August 2015 - macports-tickets - lists.macosforge.org

[MacPorts] #48517: ifeffit - checksum org.macports.checksum for port ifeffit returned: Unable to verify file checksums
by MacPorts 10 Sep '15

10 Sep '15

#48517: ifeffit - checksum org.macports.checksum for port ifeffit returned: Unable to verify file checksums -------------------------------+-------------------------------- Reporter: laestudillowong@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: ifeffit | Port: ifeffit -------------------------------+-------------------------------- I try to update my Macports but it returns some problems with ifeffit: :info:checksum The correct checksum line may be: :info:checksum checksums rmd160 7b09aa5722a4aa638364c35e15d64b857cdb822b \ sha256 79fa938643a1417c5b01be4b6196bd0ea6bf40685448ba98546c7989b0f48a48 :error:checksum org.macports.checksum for port ifeffit returned: Unable to verify file checksums :debug:checksum Error code: NONE :debug:checksum Backtrace: Unable to verify file checksums while executing "portchecksum::checksum_main org.macports.checksum" ("eval" body line 1) invoked from within "eval $procedure $targetname" :info:checksum Warning: targets not executed for ifeffit: org.macports.install org.macports.checksum org.macports.extract org.macports.patch org.macports.configure org.macports.build org.macports.destroot :notice:checksum Please see the log file for port ifeffit for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ifeffit/ifeffit/main.log -- Ticket URL: <https://trac.macports.org/ticket/48517> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #45911: py27-h5py @2.3.1_1 built against parallel HDF5 can't find mpi.h
by MacPorts 10 Sep '15

10 Sep '15

#45911: py27-h5py @2.3.1_1 built against parallel HDF5 can't find mpi.h -----------------------+-------------------------------- Reporter: willic3@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.2 Keywords: | Port: -----------------------+-------------------------------- Hi, I am attempting to build py27-h5py on Yosemite. I have the following hdf5 installed: hdf5 @1.8.13_0+cxx+gcc48+openmpi+szip. The difficulty is that openmpi puts headers in the subdirectory /opt/local/include/openmpi-gcc48, so when I try to build py27-h5py I get: In file included from h5py/defs.c:241: In file included from h5py/api_compat.h:27: In file included from /opt/local/include/hdf5.h:24: /opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file not found # include <mpi.h> ^ 1 warning and 1 error generated. I would think the problem could be avoided by either defining CPPFLAGS appropriately or by using mpicc for compilation. My system info: OS X 10.10 Xcode 6.1 clang: Apple LLVM version 6.0 (clang-600.0.54) (based on LLVM 3.5svn) Installed openmpi: openmpi-default @1.7.5_3+gcc48 (active) openmpi-gcc48 @1.7.5_3+fortran (active) Please let me know if you need any more info. Thanks, Charles -- Ticket URL: <https://trac.macports.org/ticket/45911> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48660: update xrg to 2.0
by MacPorts 10 Sep '15

10 Sep '15

#48660: update xrg to 2.0 --------------------+-------------------------------- Reporter: snc@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: xrg --------------------+-------------------------------- There's an update available for xrg, but I cannot get it to build. Partial patch attached. -- Ticket URL: <https://trac.macports.org/ticket/48660> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48632: port install boost +openmpi : build failure
by MacPorts 09 Sep '15

09 Sep '15

#48632: port install boost +openmpi : build failure ------------------------------+-------------------------------- Reporter: voiry_matthieu@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: ------------------------------+-------------------------------- Mac OS X 10.10.5 Xcode Version 6.4 (6E35b) {{{ ---> Computing dependencies for boost ---> Fetching archive for boost ---> Attempting to fetch boost-1.59.0_0+no_single+no_static+openmpi+python27.darwin_14.x86_64.tbz2 from http://lil.fr.packages.macports.org/boost ---> Attempting to fetch boost-1.59.0_0+no_single+no_static+openmpi+python27.darwin_14.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/boost ---> Attempting to fetch boost-1.59.0_0+no_single+no_static+openmpi+python27.darwin_14.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/boost ---> Fetching distfiles for boost ---> Verifying checksums for boost ---> Extracting boost ---> Applying patches to boost ---> Configuring boost ---> Building boost Error: org.macports.build for port boost returned: command execution failed Please see the log file for port boost for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_boost/boost/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port boost failed }}} -- Ticket URL: <https://trac.macports.org/ticket/48632> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47850: Error: Failed to install openmpi-default, staging to destroot
by MacPorts 09 Sep '15

