June 2016 - macports-tickets - lists.macosforge.org

[MacPorts] #50308: defect: python27
by MacPorts 09 Jul '16

09 Jul '16

#50308: defect: python27 -----------------------+-------------------------------- Reporter: smithsp@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: python27 -----------------------+-------------------------------- Without the line at https://github.com/python/cpython/blob/4a8f78007549daa9f23d32fb8f83c8e99260… /config-main.def#L68 I get lots of warnings about name2 not being found in the current theme. {{{ Warning: configHandler.py - IdleConf.GetOption - problem retrieving configuration option 'name2' from section 'Theme'. returning default value: '' }}} repeated at least 5 times when opening my GUI application. It would be nice if MacPorts could patch that one file during python installation until it is included in an upstream release. -- Ticket URL: <https://trac.macports.org/ticket/50308> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51670: octave-odepkg build fails with release of Octave 4 on macports
by MacPorts 09 Jul '16

09 Jul '16

#51670: octave-odepkg build fails with release of Octave 4 on macports ---------------------------------+-------------------------------- Reporter: hartman.jonathan2@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: octave-odepkg ---------------------------------+-------------------------------- So, I've been trying to install the port of the octave-ode package with the new install. It seems like the linger is looking for a directory that it can't find. I've attached the log file. -- Ticket URL: <https://trac.macports.org/ticket/51670> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51439: ghc: allow building with clang-3.4 or later
by MacPorts 08 Jul '16

08 Jul '16

#51439: ghc: allow building with clang-3.4 or later -------------------------+---------------------------- Reporter: mojca@… | Owner: kitchen.andy@… Type: enhancement | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: ghc -------------------------+---------------------------- I tried building ghc with clang 3.4 on 10.7 which worked fine. I have 3.4 and the latest one installed and it felt like a nuisance to install also version 3.5. It would be great if one could build with either clang compiler that's new enough, not just 3.5. -- Ticket URL: <https://trac.macports.org/ticket/51439> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #50480: GHC installation failed on El Capitan
by MacPorts 08 Jul '16

08 Jul '16

#50480: GHC installation failed on El Capitan ----------------------------+-------------------------------- Reporter: dan@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: ghc, elcapitan | Port: ghc ----------------------------+-------------------------------- This is the installation error: {{{ Immanuel:opt danghica$ sudo port clean ghc Password: ---> Cleaning ghc Immanuel:opt danghica$ sudo port install ghc ---> Computing dependencies for ghc ---> Fetching archive for ghc ---> Attempting to fetch ghc-7.8.3_4.darwin_15.i386.tbz2 from http://packages.macports.org/ghc ---> Attempting to fetch ghc-7.8.3_4.darwin_15.i386.tbz2 from http://fco.it.packages.macports.org/mirrors/macports-packages/ghc/ghc ---> Attempting to fetch ghc-7.8.3_4.darwin_15.i386.tbz2 from http://jnb.za.packages.macports.org/packages/ghc ---> Fetching distfiles for ghc ---> Verifying checksums for ghc ---> Extracting ghc ---> Applying patches to ghc ---> Configuring ghc ---> Building ghc Error: org.macports.build for port ghc returned: command execution failed Please see the log file for port ghc for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_ghc/ghc/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port ghc failed }}} Log is attached. There are segmentation faults during the execution of ghc-cabal. -- Ticket URL: <https://trac.macports.org/ticket/50480> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51239: [Port Abandoned] Ports maintained by dh
by MacPorts 07 Jul '16

07 Jul '16

#51239: [Port Abandoned] Ports maintained by dh -------------------------+------------------------------------------------- Reporter: mf2k@… | Owner: dh@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: py-apycot py-cog py-dateutil py- | epydoc py-logilab-common py-mako py-numpy py- | pylint sqsh -------------------------+------------------------------------------------- [wiki:MacPortsDevelopers Macports committer] dh has not been seen for [search:dh@macports.org over a year] and has a number of [query:owner=dh@macports.org&status=assigned&status=new&status=reopened&order=priority open tickets]. Derek, are you still interested in maintaining any of your ports? -- Ticket URL: <https://trac.macports.org/ticket/51239> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51655: Could not import numpy into python 2.7
by MacPorts 07 Jul '16

