April 2016 - macports-tickets - lists.macosforge.org

[MacPorts] #50707: gdal @2.0.2 Please enable PCRaster format
by MacPorts 12 May '16

12 May '16

#50707: gdal @2.0.2 Please enable PCRaster format -------------------------+-------------------------------- Reporter: o.schmitz@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: gdal -------------------------+-------------------------------- Can you please enable the PCRaster format (i.e. remove the --without- pcraster in the port file)? It is an internal format in GDAL and has no external dependencies. We (http://www.pcraster.eu) are finalising the OSX support of our software and file format support by the gdal tools is relevant for user's workflows (e.g. with QGIS). Thanks! Oliver -- Ticket URL: <https://trac.macports.org/ticket/50707> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #49905: Error installing py34-parsing
by MacPorts 11 May '16

11 May '16

#49905: Error installing py34-parsing -------------------------------+-------------------------------- Reporter: jianguohsiang82@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: -------------------------------+-------------------------------- I cannot install this port. The main.log file from /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py-parsing/py34-parsing/main.log is attached below. Thanks. -- Ticket URL: <https://trac.macports.org/ticket/49905> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47696: PETSc port doesn't compile with +complex
by MacPorts 11 May '16

11 May '16

#47696: PETSc port doesn't compile with +complex -------------------------------+-------------------------------- Reporter: drososkourounis@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: PETSc+complex | Port: -------------------------------+-------------------------------- Dear developers, I tried to compile slepc-3.5.3 with FEAST support. Unfortunately it reports that FEAST is supported only with complex numbers. {{{ :~/Work/Software/Optimization/FENICS/slepc-3.5.3$ ./configure --prefix=~/Work/Software/Optimization/FENICS/slepc-3.5.3/build --with- feast --with-feast- dir=~/Work/Software/Optimization/FENICS/FEAST/2.1/lib/osx --with-feast- flags='-lfeast_sparse -lfeast' Checking environment... Checking PETSc installation... ERROR: FEAST is supported only with complex numbers. ERROR: See "arch-darwin-c-opt/conf/configure.log" file for details }}} This happens because of the following: {{{ $cat config/feast.py }}} {{{ .......................................................................... def Check(conf,vars,cmake,tmpdir,directory,libs): if petscconf.SCALAR != 'complex': log.Exit('ERROR: FEAST is supported only with complex numbers.') }}} which means that PETSc needs to be compiled with +complex. I tried to compile PETSc this way and unfortunately no options succeeded. {{{ sudo port install petsc(a)3.5.3_1+accelerate+hypre+openmpi+parmetis+suitesparse+complex -mpich sudo port clean blabla sudo port uninstall blabla sudo port install petsc(a)3.5.3_1+accelerate+hypre+openmpi+parmetis+suitesparse+complex sudo port install petsc(a)3.5.3_1+accelerate+hypre+parmetis+suitesparse+complex }}} {{{ ~/Work/Software/Optimization/FENICS/slepc-3.5.3$ sudo port install petsc(a)3.5.3_1+accelerate+hypre+openmpi+parmetis+suitesparse+complex -mpich Password: ---> Computing dependencies for petsc ---> Fetching archive for petsc ---> Attempting to fetch petsc-3.5.3_1+accelerate+complex+hypre+openmpi+parmetis+suitesparse.darwin_13.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/petsc ---> Attempting to fetch petsc-3.5.3_1+accelerate+complex+hypre+openmpi+parmetis+suitesparse.darwin_13.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/petsc ---> Attempting to fetch petsc-3.5.3_1+accelerate+complex+hypre+openmpi+parmetis+suitesparse.darwin_13.x86_64.tbz2 from http://lil.fr.packages.macports.org/petsc ---> Fetching distfiles for petsc ---> Verifying checksums for petsc ---> Extracting petsc ---> Applying patches to petsc ---> Configuring petsc Error: org.macports.configure for port petsc returned: configure failure: command execution failed Please see the log file for port petsc for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_petsc/petsc/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port petsc failed But anyone of the above without the +complex works. Below I attach the error log }}} -- Ticket URL: <https://trac.macports.org/ticket/47696> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51244: lua51 port does not support dynamic libraries
by MacPorts 10 May '16

