March 2016 - macports-tickets - lists.macosforge.org

[MacPorts] #48709: py-notebook: script to launch with jupyter is not created
by MacPorts 25 Mar '16

25 Mar '16

#48709: py-notebook: script to launch with jupyter is not created ----------------------------------+-------------------------------- Reporter: michelle.lynn.gill@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: ipython, jupyter | Port: py-notebook ----------------------------------+-------------------------------- The Jupyter version of notebook does not create a command line launch script and thus will not launch from the command line with `jupyter notebook`. Other subports in this new family, such as py-nbconvert, have a script associated with them called `jupyter-nbconvert-2.7` and `jupyter- nbconvert-3.4` (for python 2.7 and 3.4), that resides in `/Volumes/Files/macports/Library/Frameworks/Python.framework/Versions/$pythonversion/bin/jupyter` and is linked to in MacPorts `bin` directory. The analogous version of this script, presumably called `jupyter- notebook-$pythonversion` for the notebook, is nowhere to be found in my installation. When I create such a script (see below) and name/link it appropriately, the notebook will launch from the command line as expected. Here is the script that allows me to launch notebook for python 2.7. I borrowed most of this code from what is installed by conda for notebook. {{{ #!/Volumes/Files/macports/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python if __name__ == '__main__': import sys from notebook.notebookapp import main sys.exit(main()) }}} This is a completely fresh installation of MacPorts as I had to setup a new computer yesterday. Thus, there shouldn't be any IPython 3 leftovers causing this issue. Also of note is that my MacPorts installation is in a custom location, so all of my ports are compiled from source. -- Ticket URL: <https://trac.macports.org/ticket/48709> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50569: Error in pygments after upgrade from 2.0.2_0 to 2.1_0
by MacPorts 25 Mar '16

25 Mar '16

#50569: Error in pygments after upgrade from 2.0.2_0 to 2.1_0 ---------------------------+-------------------------------- Reporter: rpspringuel@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: py27-pygments ---------------------------+-------------------------------- I use pygments through the MacPorts installation py-pygments package and after updating from 2.0.2 to 2.1 yesterday (a process that went off without a hitch) have run into an error. When I invoke `pygmentize -V` at the command-line I get the following: {{{ Traceback (most recent call last): File "/opt/local/bin/pygmentize", line 5, in <module> from pkg_resources import load_entry_point File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pkg_resources/__init__.py", line 3138, in <module> @_call_aside File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pkg_resources/__init__.py", line 3124, in _call_aside f(*args, **kwargs) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pkg_resources/__init__.py", line 3151, in _initialize_master_working_set working_set = WorkingSet._build_master() File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pkg_resources/__init__.py", line 663, in _build_master return cls._build_from_requirements(__requires__) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pkg_resources/__init__.py", line 676, in _build_from_requirements dists = ws.resolve(reqs, Environment()) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pkg_resources/__init__.py", line 849, in resolve raise DistributionNotFound(req, requirers) pkg_resources.DistributionNotFound: The 'Pygments==2.0.2' distribution was not found and is required by the application }}} That last line tells me `pygmentize` is looking for the wrong version. If I revert the py27-pygments (which py-pygments depends on) package to 2.0.2_0 then the error goes away, but of course that's because I'm using the old version (I do not need to revert the py-pygments package). Using terminal for further investigation I did/got the following: {{{ cd / sudo find . -name "pygmentize" -print -xdev ./opt/local/bin/pygmentize ./opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/pygmentize ./usr/local/bin/pygmentize }}} Invoking each of these commands specifically, the first one fails with the above error while the other two work fine. Using `which` I find that the first and third are in PATH with the first (the one which fails) being first. Further testing also shows that the third is a symlink to the second, but the first is a normal file. As a final check I do/get the following: {{{ sudo find . -name "pygments" -print -xdev -type d ./Applications/calibre.app/Contents/Resources/Python/site- packages/pygments ./opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pygments }}} The first pygments site-package is safely tucked away inside an application bundle, so it's shouldn't be causing the problems. The second is the MacPorts installed one. Looking inside it, I can clearly see that the version is 2.1 after the update. My conclusion from all this is that `/opt/local/bin/pygmentize` was not updated properly when py-pygments (and py27-pygments) was updated from 2.0.2 to 2.1. What's my best course of action for fixing this problem? -- Ticket URL: <https://trac.macports.org/ticket/50569> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #38892: py*-flask: missing dep on py-distribute
by MacPorts 25 Mar '16

