March 2015 - macports-tickets - lists.macosforge.org

Re: [MacPorts] #23313: netatalk: Fix for "PAM_Error: Authentication failure"
by MacPorts 09 Mar '15

09 Mar '15

#23313: netatalk: Fix for "PAM_Error: Authentication failure" ------------------------+---------------------- Reporter: probono@… | Owner: Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Resolution: | Keywords: haspatch Port: netatalk | ------------------------+---------------------- Changes (by raimue@…): * owner: ralph@… => -- Ticket URL: <https://trac.macports.org/ticket/23313#comment:3> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47056: nco/ncks and netcdf
by MacPorts 09 Mar '15

09 Mar '15

#47056: nco/ncks and netcdf -------------------------------+-------------------------------- Reporter: barry.j.mcinnes@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: nco netcdf | Port: nco netcdf -------------------------------+-------------------------------- The current nco and netcdf on macports, currently take more than 2 hours (killed), whereas the versions on linux for the same files and command take 13 seconds. A similar nccopy command takes 13 seconds on the same mac for the same files. The linux setup is /usr/local/bin/ncks -r NCO netCDF Operators version "4.4.5" last modified 2014/07/15 built Aug 29 2014 on linux64.psd.esrl.noaa.gov by root ncks version 4.4.5 Linked to netCDF library version 4.3.3, compiled Feb 24 2015 07:21:57 Copyright (C) 1995--2014 Charlie Zender This program is part of NCO, the netCDF Operators. NCO is free software and comes with a BIG FAT KISS and ABOLUTELY NO WARRANTY You can redistribute and/or modify NCO under the terms of the GNU General Public License (GPL) Version 3 with exceptions described in the LICENSE file GPL: http://www.gnu.org/copyleft/gpl.html LICENSE: http://nco.cvs.sf.net/nco/nco/LICENSE Homepage: http://nco.sf.net User Guide: http://nco.sf.net/nco.html Configuration Option: Active? Meaning or Reference: Check _FillValue Yes http://nco.sf.net/nco.html#mss_val Check missing_value No http://nco.sf.net/nco.html#mss_val DAP clients Yes http://nco.sf.net/nco.html#dap Debugging: Custom No Pedantic, bounds checking (slowest execution) Debugging: Symbols No Produce symbols for debuggers (e.g., dbx, gdb) GNU Scientific Library Yes http://nco.sf.net/nco.html#gsl HDF4 support Unknown http://nco.sf.net/nco.html#hdf4 Internationalization No http://nco.sf.net/nco.html#i18n (pre- alpha) MPI parallelization No http://nco.sf.net/nco.html#mpi (beta) netCDF3 64-bit files Yes http://nco.sf.net/nco.html#lfs netCDF4/HDF5 available Yes http://nco.sf.net/nco.html#nco4 netCDF4/HDF5 enabled Yes http://nco.sf.net/nco.html#nco4 OpenMP SMP threading No http://nco.sf.net/nco.html#omp Optimization: run-time No Fastest execution possible (slowest compilation) Parallel netCDF3 No http://nco.sf.net/nco.html#pnetcdf (pre- alpha) Regular Expressions Yes http://nco.sf.net/nco.html#rx Shared libraries built No Small, dynamically linked executables Static libraries built Yes Large executables with private namespaces UDUnits conversions Yes http://nco.sf.net/nco.html#udunits UDUnits2 conversions Yes http://nco.sf.net/nco.html#udunits The macports is ncks -r NCO netCDF Operators version "4.4.7" last modified 2014/11/05 built Jan 6 2015 on mac73.psd.esrl.noaa.gov by root ncks version 4.4.7 Linked to netCDF library version 4.3.2, compiled Feb 3 2015 08:18:38 Copyright (C) 1995--2014 Charlie Zender This program is part of NCO, the netCDF Operators. NCO is free software and comes with a BIG FAT KISS and ABOLUTELY NO WARRANTY You can redistribute and/or modify NCO under the terms of the GNU General Public License (GPL) Version 3 with exceptions described in the LICENSE file GPL: http://www.gnu.org/copyleft/gpl.html LICENSE: http://nco.cvs.sf.net/nco/nco/LICENSE Homepage: http://nco.sf.net User Guide: http://nco.sf.net/nco.html Configuration Option: Active? Meaning or Reference: Check _FillValue Yes http://nco.sf.net/nco.html#mss_val Check missing_value No http://nco.sf.net/nco.html#mss_val DAP clients Yes http://nco.sf.net/nco.html#dap Debugging: Custom No Pedantic, bounds checking (slowest execution) Debugging: Symbols No Produce symbols for debuggers (e.g., dbx, gdb) GNU Scientific Library Yes http://nco.sf.net/nco.html#gsl HDF4 support Unknown http://nco.sf.net/nco.html#hdf4 Internationalization No http://nco.sf.net/nco.html#i18n (pre- alpha) MPI parallelization No http://nco.sf.net/nco.html#mpi (beta) netCDF3 64-bit files Yes http://nco.sf.net/nco.html#lfs netCDF4/HDF5 available Yes http://nco.sf.net/nco.html#nco4 netCDF4/HDF5 enabled Yes http://nco.sf.net/nco.html#nco4 OpenMP SMP threading No http://nco.sf.net/nco.html#omp Optimization: run-time No Fastest execution possible (slowest compilation) Parallel netCDF3 No http://nco.sf.net/nco.html#pnetcdf (pre- alpha) Regular Expressions Yes http://nco.sf.net/nco.html#rx Shared libraries built No Small, dynamically linked executables Static libraries built Yes Large executables with private namespaces UDUnits conversions Yes http://nco.sf.net/nco.html#udunits UDUnits2 conversions Yes http://nco.sf.net/nco.html#udunits The command is ncks -D 3 --fl_fmt=netcdf4_classic -L 5 --overwrite huss_Amon_ACCESS1-0_historical_r1i1p1_185001-200512.nc /Projects/CMIP5A//Monthly/historical/ACCESS1-0//r1i1p1//huss_Amon_ACCESS1-0_historical_r1i1p1_185001-200512.nc The file size is 200MB. Maybe an update to netcdf 4.3.3 will speed things up ? Maybe its the chunking size the macports cannot handle ? One thing I note is that the chunck size for the ncks for the huss variable on Mac ends up being: 1872, 145, 192 but using nccopy, it's 1, 145, 192 which is more in line with what I would expect. -- Ticket URL: <https://trac.macports.org/ticket/47056> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47084: RageDNA Tips For Body Building
by MacPorts 09 Mar '15

