March 2016 - macports-tickets - lists.macosforge.org

[MacPorts] #50777: new py-pymol package to replace pymol package and support python variants
by MacPorts 19 Mar '16

19 Mar '16

#50777: new py-pymol package to replace pymol package and support python variants -----------------------------------+-------------------------------- Reporter: howarth.at.macports@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: pymol -----------------------------------+-------------------------------- The attached packaging for a new py-pymol package replaces the existing pymol package and replaces it with python variants for 27, 33, 34 and 35. -- Ticket URL: <https://trac.macports.org/ticket/50777> MacPorts <https://www.macports.org/> Ports system for OS X

1 4

[MacPorts] #50779: pymol-1.7.7.2-2
by MacPorts 19 Mar '16

19 Mar '16

#50779: pymol-1.7.7.2-2 -----------------------------------+-------------------------------- Reporter: howarth.at.macports@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: pymol -----------------------------------+-------------------------------- Portfile changes to obsolete the existing pymol packaging in favor of the new py27-pymol variant from the py-pymol packaging in ticket #50777. -- Ticket URL: <https://trac.macports.org/ticket/50779> MacPorts <https://www.macports.org/> Ports system for OS X

1 2

[MacPorts] #50780: pymol-1.8.1.0-1
by MacPorts 19 Mar '16

19 Mar '16

#50780: pymol-1.8.1.0-1 -----------------------------------+-------------------------------- Reporter: howarth.at.macports@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: pymol -----------------------------------+-------------------------------- Update of pymol to 1.8.1.0 which now supports python3 and addition of variants to support python27, python33, python34 and python35 variants. -- Ticket URL: <https://trac.macports.org/ticket/50780> MacPorts <https://www.macports.org/> Ports system for OS X

1 7

[MacPorts] #50893: gource: build fails on OS X 10.6.8
by MacPorts 19 Mar '16

19 Mar '16

#50893: gource: build fails on OS X 10.6.8 ---------------------------+-------------------------------- Reporter: SlaunchaMan@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: gource ---------------------------+-------------------------------- Building gource failed on a MacBook (Intel Core 2 Duo) running OS X 10.6.8. Log file to be attached. -- Ticket URL: <https://trac.macports.org/ticket/50893> MacPorts <https://www.macports.org/> Ports system for OS X

1 7

[MacPorts] #50924: py27-pmw @2.0.0_1: install failure
by MacPorts 19 Mar '16

19 Mar '16

#50924: py27-pmw @2.0.0_1: install failure -----------------------------+-------------------------------- Reporter: md14-macports@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: py-pmw -----------------------------+-------------------------------- The py27-pmw port fails to install. {{{ $ sudo port -vs install py27-pmw ... byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py- pmw/py27-pmw/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/Pmw/Pmw_1_3_3/tests/TestVersion.py to TestVersion.pyc byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py- pmw/py27-pmw/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/Pmw/Pmw_1_3_3/tests/TextDialog_test.py to TextDialog_test.pyc byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py- pmw/py27-pmw/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/Pmw/Pmw_1_3_3/tests/Tkinter_test.py to Tkinter_test.pyc running install_egg_info Writing /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py- pmw/py27-pmw/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/Pmw-2.0.0-py2.7.egg-info Error: org.macports.destroot for port py27-pmw returned: could not read "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py- pmw/py27-pmw/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/Pmw/Pmw_2_0_0/demos/All.py": no such file or directory Warning: targets not executed for py27-pmw: org.macports.activate org.macports.destroot org.macports.install Please see the log file for port py27-pmw for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py-pmw/py27-pmw/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port py27-pmw failed }}} Notice that files under Pmw/Pmw_1_3_3 were built, but post-destroot in the Portfile refers to Pmw/Pmw_2_0_0. The problem seems to have been introduced by the changes for #47246. -- Ticket URL: <https://trac.macports.org/ticket/50924> MacPorts <https://www.macports.org/> Ports system for OS X

1 1

[MacPorts] #50923: htcondor: unregistered files installed on user systems
by MacPorts 18 Mar '16