10 May '16

#51244: lua51 port does not support dynamic libraries -----------------------+-------------------------------- Reporter: proforg@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: lua51 -----------------------+-------------------------------- current build of lua51 package does not support dynamic libraries: {{{ ~>lua5.1 test.lua lua5.1: error loading module 'curl' from file '/opt/local/lib/lua/5.1/curl.so': dynamic libraries not enabled; check your Lua installation }}} as far as I can see, this problem is caused by custom CFLAGS passed to Makefile, so defaults (especially -DLUA_USE_LINUX), used for src/Makefile are not used {{{ DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_lua51/lua51/work/lua-5.1.5" && /usr/bin/make -w macosx V=5.1 R=5.1.5 PREFIX=/opt/local CC="/usr/bin/clang" LDFLAGS="-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64" CFLAGS="-Os -I/o pt/local/include -arch x86_64"' DEBUG: Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_lua51/lua51/work/lua-5. 1.5" && /usr/bin/make -w macosx V=5.1 R=5.1.5 PREFIX=/opt/local CC="/usr/bin/clang" LDFLAGS="-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64" CFLAGS="-Os -I/opt/local/include -arch x86_64" make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_lua51/lua51/work/lua-5.1.5' cd src && /Applications/Xcode.app/Contents/Developer/usr/bin/make macosx V=5.1 R=5.1.5 INSTALL_LIB=/opt/local/lib/lua-5.1 make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_lua51/lua51/work/lua-5.1.5/src ' /Applications/Xcode.app/Contents/Developer/usr/bin/make all MYCFLAGS ="-fno-common -DLUA_USE_LINUX" MYLIBS="-lreadline" make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_lua51/lua51/work/lua-5.1.5/src ' /usr/bin/clang -Os -I/opt/local/include -arch x86_64 -c -o lapi.o lapi.c }}} as a result, dynamic libraries are disabled. simplest fix would be to add -DLUA_USE_LINUX to Portfile's configure.cflags -- Ticket URL: <https://trac.macports.org/ticket/51244> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51278: cre2 - C wrapper for re2
by MacPorts 10 May '16

10 May '16

#51278: cre2 - C wrapper for re2 ---------------------+-------------------------------- Reporter: jhi@… | Owner: macports-tickets@… Type: request | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: ---------------------+-------------------------------- macports has the RE2 library available as devel/re2, which is great. What would make it even greater, is the C glue code (RE2 being in C++) called "cre2", available from https://github.com/marcomaggi/cre2 With this glue C projects can transparently use RE2, without having to do the extern "C" dance themselves. -- Ticket URL: <https://trac.macports.org/ticket/51278> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50950: OpenBLAS @0.2.17_0: "Undefined symbols for architecture x86_64"
by MacPorts 08 May '16

08 May '16

#50950: OpenBLAS @0.2.17_0: "Undefined symbols for architecture x86_64" ----------------------------+-------------------------------- Reporter: mschamschula@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: OpenBLAS ----------------------------+-------------------------------- While building OpenBLAS 0.2.17 under Yosemite, I get a series of "Undefined symbols for architecture x86_64" errors. -- Ticket URL: <https://trac.macports.org/ticket/50950> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50381: ncarg fails to build
by MacPorts 08 May '16