09 Mar '15

#47084: RageDNA Tips For Body Building ----------------------------+-------------------------------- Reporter: cnagswkglltw@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: ----------------------------+-------------------------------- Give a broad step forward and bend your knees to complete the lunge. While low, up the dumbbell toward the sky straight and performing a shoulder press in the making. Try it worked shoulder [http://www.supplementsdeal.com/shocking-result-about-ragedna/ RageDNA] is the opposite of the leg that shakes forward. Why it is good ?: This exercise is very good as put into action much of the muscle groups of the body. Jump and combine a change of air posture, reacting to this stimulus and landing with the best possible balance. Estate sure that your body is stable before you leap. How do I do ?: begins performing half-lunge. At the moment we're down, we take momentum to jump up and switch legs. Try to take the fall for a good shock absorption and bounce as new leap. Kettlebell swing Why it is good ?: although many people say that kettlebells are weights for fitness, of course I say this is [http://www.supplementsdeal.com/shocking-result-about-ragedna/ RageDNA] a wrong statement. The kettlebells were designed to cardiovascular work. In the swing we can work shoulders, glutes, quadriceps, hamstrings and abs. This results in a mass burning calories. $Amazing 2015$ Muscle Building Product Try Now | http://www.supplementsdeal.com/shocking-result-about-ragedna/ -- Ticket URL: <https://trac.macports.org/ticket/47084> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #45931: cdf stealth update
by MacPorts 09 Mar '15

09 Mar '15

#45931: cdf stealth update ----------------------------+-------------------------------- Reporter: mschamschula@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.2 Keywords: haspatch | Port: cdf ----------------------------+-------------------------------- The checksums for cdf 3.5.0.2 have failed. I have verified that the current source file is correct via the md5 checksum on the download site. Updated checksums are attached in patch. -- Ticket URL: <https://trac.macports.org/ticket/45931> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #38919: Add port for h3dutil
by MacPorts 09 Mar '15