25 Mar '16

#38892: py*-flask: missing dep on py-distribute ---------------------------+-------------------------- Reporter: webaccount@… | Owner: ryandesign@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: fixed | Keywords: Port: py-flask | ---------------------------+-------------------------- Changes (by petr@…): * status: new => closed * resolution: => fixed Comment: This probably rarely surfaces, because the dependencies `werkzeug` and `jinja2` have `setuptools` as lib dependencies. However formally `flask` should have `setuptools` as build dependency. Added in r147076 and closing as fixed. -- Ticket URL: <https://trac.macports.org/ticket/38892#comment:6> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50290: postgresql95 @9.5.0 +universal configure phase fails
by MacPorts 25 Mar '16

25 Mar '16

#50290: postgresql95 @9.5.0 +universal configure phase fails --------------------------+-------------------------- Reporter: ryandesign@… | Owner: mww@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.99 Keywords: | Port: postgresql95 --------------------------+-------------------------- Configuring postgresql95 @9.5.0 fails when the universal variant is used, but works without the universal variant. -- Ticket URL: <https://trac.macports.org/ticket/50290> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47390: Upgrade Django to 1.8
by MacPorts 25 Mar '16

25 Mar '16

#47390: Upgrade Django to 1.8 --------------------+-------------------------------- Reporter: my@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: django | Port: py-django --------------------+-------------------------------- Since Django 1.8 was released on April 2, please update it to the latest version. Thanks!! -- Ticket URL: <https://trac.macports.org/ticket/47390> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50964: xymon-client 4.3.27 update
by MacPorts 25 Mar '16

25 Mar '16

#50964: xymon-client 4.3.27 update ---------------------------------+-------------------------------- Reporter: fclaire@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: haspatch maintainer | Port: xymon-client ---------------------------------+-------------------------------- Please find attached the Portfile patch for Xymon client version 4.3.27. Thanks for checking and committing. -- Ticket URL: <https://trac.macports.org/ticket/50964> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50962: ghc 7.8.3 | on Snow Leopard | bus error: make/package-data.mk
by MacPorts 25 Mar '16