07 Jul '16

#51655: Could not import numpy into python 2.7 ------------------------------+-------------------------------- Reporter: mahajan.smriti@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: numpy, python | Port: py-numpy, python ------------------------------+-------------------------------- Following https://astrofrog.github.io/macports-python/ I installed Python, numpy, scipy and matplotlib and configured as directed in the link. But when I try to import numpy as a module I get the error "ImportError: No module named numpy". Instead if I try using py27-numpy, then I get a syntax error. While "which python returns "/Library/Frameworks/Python.framework/Versions/2.7/bin/python", "which numpy" and "which py27-numpy" give no output. I am new to python and would greatly appreciate any help with this installation. I am using OSX 10.9.8. Macports seems to have installed py27-numpy @1.9.0_0, py27-numpy @1.11.0_0+gfortran (active), python2_select @0.0_1 (active), python27 @2.7.8_1, python27 @2.7.11_2 (active), python34 @3.4.4_1 (active) among others. -- Ticket URL: <https://trac.macports.org/ticket/51655> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #49366: py27-numpy: raise ValueError, "insecure string pickle"
by MacPorts 07 Jul '16

07 Jul '16

#49366: py27-numpy: raise ValueError, "insecure string pickle" ----------------------+-------------------------- Reporter: jowens@… | Owner: dh,michaelld Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: py27-numpy ----------------------+-------------------------- OS X 10.11, MacPorts 2.3.4. I'm not quite sure what the error is here, but I believe it's underneath cythonize and is a insecure pickling problem. Googling is surprisingly uninformative. I've had this package installed for quite some time but have not seen this error until this version. -- Ticket URL: <https://trac.macports.org/ticket/49366> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #48723: Failed to activate py34-numpy
by MacPorts 07 Jul '16

07 Jul '16

#48723: Failed to activate py34-numpy --------------------------+-------------------------------- Reporter: resmi.raju@… | Owner: macports-tickets@… Type: defect | Status: new Priority: High | Milestone: MacPorts Future Component: ports | Version: 2.3.3 Keywords: numpy | Port: --------------------------+-------------------------------- Initially i install python 2.7. Then i got some errors while QuTip execution. So now am using python 3.4. While installation i got error with numpy {{{ Admins-iMac-2:bin admin$ sudo port install py34-matplotlib +latex ---> Computing dependencies for py34-matplotlib The following dependencies will be installed: py34-altgraph py34-macholib py34-modulegraph py34-numpy py34-parsing py34-py2app py34-pyobjc py34-pyobjc-cocoa py34-tkinter Continue? [Y/n]: y ---> Activating py34-numpy @1.9.2_2+gfortran Error: Failed to activate py34-numpy: Image error: /opt/local/Library/Frameworks/Python.framework/Versions/3.4/bin/f2py already exists and does not belong to a registered port. Unable to activate port py34-numpy. Use 'port -f activate py34-numpy' to force the activation. Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py-numpy/py34-numpy/main.log for details. Error: Follow http://guide.macports.org/#project.tickets to report a bug. Error: Processing of port py34-matplotlib failed Admins-iMac-2:bin admin$ }}} I use force activation command {{{ Admins-iMac-2:bin admin$ port -f activate py34-numpy ---> Computing dependencies for py34-numpy ---> Activating py34-numpy @1.9.2_2+gfortran Error: Failed to activate py34-numpy: mkdtemp failed: Permission denied Error: See /opt/local/var/macports/logs/_opt_local_var_macports_registry_portfiles_py34-numpy-1.9.2_2_6b74c7bf7c22f9194e0f2140b79aeb94a060ee88fa0ac76e3dba65deb6daf4b0-8512/py34-numpy/main.log for details. Warning: Failed to execute portfile from registry for py34-numpy @1.9.2_2+gfortran ---> Activating py34-numpy @1.9.2_2+gfortran Error: port activate failed: mkdtemp failed: Permission denied Admins-iMac-2:bin admin$ }}} Attached is the main.log file. -- Ticket URL: <https://trac.macports.org/ticket/48723> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47187: [py26-numpy]
by MacPorts 07 Jul '16

07 Jul '16

#47187: [py26-numpy] -----------------------+-------------------------------- Reporter: laforge@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: -----------------------+-------------------------------- sudo port upgrade outdated ---> Computing dependencies for py26-numpy ---> Fetching distfiles for py26-numpy Error: org.macports.fetch for port py26-numpy returned: You have selected the clang compiler (either directly or indirectly) and the +atlas variant, which does not match the clang compiler. Please ensure that both are compiled with the same one. Please see the log file for port py26-numpy for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_ports_python_py-numpy/py26-numpy/main.log Error: Unable to upgrade port: 1 -- Ticket URL: <https://trac.macports.org/ticket/47187> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51356: valgrind crashes/fails assertion
by MacPorts 07 Jul '16