09 Mar '15

#38919: Add port for h3dutil --------------------------------+-------------------------------- Reporter: daniel.evestedt@… | Owner: macports-tickets@… Type: submission | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: fixed | Keywords: Port: h3dutil | --------------------------------+-------------------------------- Changes (by ryandesign@…): * status: new => closed * resolution: => fixed Comment: Replying to [comment:12 daniel.evestedt@…]: > How are you using 1.3.0 though? 1.2.0 seems to be the one in the current MacPorts version for me at least. There is no MacPorts version of h3dutil yet; this ticket is as yet unresolved. When the ticket was filed, 1.2.0 was presumably the current version, and I experienced the described problem with it. I then saw that in the mean time 1.3.0 had been released, and I updated my local portfile to that version, but the problem remained. I have identified the portion of h3dutils' CMakeLists.txt responsible for this and have added a patch to correct it. Replying to [comment:13 daniel.evestedt@…]: > The dcmtk that is used for Mavericks is a snapshot version of the dcmtk code and not an official release. It seems to not be in a fully stable state yet. There are two ways to build dcmtk, CMake or configure. If using CMake dcmtk build will fail with the same errors as H3DUtil when linking applications or shared libraries. configure seems to work though. dcmtk was changed to use a snapshot for all OS X versions, and to build using cmake, in r128998, so its behavior is now consistent across OS X versions. > I would recommend to have the default build of dcmtk to be without libiconv and add support for it as a variant. Otherwise all libraries that previously used MacPorts dcmtk will fail on Mavericks. This is not a good idea. This would result in the following problem: users who installed dcmtk with this hypothetical libiconv variant would then find that ports that depend on dcmtk would fail to build. > The best solution would be to provide shared libraries as well which would avoid this linking problem. However since the CMake build for shared libraries fails and configure does not seem to have this option there is no simple way to do that. dcmtk also installs dynamic libraries as of r128998. It seems the undefined symbol errors we were experiencing with h3dutils on Mavericks and later due to the snapshot are no longer occurring, so there's no longer a reason not to commit this port. Committed it in r133713. Not previously discussed: I added a zlib dependency because it does link with it. -- Ticket URL: <https://trac.macports.org/ticket/38919#comment:14> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47081: Configuration error trying to install hugin-app
by MacPorts 09 Mar '15