25 Mar '16

#50962: ghc 7.8.3 | on Snow Leopard | bus error: make/package-data.mk -----------------------+-------------------------------- Reporter: drennan@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: -----------------------+-------------------------------- Trying to install pandoc. It gets through the whole ghc installation, and then gives me a bus error. {{{ [73 of 73] Compiling Main ( utils/ghc-cabal/Main.hs, bootstrapping/Main.o ) Linking utils/ghc-cabal/dist/build/tmp/ghc-cabal ... "touch" utils/ghc-cabal/dist/build/tmp/ghc-cabal "cp" utils/ghc-cabal/dist/build/tmp/ghc-cabal inplace/bin/ghc-cabal "inplace/bin/ghc-cabal" configure libraries/Cabal/Cabal dist-boot "" --with-ghc="/Volumes/DEV0/share/ghc-bootstrap/bin/ghc" --with-ghc- pkg="/Volumes/DEV0/share/ghc-bootstrap/bin/ghc-pkg" --package- db=/Volumes/DEV0/var/macports/build/_Volumes_DEV0_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/work/ghc-7.8.3/libraries/bootstrapping.conf --disable-library-for-ghci --enable-library-vanilla --disable-library- profiling --disable-shared --configure-option=CFLAGS=" -U__i686 -m32 -fno- stack-protector " --configure-option=LDFLAGS=" -m32 " --configure- option=CPPFLAGS=" -m32 " --gcc-options=" -U__i686 -m32 -fno-stack- protector -m32 " --configure-option=--with-iconv- includes="/Volumes/DEV0/include" --configure-option=--with-iconv- libraries="/Volumes/DEV0/lib" --configure-option=--with-gmp- includes="/Volumes/DEV0/include" --configure-option=--with-gmp- libraries="/Volumes/DEV0/lib" --constraint "Cabal == 1.18.1.3" --constraint "hpc == 0.6.0.1" --constraint "bin-package-db == 0.0.0.0" --constraint "hoopl == 3.10.0.1" --constraint "transformers == 0.3.0.0" --constraint "terminfo == 0.4.0.0" --with-gcc="/Volumes/DEV0/bin/clang- mp-3.4" --configure-option=--with-cc="/Volumes/DEV0/bin/clang-mp-3.4" --with-ar="/Volumes/DEV0/bin/ar" --with-ranlib="/Volumes/DEV0/bin/ranlib" "inplace/bin/ghc-cabal" configure utils/hsc2hs dist "" --with- ghc="/Volumes/DEV0/share/ghc-bootstrap/bin/ghc" --with-ghc- pkg="/Volumes/DEV0/share/ghc-bootstrap/bin/ghc-pkg" --package- db=/Volumes/DEV0/var/macports/build/_Volumes_DEV0_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/work/ghc-7.8.3/libraries/bootstrapping.conf --disable-library-for-ghci --disable-library-vanilla --disable-library- profiling --disable-shared --configure-option=CFLAGS=" -U__i686 -m32 -fno- stack-protector " --configure-option=LDFLAGS=" -m32 " --configure- option=CPPFLAGS=" -m32 " --gcc-options=" -U__i686 -m32 -fno-stack- protector -m32 " --configure-option=--with-iconv- includes="/Volumes/DEV0/include" --configure-option=--with-iconv- libraries="/Volumes/DEV0/lib" --configure-option=--with-gmp- includes="/Volumes/DEV0/include" --configure-option=--with-gmp- libraries="/Volumes/DEV0/lib" --constraint "Cabal == 1.18.1.3" --constraint "hpc == 0.6.0.1" --constraint "bin-package-db == 0.0.0.0" --constraint "hoopl == 3.10.0.1" --constraint "transformers == 0.3.0.0" --constraint "terminfo == 0.4.0.0" --with-gcc="/Volumes/DEV0/bin/clang- mp-3.4" --configure-option=--with-cc="/Volumes/DEV0/bin/clang-mp-3.4" --with-ar="/Volumes/DEV0/bin/ar" --with-ranlib="/Volumes/DEV0/bin/ranlib" make[1]: *** [libraries/Cabal/Cabal/dist-boot/package-data.mk] Bus error make[1]: *** Waiting for unfinished jobs.... make[1]: *** [utils/hsc2hs/dist/package-data.mk] Bus error make: *** [all] Error 2 make: Leaving directory `/Volumes/DEV0/var/macports/build/_Volumes_DEV0_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/work/ghc-7.8.3' Command failed: cd "/Volumes/DEV0/var/macports/build/_Volumes_DEV0_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/work/ghc-7.8.3" && /usr/bin/make -j2 -w all VERBOSE=1 }}} Any help is appreciated! -- Ticket URL: <https://trac.macports.org/ticket/50962> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50960: [Update] Percona MySQL to 5.7
by MacPorts 25 Mar '16

25 Mar '16

#50960: [Update] Percona MySQL to 5.7 --------------------+------------------------------------- Reporter: mark@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: percona, percona-server --------------------+------------------------------------- They have made 5.7 the GA version: https://www.percona.com/blog/2016/03/15 /percona-server-5-7-11-4-is-now-available/ This would bring it up to date with the mysql57/mysql57-server ports. -- Ticket URL: <https://trac.macports.org/ticket/50960> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50956: armadillo @6.600.4_0: update to 6.600.5
by MacPorts 25 Mar '16

25 Mar '16

#50956: armadillo @6.600.4_0: update to 6.600.5 ---------------------------------+-------------------------------- Reporter: mschamschula@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: haspatch maintainer | Port: armadillo ---------------------------------+-------------------------------- armadillo has been updated to version 6.600.5. -- Ticket URL: <https://trac.macports.org/ticket/50956> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #6787: Postfix daemons install location.
by MacPorts 24 Mar '16

24 Mar '16

#6787: Postfix daemons install location. ------------------------------+--------------------- Reporter: eloy.de.enige@… | Owner: yeled@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 1.0 Resolution: fixed | Keywords: Port: postfix | ------------------------------+--------------------- Changes (by ryandesign@…): * port: => postfix Old description: > The daemons are being installed into ${prefix}/libexec, > but they are expected to be in ${prefix}/libexec/postfix > > Here's the diff: > 80c80 > < daemon_directory=${prefix}/libexec/postfix \ > --- > > daemon_directory=${prefix}/libexec \ > > Cheers, > Eloy. New description: The daemons are being installed into ${prefix}/libexec, but they are expected to be in ${prefix}/libexec/postfix Here's the diff: {{{ 80c80 < daemon_directory=${prefix}/libexec/postfix \ --- > daemon_directory=${prefix}/libexec \ }}} Cheers,\\ Eloy. -- -- Ticket URL: <https://trac.macports.org/ticket/6787#comment:4> MacPorts <https://www.macports.org/> Ports system for OS X

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