September 2015 - macports-tickets - lists.macosforge.org

[MacPorts] #45911: py27-h5py @2.3.1_1 built against parallel HDF5 can't find mpi.h
by MacPorts 10 Sep '15

10 Sep '15

#45911: py27-h5py @2.3.1_1 built against parallel HDF5 can't find mpi.h -----------------------+-------------------------------- Reporter: willic3@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.2 Keywords: | Port: -----------------------+-------------------------------- Hi, I am attempting to build py27-h5py on Yosemite. I have the following hdf5 installed: hdf5 @1.8.13_0+cxx+gcc48+openmpi+szip. The difficulty is that openmpi puts headers in the subdirectory /opt/local/include/openmpi-gcc48, so when I try to build py27-h5py I get: In file included from h5py/defs.c:241: In file included from h5py/api_compat.h:27: In file included from /opt/local/include/hdf5.h:24: /opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file not found # include <mpi.h> ^ 1 warning and 1 error generated. I would think the problem could be avoided by either defining CPPFLAGS appropriately or by using mpicc for compilation. My system info: OS X 10.10 Xcode 6.1 clang: Apple LLVM version 6.0 (clang-600.0.54) (based on LLVM 3.5svn) Installed openmpi: openmpi-default @1.7.5_3+gcc48 (active) openmpi-gcc48 @1.7.5_3+fortran (active) Please let me know if you need any more info. Thanks, Charles -- Ticket URL: <https://trac.macports.org/ticket/45911> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48815: py-hggit seems broken
by MacPorts 10 Sep '15

10 Sep '15

#48815: py-hggit seems broken -----------------------------+-------------------------------- Reporter: charlie.clark@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: py-hggit -----------------------------+-------------------------------- Something seems to have happened to hg-git extension for Mercurial. If the port is installed I cannot use Mercurial in the command line. This is a sample session and traceback. {{{ (openpyxl)fuchsia:openpyxl charlieclark$ hg status openpyxl *** failed to import extension hggit: No module named ignore ** Unbekannter Fehler - bitte melden auf: ** http://mercurial.selenic.com/wiki/BugTracker ** Python 2.7.10 (default, Aug 18 2015, 12:18:39) [GCC 4.2.1 Compatible Apple LLVM 6.1.0 (clang-602.0.53)] ** Mercurial Distributed SCM (Version 3.5-rc+12-a74e9806d17d) ** Erweiterungen geladen: strip, mq, rebase Traceback (most recent call last): File "/opt/local/bin/hg", line 43, in <module> mercurial.dispatch.run() File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/mercurial/dispatch.py", line 30, in run sys.exit((dispatch(request(sys.argv[1:])) or 0) & 255) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/mercurial/dispatch.py", line 92, in dispatch ret = _runcatch(req) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/mercurial/dispatch.py", line 163, in _runcatch return _dispatch(req) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/mercurial/dispatch.py", line 862, in _dispatch repo = hg.repository(ui, path=path) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/mercurial/hg.py", line 136, in repository peer = _peerorrepo(ui, path, create) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/mercurial/hg.py", line 123, in _peerorrepo obj = _peerlookup(path).instance(ui, path, create) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/mercurial/hg.py", line 93, in _peerlookup return thing(path) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/hggit/__init__.py", line 84, in _local p = urlcls(path).localpath() TypeError: 'NoneType' object is not callable }}} -- Ticket URL: <https://trac.macports.org/ticket/48815> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48660: update xrg to 2.0
by MacPorts 10 Sep '15

10 Sep '15

#48660: update xrg to 2.0 --------------------+-------------------------------- Reporter: snc@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: xrg --------------------+-------------------------------- There's an update available for xrg, but I cannot get it to build. Partial patch attached. -- Ticket URL: <https://trac.macports.org/ticket/48660> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #40644: sudo: fails to switch to other user than root
by MacPorts 09 Sep '15

09 Sep '15

#40644: sudo: fails to switch to other user than root ------------------------------+----------------------------- Reporter: Peter.Danecek@… | Owner: youvegotmoxie@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Resolution: | Keywords: haspatch Port: sudo | ------------------------------+----------------------------- Changes (by ryandesign@…): * cc: ryandesign@… (added) * keywords: => haspatch Comment: Could you elaborate on the fix you proposed in #48816? Was this problem reported to the developers of sudo? If so, what is the bug report URL? Did they agree that this is the correct solution? -- Ticket URL: <https://trac.macports.org/ticket/40644#comment:9> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48816: sudo: bugfix
by MacPorts 09 Sep '15