09 Mar '15

#47081: Configuration error trying to install hugin-app ---------------------------------------+-------------------------------- Reporter: malcolm@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: hugin-app, CMake, Lensfun | Port: hugin-app ---------------------------------------+-------------------------------- Cannot get hugin-app to install. OSx 10.10.2 Log seems to show CMake error with Lensfun is the problem. As far as I can tell Lensfun has installed correctly but still getting the error. Relevant part (end of) main.log follows ;- :info:configure -- Current HG revision is 4692917e7a55 :info:configure -- Assuming this is a tarball (release) build for 2013.0.0 :info:configure -- Found TIFF: /opt/local/include :info:configure -- Found JPEG: /opt/local/include :info:configure -- Found PNG: /opt/local/include :info:configure -- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig :info:configure -- Found OPENEXR: /opt/local/lib/libImath.dylib;/opt/local/lib/libIlmImf.dylib;/opt/local/lib/libIex.dylib;/opt/local/lib/libHalf.dylib;/opt/local/lib/libIlmThread.dylib :info:configure -- GLUT Found :info:configure -- Found Glew: /opt/local/lib/libGLEW.dylib :info:configure -- libpano13 version: 2.9.18 major 2 minor 9 patch 18 :info:configure -- Boost version: 1.57.0 :info:configure -- Found the following Boost libraries: :info:configure -- thread :info:configure -- date_time :info:configure -- regex :info:configure -- filesystem :info:configure -- iostreams :info:configure -- system :info:configure -- signals :info:configure -- Program msgfmt found (/opt/local/bin/msgfmt) :info:configure -- ZThread library not found. falling back to included copy :info:configure -- flann library found :info:configure CMake Error at CMakeModules/FindPackageHandleStandardArgs.cmake:51 (MESSAGE): :info:configure Could not find REQUIRED package Lensfun :info:configure Call Stack (most recent call first): :info:configure CMakeModules/FindLensfun.cmake:33 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) :info:configure CMakeLists.txt:303 (FIND_PACKAGE) :info:configure :info:configure :info:configure -- Configuring incomplete, errors occurred! :info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_graphics_hugin-app/hugin- app/work/hugin-2013.0.0/CMakeFiles/CMakeOutput.log". :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_graphics_hugin-app/hugin- app/work/hugin-2013.0.0" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DINSTALL_OSX_BUNDLE_DIR=/Applications/MacPorts -DPYTHON_EXECUTABLE=/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python -DPYTHON_INCLUDE_DIR=/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -DPYTHON_LIBRARY=/opt/local/lib/libpython2.7.dylib -DwxWidgets_CONFIG_EXECUTABLE=/opt/local/Library/Frameworks/wxWidgets.framework/Versions/wxWidgets/3.0/bin /wx-config -DwxWidgets_wxrc_EXECUTABLE=/opt/local/Library/Frameworks/wxWidgets.framework/Versions/wxWidgets/3.0/bin/wxrc -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.10" -DCMAKE_OSX_SYSROOT="/" :info:configure Exit code: 1 :error:configure org.macports.configure for port hugin-app returned: configure failure: command execution failed :debug:configure Error code: NONE :debug:configure Backtrace: configure failure: command execution failed while executing "portconfigure::configure_main org.macports.configure" ("eval" body line 1) invoked from within "eval $procedure $targetname" :info:configure Warning: targets not executed for hugin-app: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install :notice:configure Please see the log file for port hugin-app for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_graphics_hugin-app/hugin-app/main.log -- Ticket URL: <https://trac.macports.org/ticket/47081> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #45262: files hosted on ftp sites aren't getting mirrored
by MacPorts 09 Mar '15

09 Mar '15

#45262: files hosted on ftp sites aren't getting mirrored -----------------------------+--------------------- Reporter: jchauvel@… | Owner: admin@… Type: defect | Status: new Priority: Normal | Milestone: Component: server/hosting | Version: Resolution: | Keywords: Port: | -----------------------------+--------------------- Comment (by dluke@…): we probably need to ask the server admin ;-) -- Ticket URL: <https://trac.macports.org/ticket/45262#comment:11> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #45262: files hosted on ftp sites aren't getting mirrored
by MacPorts 09 Mar '15

09 Mar '15

#45262: files hosted on ftp sites aren't getting mirrored -----------------------------+--------------------- Reporter: jchauvel@… | Owner: admin@… Type: defect | Status: new Priority: Normal | Milestone: Component: server/hosting | Version: Resolution: | Keywords: Port: | -----------------------------+--------------------- Comment (by ryandesign@…): I don't know how to determine that. -- Ticket URL: <https://trac.macports.org/ticket/45262#comment:10> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #45262: files hosted on ftp sites aren't getting mirrored
by MacPorts 09 Mar '15

09 Mar '15

#45262: files hosted on ftp sites aren't getting mirrored -----------------------------+--------------------- Reporter: jchauvel@… | Owner: admin@… Type: defect | Status: new Priority: Normal | Milestone: Component: server/hosting | Version: Resolution: | Keywords: Port: | -----------------------------+--------------------- Comment (by dluke@…): What about their IPv6 addresses? -- Ticket URL: <https://trac.macports.org/ticket/45262#comment:9> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47073: Update: octave-struct 1.0.11
by MacPorts 09 Mar '15

09 Mar '15

#47073: Update: octave-struct 1.0.11 ----------------------------+-------------------------------- Reporter: mschamschula@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: haspatch | Port: octave-struct ----------------------------+-------------------------------- octave-struct has been updated to version 1.0.11: {{{ Summary of important user-visible changes for struct 1.0.11: ------------------------------------------------------------------- ** Compatible with Octave 4.0. }}} -- Ticket URL: <https://trac.macports.org/ticket/47073> MacPorts <https://www.macports.org/> Ports system for OS X

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