18 Mar '16

#50923: htcondor: unregistered files installed on user systems --------------------------+----------------------- Reporter: ryandesign@… | Owner: aronnax@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: htcondor --------------------------+----------------------- These unexpected files are present on the buildbot workers: {{{ $ ls -l /opt/local/{bosco_install,condor_configure,condor_install} lrwxr-xr-x 1 root admin 20 Jun 9 2013 /opt/local/bosco_install -> ./sbin/bosco_install lrwxr-xr-x 1 root admin 23 Apr 15 2013 /opt/local/condor_configure -> ./sbin/condor_configure lrwxr-xr-x 1 root admin 21 Apr 15 2013 /opt/local/condor_install -> ./sbin/condor_install }}} These files are not registered to a port: {{{ $ port provides /opt/local/{bosco_install,condor_configure,condor_install} /opt/local/bosco_install is not provided by a MacPorts port. /opt/local/condor_configure is not provided by a MacPorts port. /opt/local/condor_install is not provided by a MacPorts port. }}} They were probably installed there by an old version of htcondor. (I have not checked if the current version 8.4.3 still puts them there.) Since these files appear on the buildbot worker, I expect them to also be on systems of users who installed the port from source. The port should have a pre-activate (or post-activate; doesn't much matter in this case) block that checks if these files exist and are unregistered, and if so removes them. Note that because these are symlinks, you cannot use `file exists` because that will test for the existence of the file the symlink points to, not the existence of the symlink itself. In these situations I use `file type` inside a `catch`. The code I added to nedi in r143403 is a good example to follow. Something like: {{{ pre-activate { # Remove symlinks htcondor installed directly, bypassing the destroot. # Can be removed after April 2017. foreach f "${prefix}/bosco_install ${prefix}/condor_configure ${prefix}/condor_install" { if {![catch {file type ${f}}] && [registry_file_registered ${f}] == "0"} { if {[catch {delete ${f}}]} { ui_warn "Cannot delete ${f}; please remove it manually" } } } } }}} If the current version of htcondor still installs these files, it should also be patched not to do so. -- Ticket URL: <https://trac.macports.org/ticket/50923> MacPorts <https://www.macports.org/> Ports system for OS X

1 1

[MacPorts] #50922: htcondor: make python27 the default only if no other python variant already selected
by MacPorts 18 Mar '16

18 Mar '16

#50922: htcondor: make python27 the default only if no other python variant already selected --------------------------+----------------------- Reporter: ryandesign@… | Owner: aronnax@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: htcondor --------------------------+----------------------- The python27 variant should be made the default only if the user has not already selected another python variant, to prevent this problem: {{{ $ sudo port install htcondor +python34 Error: htcondor: Variant python27 conflicts with python34 Error: Unable to open port: Error evaluating variants }}} See PortfileRecipes#default_variants -- Ticket URL: <https://trac.macports.org/ticket/50922> MacPorts <https://www.macports.org/> Ports system for OS X

1 1

[MacPorts] #50921: htcondor: update to 8.4.4
by MacPorts 18 Mar '16

18 Mar '16

#50921: htcondor: update to 8.4.4 --------------------------+----------------------- Reporter: ryandesign@… | Owner: aronnax@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: htcondor --------------------------+----------------------- htcondor should be updated to the latest stable version, currently 8.4.4. The port is currently at 8.4.3 which has a checksum mismatch. {{{ $ sudo port extract htcondor ---> Fetching distfiles for htcondor ---> Attempting to fetch htcondor-8_4_3.tar.gz from https://github.com/htcondor/htcondor/tarball/V8_4_3 ---> Verifying checksums for htcondor Error: Checksum (rmd160) mismatch for htcondor-8_4_3.tar.gz Error: Checksum (sha256) mismatch for htcondor-8_4_3.tar.gz Error: org.macports.checksum for port htcondor returned: Unable to verify file checksums }}} -- Ticket URL: <https://trac.macports.org/ticket/50921> MacPorts <https://www.macports.org/> Ports system for OS X

1 1

[MacPorts] #50915: octave-netcdf @1.0.8_0: update to 1.0.9
by MacPorts 18 Mar '16

18 Mar '16

#50915: octave-netcdf @1.0.8_0: update to 1.0.9 ---------------------------------+-------------------------------- Reporter: mschamschula@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: haspatch maintainer | Port: octave-netcdf ---------------------------------+-------------------------------- octave-netcdf has been updated to version 1.0.9. New this version: * Fix bug writing NaNs -- Ticket URL: <https://trac.macports.org/ticket/50915> MacPorts <https://www.macports.org/> Ports system for OS X

1 1

[MacPorts] #50916: octave-database @2.3.2_0: update to 2.4.0
by MacPorts 18 Mar '16

18 Mar '16

#50916: octave-database @2.3.2_0: update to 2.4.0 ---------------------------------+-------------------------------- Reporter: mschamschula@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: haspatch maintainer | Port: octave-database ---------------------------------+-------------------------------- octave-database has been updated to version 2.4.0. New this version: * Added general package documentation. * New functions var2bytea and bytea2var, enabling storing Octave values of arbitrary type in a database. * Compatible with Octaves new exception-based error handling. Compatibility with old error handling up to Octave-4.0 is retained. * Fixed racing condition in pq_lo_view. * Fix: remove autoloaded function at package unload. Notes: * added octave-struct dependency * the default_postgresql_suffix check is broken -- Ticket URL: <https://trac.macports.org/ticket/50916> MacPorts <https://www.macports.org/> Ports system for OS X

1 1