform/pocketpc.o CMakeFiles/physfs.dir/platform/posix.o CMakeFiles/physfs.dir/platform/unix.o CMakeFiles/physfs.dir/platform/macosx.o CMakeFiles/physfs.dir/platform/windows.o CMakeFiles/physfs.dir/archivers/dir.o CMakeFiles/physfs.dir/archivers/grp.o CMakeFiles/physfs.dir/archivers/hog.o CMakeFiles/physfs.dir/archivers/lzma.o CMakeFiles/physfs.dir/archivers/mvl.o CMakeFiles/physfs.dir/archivers/qpak.o CMakeFiles/physfs.dir/archivers/wad.o CMakeFiles/physfs.dir/archivers/zip.o CMakeFiles/physfs.dir/lzma/C/7zCrc.o CMakeFiles/physfs.dir/lzma/C/Archive/7z/7zBuffer.o CMakeFiles/physfs.dir/lzma/C/Archive/7z/7zDecode.o CMakeFiles/physfs.dir/lzma/C/Archive/7z/7zExtract.o CMakeFiles/physfs.dir/lzma/C/Archive/7z/7zHeader.o CMakeFiles/physfs.dir/lzma/C/Archive/7z/7zIn.o CMakeFiles/physfs.dir/lzma/C/Archive/7z/7zItem.o CMakeFiles/physfs.dir/lzma/C/Archive/7z/7zMethodID.o CMakeFiles/physfs.dir/lzma/C/Compress/Branch/BranchX86.o CMakeFiles/physfs.dir/lzma/C/Compress/Branch/BranchX86_2.o CMakeFiles/physfs.dir/lzma/C/Compress/Lzma/LzmaDecode.o /opt/local/lib/libz.dylib -mmacosx-version-min=10.2 -framework Carbon -framework IOKit -Wl,-rpath,/opt/local/lib [ 49%] Built target physfs-static ld: -rpath can only be used when targeting Mac OS X 10.5 or later collect2: ld returned 1 exit status }}} Included patches set minimum build target to 10.5 on Leopard/PPC. -- Ticket URL: <https://trac.macports.org/ticket/45852> MacPorts <https://www.macports.org/> Ports system for OS X

1 5

[MacPorts] #46974: digikam 4.8.0
by MacPorts 25 Aug '15

25 Aug '15

#46974: digikam 4.8.0 -------------------------+-------------------------------- Reporter: rjvbertin@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: haspatch | Port: digikam -------------------------+-------------------------------- This is an update to digikam 4.8.0, an uneventful upgrade from 4.6.0 which I've been running for a while now. The patch is against the portfile for Digikam 4.0.0 . -- Ticket URL: <https://trac.macports.org/ticket/46974> MacPorts <https://www.macports.org/> Ports system for OS X

1 2