07 Jul '16

#51356: valgrind crashes/fails assertion --------------------+-------------------------------- Reporter: uri@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: valgrind --------------------+-------------------------------- {{{ $ valgrind pkcs11-tool -t -l ==23584== Memcheck, a memory error detector ==23584== Copyright (C) 2002-2015, and GNU GPL'd, by Julian Seward et al. ==23584== Using Valgrind-3.11.0 and LibVEX; rerun with -h for copyright info ==23584== Command: pkcs11-tool -t -l ==23584== --23584-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option --23584-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option (repeated 2 times) --23584-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option (repeated 4 times) valgrind: m_syswrap/syswrap-amd64-darwin.c:507 (void wqthread_hijack(Addr, Addr, Addr, Addr, Int, Addr)): Assertion 'tst->os_state.pthread - magic_delta == self' failed. host stacktrace: ==23584== at 0x23803FC97: ??? ==23584== by 0x238040094: ??? ==23584== by 0x238040077: ??? ==23584== by 0x2380DE3E1: ??? sched status: running_tid=0 Thread 1: status = VgTs_WaitSys (lwpid 2567) ==23584== at 0x1007C8FAE: semaphore_wait_trap (in /usr/lib/system/libsystem_kernel.dylib) ==23584== by 0x1005D7CB1: _dispatch_semaphore_wait_slow (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x100986EA4: xpc_connection_send_message_with_reply_sync (in /usr/lib/system/libxpc.dylib) ==23584== by 0x1015877FD: transact (in /System/Library/Frameworks/PCSC.framework/Versions/A/PCSC) ==23584== by 0x1000806AC: pcsc_detect_readers (in /Library/OpenSC/lib/libopensc.4.dylib) ==23584== by 0x10003596D: sc_ctx_detect_readers (in /Library/OpenSC/lib/libopensc.4.dylib) ==23584== by 0x100035D80: sc_context_create (in /Library/OpenSC/lib/libopensc.4.dylib) ==23584== by 0x10154FBC4: C_Initialize (in /Library/OpenSC/lib/opensc- pkcs11.so) ==23584== by 0x100001CAF: main (in /usr/local/bin/pkcs11-tool) Thread 2: status = VgTs_WaitSys (lwpid 3587) ==23584== at 0x1007CF5E2: __workq_kernreturn (in /usr/lib/system/libsystem_kernel.dylib) ==23584== by 0x2380DE3E1: ??? ==23584== by 0x2382001AF: ??? ==23584== by 0x70000311EDAF: ??? ==23584== by 0x70000000BABF: ??? Thread 3: status = VgTs_WaitSys (lwpid 6147) ==23584== at 0x1007C8F72: mach_msg_trap (in /usr/lib/system/libsystem_kernel.dylib) ==23584== by 0x1007C83B2: mach_msg (in /usr/lib/system/libsystem_kernel.dylib) ==23584== by 0x1007BE03B: _kernelrpc_mach_port_request_notification (in /usr/lib/system/libsystem_kernel.dylib) ==23584== by 0x1005D4FCC: _dispatch_kevent_mach_notify_resume (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D51BC: _dispatch_kevent_unregister (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D3FD1: _dispatch_mach_msg_send (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D3A20: _dispatch_mach_msg_send (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D4B23: _dispatch_mach_send_drain (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D3458: _dispatch_mach_invoke (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D11FF: _dispatch_queue_drain (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D21DE: _dispatch_mgr_queue_drain (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D20B9: _dispatch_mgr_invoke (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D1DCC: _dispatch_mgr_thread (in /usr/lib/system/libdispatch.dylib) Note: see also the FAQ in the source distribution. It contains workarounds to several common problems. In particular, if Valgrind aborted or crashed after identifying problems in your program, there's a good chance that fixing those problems will prevent Valgrind aborting or crashing, especially if it happened in m_mallocfree.c. If that doesn't help, please report this bug to: www.valgrind.org In the bug report, send all the above text, the valgrind version, and what OS and version you are using. Thanks. $ }}} Mac OS X 10.11.4. Xcode-7.3.1. The program that the above failure occurs is "pkcs11-tool" from [https://Github.com/OpenSC/OpenSC.git] master branch. Bug report to [www.valgrind.org] has been submitted: [https://bugs.kde.org/show_bug.cgi?id=362920] Help and fix would be appreciated. -- Ticket URL: <https://trac.macports.org/ticket/51356> MacPorts <https://www.macports.org/> Ports system for OS X

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