08 May '16

#50381: ncarg fails to build -----------------------+-------------------------------- Reporter: bmoebis@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: -----------------------+-------------------------------- version:1 :debug:main Executing org.macports.main (hdfeos) :debug:main Skipping completed org.macports.archivefetch (hdfeos) :debug:main Skipping completed org.macports.fetch (hdfeos) :debug:main Skipping completed org.macports.checksum (hdfeos) :debug:main Skipping completed org.macports.extract (hdfeos) :debug:main Skipping completed org.macports.patch (hdfeos) :debug:main Skipping completed org.macports.configure (hdfeos) :debug:build build phase started at Wed Jan 20 16:43:10 AEDT 2016 :notice:build ---> Building hdfeos :debug:build Executing org.macports.build (hdfeos) :debug:build Environment: CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/.CC_PRINT_OPTIONS' CPATH='/opt/local/include' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.11' :debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos" && /usr/bin/make -j8 -w all' :debug:build Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos" && /usr/bin/make -j8 -w all :info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos' :info:build Making all in gctp :info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos/gctp' :info:build Making all in src :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos/gctp/src' :info:build make[2]: Nothing to be done for `all'. :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos/gctp/src' :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos/gctp' :info:build make[2]: Nothing to be done for `all-am'. :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos/gctp' :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos/gctp' :info:build Making all in src :info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos/src' :info:build /bin/sh ../libtool --mode=link --tag=CC /opt/local/bin/h4cc -Os -arch x86_64 -I/opt/local/include -Wl,-single_module -o libhdfeos.la -rpath /opt/local/lib EHapi.lo GDapi.lo PTapi.lo SWapi.lo -lmfhdf -ldf -lz -ljpeg -lm :info:build libtool: link: warning: `/usr/local/lib/libsz.la' seems to be moved :info:build libtool: link: warning: `/usr/local/lib/libsz.la' seems to be moved :info:build /opt/local/bin/h4cc -dynamiclib -undefined dynamic_lookup -o .libs/libhdfeos.0.0.0.dylib .libs/EHapi.o .libs/GDapi.o .libs/PTapi.o .libs/SWapi.o /usr/local/lib/libmfhdf.a -L/usr/local/lib /usr/local/lib/libz.dylib /usr/local/lib/libdf.a -lz /usr/local/lib/libjpeg.dylib -lm -arch x86_64 -Wl,-single_module -install_name /opt/local/lib/libhdfeos.0.dylib -Wl,-compatibility_version -Wl,1 -Wl,-current_version -Wl,1.0 :info:build clang: error: no such file or directory: '/usr/local/lib/libjpeg.dylib' :info:build make[1]: *** [libhdfeos.la] Error 1 :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos/src' :info:build make: *** [all-recursive] Error 1 :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos' :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/work/hdfeos" && /usr/bin/make -j8 -w all :info:build Exit code: 2 :error:build org.macports.build for port hdfeos returned: command execution failed :debug:build Error code: CHILDSTATUS 33873 2 :debug:build Backtrace: command execution failed while executing "system -nice 0 $fullcmdstring" ("eval" body line 1) invoked from within "eval system $notty $nice \$fullcmdstring" invoked from within "command_exec build" (procedure "portbuild::build_main" line 8) invoked from within "portbuild::build_main org.macports.build" ("eval" body line 1) invoked from within "eval $procedure $targetname" :info:build Warning: targets not executed for hdfeos: org.macports.activate org.macports.build org.macports.destroot org.macports.install :error:build Failed to install hdfeos :debug:build Registry error: hdfeos5 not registered as installed & active. invoked from within "registry_active $subport" invoked from within "$workername eval registry_active \$subport" :notice:build Please see the log file for port hdfeos for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdfeos/hdfeos/main.log Done with OSX 10.11.2 -- Ticket URL: <https://trac.macports.org/ticket/50381> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50809: py-ttfquery @1.0.1 new Portfile
by MacPorts 07 May '16

07 May '16

#50809: py-ttfquery @1.0.1 new Portfile -------------------------+-------------------------------- Reporter: maugustin@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: py-ttfquery -------------------------+-------------------------------- I've added py-ttfquery I have problems with the download from sourceforge, but with a manual download the install run through. -- Ticket URL: <https://trac.macports.org/ticket/50809> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50638: gst @3.1_5
by MacPorts 07 May '16

07 May '16

#50638: gst @3.1_5 ------------------------+-------------------------------- Reporter: macports@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: gst ------------------------+-------------------------------- ---> Building gst Error: Failed to build gst: command execution failed Error: See /opt/local/var/macports/logs/_opt_mports_dports_lang_gst/gst/main.log for details. Error: Follow http://guide.macports.org/#project.tickets to report a bug. Error: Processing of port gst failed -- Ticket URL: <https://trac.macports.org/ticket/50638> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51245: libgcc-devel @6-20160421_0 build fails on OS X 10.10.5
by MacPorts 07 May '16