09 Sep '15

#47850: Error: Failed to install openmpi-default, staging to destroot -------------------------------------------------+------------------------- Reporter: rmschroer40@… | Owner: macports- Type: defect | tickets@… Priority: Normal | Status: new Component: ports | Milestone: Keywords: openmpi-default, openmpi, destroot, | Version: 2.3.3 staging, dependency | Port: openmpi- | default -------------------------------------------------+------------------------- Staging openmpi-default into destroot Error: org.macports.destroot for port openmpi-default returned: command execution failed Error: Failed to install openmpi-default Please see the log file for port openmpi-default for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openmpi /openmpi-default/main.log -- Ticket URL: <https://trac.macports.org/ticket/47850> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48168: openmpi Update to 1.8.6
by MacPorts 09 Sep '15

09 Sep '15

#48168: openmpi Update to 1.8.6 -------------------------------------+-------------------------------- Reporter: hans.ekkehard.plesser@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: openmpi -------------------------------------+-------------------------------- The attached patch - updates openmpi to version 1.8.6 - adds 5.1 to the list of gcc versions It is my first attempt at updating a portfile, I hope it will be useful. -- Ticket URL: <https://trac.macports.org/ticket/48168> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48604: Dolfin install fails
by MacPorts 09 Sep '15

09 Sep '15

#48604: Dolfin install fails -----------------------------+-------------------------------- Reporter: eld.khattatov@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: dolfin -----------------------------+-------------------------------- Hello, When trying to install dolfin I am getting the following error message: {{{ ---> Computing dependencies for dolfin ---> Configuring dolfin Error: org.macports.configure for port dolfin returned: configure failure: command execution failed Please see the log file for port dolfin for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_dolfin/dolfin/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port dolfin failed }}} I have already installed py-ffc, py-fiat, py-instant and py-ufl of version 1.5.0, although there were two warnings during the installation of these: {{{ Warning: Error parsing file /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/ffc_time_ext/time_elements_ext.so: Error opening or reading file Warning: Error parsing file /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/ufc/_ufc.so: Error opening or reading file }}} The log file "main.log" is also attached, the error there is "ImportError: No module named ufc", however on the "ufc" port page it is written that it is no longer needed as it was included in ffc. Could you please recommend me the way of solving this issue? Thank you. -- Ticket URL: <https://trac.macports.org/ticket/48604> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48235: Cannot upgrade to slepc, possible mismatch b/w petsc and slepc
by MacPorts 09 Sep '15

09 Sep '15

#48235: Cannot upgrade to slepc, possible mismatch b/w petsc and slepc ------------------------+-------------------------------- Reporter: cpraveen@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: slepc ------------------------+-------------------------------- Hi I upgrade to petsc 3.5.3_2 but slepc latest version is showing as 3.5.3_1 I am not able to upgrade slepc. I have attached log file. -- Ticket URL: <https://trac.macports.org/ticket/48235> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48169: openmpi @1.7.5 enforces flat namespace, causing problems with some applications
by MacPorts 09 Sep '15

09 Sep '15

#48169: openmpi @1.7.5 enforces flat namespace, causing problems with some applications -------------------------------------+-------------------------------- Reporter: hans.ekkehard.plesser@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: openmpi -------------------------------------+-------------------------------- Per [118768], `configure.args` were extended to enforce a flat namespace when building OpenMPI. This was necessary to solve #42667 and #39826. Unfortunately, this causes problems for other applications which rely on two-level namespaces, e.g. when combining a C++ application using MPI with a Python interface. These problems disappear when [118768] is reversed. Since flat namespaces apparently are needed in some cases, and two-level namespaces in others, I think the openmpi port should have a variant that allows users to choose between flat and two-level namespaces. Unfortunately, the openmpi Portfile looks too intimidating for me to try to add such a variant. Since Apple deprecates flat namespaces ([https://developer.apple.com/library/mac/documentation/Porting/Conceptual/Po… Apple Developer Docs]) and many ports recently seem to have been transitioning to two-level namespaces, I would suggest to make two-level namespaces (i.e., pre-[11768] behavior) the default. -- Ticket URL: <https://trac.macports.org/ticket/48169> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48072: dolfin @1.5.0_2 command "import dolfin" fails in python
by MacPorts 09 Sep '15

09 Sep '15

#48072: dolfin @1.5.0_2 command "import dolfin" fails in python ------------------------+-------------------------------- Reporter: hgonzale@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: dolfin ------------------------+-------------------------------- Running the following command: {{{ % python -c "import dolfin" }}} generates the following error: {{{ Traceback (most recent call last): File "<string>", line 1, in <module> File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/dolfin/__init__.py", line 16, in <module> from . import cpp File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/dolfin/cpp/__init__.py", line 42, in <module> exec("from . import %s" % module_name) File "<string>", line 1, in <module> File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/dolfin/cpp/common.py", line 132, in <module> __pythonversion__ = "%d.%d.%d"%(tuple(map(int, [tmp[2], tmp[4], tmp[6]]))) ValueError: invalid literal for int() with base 10: 'a' }}} I'm using python version 2.7.10, installed using Macports. -- Ticket URL: <https://trac.macports.org/ticket/48072> MacPorts <https://www.macports.org/> Ports system for OS X

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