09 Sep '15

#48816: sudo: bugfix -----------------------------+-------------------------------- Reporter: youvegotmoxie@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: haspatch | Port: sudo -----------------------------+-------------------------------- Fixes https://trac.macports.org/ticket/40644 -- Ticket URL: <https://trac.macports.org/ticket/48816> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48812: pixz @1.0.3_0: missing asciidoc build dependency
by MacPorts 09 Sep '15

09 Sep '15

#48812: pixz @1.0.3_0: missing asciidoc build dependency ----------------------------+-------------------------------- Reporter: mschamschula@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: haspatch | Port: pixz ----------------------------+-------------------------------- When upgrading pixz 1.0.3, I got the following error: {{{ :info:configure checking for a2x... no :info:configure configure: error: AsciiDoc not found. }}} The problem is resolved by adding asciidoc to depends_build. -- Ticket URL: <https://trac.macports.org/ticket/48812> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #37299: problems compiling hdf5 port with fortran variant
by MacPorts 09 Sep '15

09 Sep '15

#37299: problems compiling hdf5 port with fortran variant ----------------------------+--------------------- Reporter: jvianalopes@… | Owner: mmoll@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Resolution: fixed | Keywords: Port: hdf5 | ----------------------------+--------------------- Changes (by sean@…): * status: new => closed * resolution: => fixed Comment: Fixed in r140147. -- Ticket URL: <https://trac.macports.org/ticket/37299#comment:9> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48632: port install boost +openmpi : build failure
by MacPorts 09 Sep '15

09 Sep '15

#48632: port install boost +openmpi : build failure ------------------------------+-------------------------------- Reporter: voiry_matthieu@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: ------------------------------+-------------------------------- Mac OS X 10.10.5 Xcode Version 6.4 (6E35b) {{{ ---> Computing dependencies for boost ---> Fetching archive for boost ---> Attempting to fetch boost-1.59.0_0+no_single+no_static+openmpi+python27.darwin_14.x86_64.tbz2 from http://lil.fr.packages.macports.org/boost ---> Attempting to fetch boost-1.59.0_0+no_single+no_static+openmpi+python27.darwin_14.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/boost ---> Attempting to fetch boost-1.59.0_0+no_single+no_static+openmpi+python27.darwin_14.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/boost ---> Fetching distfiles for boost ---> Verifying checksums for boost ---> Extracting boost ---> Applying patches to boost ---> Configuring boost ---> Building boost Error: org.macports.build for port boost returned: command execution failed Please see the log file for port boost for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_boost/boost/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port boost failed }}} -- Ticket URL: <https://trac.macports.org/ticket/48632> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48775: rust: update to 1.2.0
by MacPorts 09 Sep '15

09 Sep '15

#48775: rust: update to 1.2.0 ----------------------+-------------------- Reporter: sean@… | Owner: g5pw@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: haspatch | Port: ----------------------+-------------------- I've been looking at rust and thought I'd upgrade it to 1.2.0. I think the bootstrapping is no longer needed since version 1.0 (the one we were using was old as well). Here is a patch for removing the bootstrapping code and preferring clang. Since I'm new to rust, I was hoping someone could give this a once over. -- Ticket URL: <https://trac.macports.org/ticket/48775> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47850: Error: Failed to install openmpi-default, staging to destroot
by MacPorts 09 Sep '15

09 Sep '15

#47850: Error: Failed to install openmpi-default, staging to destroot -------------------------------------------------+------------------------- Reporter: rmschroer40@… | Owner: macports- Type: defect | tickets@… Priority: Normal | Status: new Component: ports | Milestone: Keywords: openmpi-default, openmpi, destroot, | Version: 2.3.3 staging, dependency | Port: openmpi- | default -------------------------------------------------+------------------------- Staging openmpi-default into destroot Error: org.macports.destroot for port openmpi-default returned: command execution failed Error: Failed to install openmpi-default Please see the log file for port openmpi-default for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openmpi /openmpi-default/main.log -- Ticket URL: <https://trac.macports.org/ticket/47850> MacPorts <https://www.macports.org/> Ports system for OS X

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