07 May '16

#51245: libgcc-devel @6-20160421_0 build fails on OS X 10.10.5 ------------------------+-------------------------------- Reporter: mopihopi@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: libgcc-devel ------------------------+-------------------------------- Upgrading libgccc-devel to @6-20160421_0 on OS X 10.10.5 results in a build failure, using Xcode 7.2.1 Build version 7C1002. {{{ ---> Computing dependencies for libgcc-devel ---> Fetching archive for libgcc-devel ---> Attempting to fetch libgcc-devel-6-20160421_0.darwin_14.x86_64.tbz2 from https://packages.macports.org/libgcc-devel ---> Attempting to fetch libgcc-devel-6-20160421_0.darwin_14.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/libgcc-devel ---> Attempting to fetch libgcc-devel-6-20160421_0.darwin_14.x86_64.tbz2 from http://lil.fr.packages.macports.org/libgcc-devel ---> Fetching distfiles for libgcc-devel ---> Attempting to fetch gcc-6-20160421.tar.bz2 from https://distfiles.macports.org/gcc6 ---> Attempting to fetch gcc-6-20160421.tar.bz2 from ftp://gcc.gnu.org/pub/gcc/snapshots/6-20160421/ ---> Verifying checksums for libgcc-devel ---> Extracting libgcc-devel ---> Configuring libgcc-devel ---> Building libgcc-devel Error: org.macports.build for port libgcc-devel returned: command execution failed Please see the log file for port libgcc-devel for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_gcc6 /libgcc-devel/main.log Error: Unable to upgrade port: 1 To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets }}} The same issue occurs on both the buildbot and locally.[[BR]] https://build.macports.org/builders/buildports-yosemite- x86_64/builds/9209/steps/compile/logs/stdio {{{ ... Comparing stages 2 and 3 warning: gcc/cc1-checksum.o differs warning: gcc/cc1obj-checksum.o differs warning: gcc/cc1objplus-checksum.o differs warning: gcc/cc1plus-checksum.o differs Bootstrap comparison failure! gcc/auto-profile.o differs gcc/bb-reorder.o differs gcc/build/genconfig.o differs gcc/build/genflags.o differs gcc/build/genpeep.o differs gcc/build/genrecog.o differs gcc/build/vec.o differs gcc/c/c-parser.o differs gcc/c/c-typeck.o differs gcc/cfganal.o differs gcc/combine.o differs gcc/cp/constexpr.o differs gcc/dwarf2out.o differs gcc/expmed.o differs gcc/fixed-value.o differs gcc/fortran/arith.o differs gcc/fortran/resolve.o differs gcc/fortran/trans-common.o differs gcc/fwprop.o differs gcc/graphite-scop-detection.o differs gcc/ipa-cp.o differs gcc/ipa-devirt.o differs gcc/ipa-icf.o differs gcc/ipa.o differs gcc/lto-cgraph.o differs gcc/postreload.o differs gcc/recog.o differs gcc/reload1.o differs gcc/rtlanal.o differs gcc/timevar.o differs gcc/tree-cfg.o differs gcc/tree-chkp-opt.o differs gcc/tree-data-ref.o differs gcc/tree-eh.o differs gcc/tree-into-ssa.o differs gcc/tree-parloops.o differs gcc/tree-sra.o differs gcc/tree-ssa-loop-ivopts.o differs gcc/tree-ssa-pre.o differs gcc/tree-ssa-structalias.o differs gcc/tree-vect-loop-manip.o differs gcc/tree.o differs gcc/varasm.o differs gcc/vec.o differs libcpp/expr.o differs make[2]: *** [compare] Error 1 make[2]: Leaving directory `/opt/local/var/macports/build/_opt_mports_dports_lang_gcc6/libgcc- devel/work/build' make[1]: *** [stage3-bubble] Error 2 make[1]: Leaving directory `/opt/local/var/macports/build/_opt_mports_dports_lang_gcc6/libgcc- devel/work/build' make: *** [bootstrap] Error 2 make: Leaving directory `/opt/local/var/macports/build/_opt_mports_dports_lang_gcc6/libgcc- devel/work/build' Command failed: cd "/opt/local/var/macports/build/_opt_mports_dports_lang_gcc6/libgcc- devel/work/build" && /usr/bin/make -j5 -w bootstrap Exit code: 2 Error: org.macports.build for port libgcc-devel returned: command execution failed }}} -- Ticket URL: <https://trac.macports.org/ticket/51245> MacPorts <https://www.macports.org/> Ports system for OS X

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