July 2016 - macports-tickets - lists.macosforge.org

[MacPorts] #48723: Failed to activate py34-numpy
by MacPorts 07 Jul '16

07 Jul '16

#48723: Failed to activate py34-numpy --------------------------+-------------------------------- Reporter: resmi.raju@… | Owner: macports-tickets@… Type: defect | Status: new Priority: High | Milestone: MacPorts Future Component: ports | Version: 2.3.3 Keywords: numpy | Port: --------------------------+-------------------------------- Initially i install python 2.7. Then i got some errors while QuTip execution. So now am using python 3.4. While installation i got error with numpy {{{ Admins-iMac-2:bin admin$ sudo port install py34-matplotlib +latex ---> Computing dependencies for py34-matplotlib The following dependencies will be installed: py34-altgraph py34-macholib py34-modulegraph py34-numpy py34-parsing py34-py2app py34-pyobjc py34-pyobjc-cocoa py34-tkinter Continue? [Y/n]: y ---> Activating py34-numpy @1.9.2_2+gfortran Error: Failed to activate py34-numpy: Image error: /opt/local/Library/Frameworks/Python.framework/Versions/3.4/bin/f2py already exists and does not belong to a registered port. Unable to activate port py34-numpy. Use 'port -f activate py34-numpy' to force the activation. Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py-numpy/py34-numpy/main.log for details. Error: Follow http://guide.macports.org/#project.tickets to report a bug. Error: Processing of port py34-matplotlib failed Admins-iMac-2:bin admin$ }}} I use force activation command {{{ Admins-iMac-2:bin admin$ port -f activate py34-numpy ---> Computing dependencies for py34-numpy ---> Activating py34-numpy @1.9.2_2+gfortran Error: Failed to activate py34-numpy: mkdtemp failed: Permission denied Error: See /opt/local/var/macports/logs/_opt_local_var_macports_registry_portfiles_py34-numpy-1.9.2_2_6b74c7bf7c22f9194e0f2140b79aeb94a060ee88fa0ac76e3dba65deb6daf4b0-8512/py34-numpy/main.log for details. Warning: Failed to execute portfile from registry for py34-numpy @1.9.2_2+gfortran ---> Activating py34-numpy @1.9.2_2+gfortran Error: port activate failed: mkdtemp failed: Permission denied Admins-iMac-2:bin admin$ }}} Attached is the main.log file. -- Ticket URL: <https://trac.macports.org/ticket/48723> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #47187: [py26-numpy]
by MacPorts 07 Jul '16

07 Jul '16

#47187: [py26-numpy] -----------------------+-------------------------------- Reporter: laforge@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: -----------------------+-------------------------------- sudo port upgrade outdated ---> Computing dependencies for py26-numpy ---> Fetching distfiles for py26-numpy Error: org.macports.fetch for port py26-numpy returned: You have selected the clang compiler (either directly or indirectly) and the +atlas variant, which does not match the clang compiler. Please ensure that both are compiled with the same one. Please see the log file for port py26-numpy for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_ports_python_py-numpy/py26-numpy/main.log Error: Unable to upgrade port: 1 -- Ticket URL: <https://trac.macports.org/ticket/47187> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #41766: py27-numpy @1.8.0_2 +atlas +gcc48 compile error - build failure
by MacPorts 07 Jul '16

07 Jul '16

#41766: py27-numpy @1.8.0_2 +atlas +gcc48 compile error - build failure --------------------------------+------------------------- Reporter: freezingmariner@… | Owner: michaelld@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.1 Resolution: | Keywords: Port: py-numpy | --------------------------------+------------------------- Changes (by mf2k@…): * owner: dh@… => michaelld@… * cc: michaelld@… (removed) Comment: dh has retired. See #51239. -- Ticket URL: <https://trac.macports.org/ticket/41766#comment:6> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #37340: py32-numpy (but other version also?) does not link against libgomp when needed
by MacPorts 07 Jul '16

07 Jul '16

#37340: py32-numpy (but other version also?) does not link against libgomp when needed -----------------------+-------------------------- Reporter: vince@… | Owner: michaelld@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Resolution: | Keywords: OpenMP numpy Port: py-numpy | -----------------------+-------------------------- Changes (by mf2k@…): * cc: michaelld@… (removed) * owner: dh@… => michaelld@… Comment: dh has retired. See #51239. -- Ticket URL: <https://trac.macports.org/ticket/37340#comment:11> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #31419: py27-numpy: multiarray.so: wrong architecture
by MacPorts 07 Jul '16

07 Jul '16

#31419: py27-numpy: multiarray.so: wrong architecture -------------------------------+------------------------- Reporter: macporter90210@… | Owner: michaelld@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Resolution: | Keywords: Port: py-numpy | -------------------------------+------------------------- Changes (by mf2k@…): * cc: michaelld@… (removed) * owner: dh@… => michaelld@… Comment: dh has retired. See #51239. -- Ticket URL: <https://trac.macports.org/ticket/31419#comment:24> MacPorts <https://www.macports.org/> Ports system for OS X

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Re: [MacPorts] #31310: py-numpy: +atlas +gcc44 +universal fixes, tested with py27-numpy 1.6.1_0 on ppc/ppc64
by MacPorts 07 Jul '16

07 Jul '16

#31310: py-numpy: +atlas +gcc44 +universal fixes, tested with py27-numpy 1.6.1_0 on ppc/ppc64 -----------------------+------------------------- Reporter: ccorn@… | Owner: michaelld@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Resolution: | Keywords: haspatch Port: py-numpy | -----------------------+------------------------- Changes (by mf2k@…): * cc: michaelld@… (removed) * owner: dh@… => michaelld@… Comment: dh has retired. See #51239. -- Ticket URL: <https://trac.macports.org/ticket/31310#comment:9> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51744: valgrind : Undefined symbols; "___divti3", referenced from: :info:build ___muloti4 in libclang_rt.osx.a(muloti4.o)
by MacPorts 07 Jul '16

07 Jul '16

#51744: valgrind : Undefined symbols; "___divti3", referenced from: :info:build ___muloti4 in libclang_rt.osx.a(muloti4.o) ----------------------+-------------------------------- Reporter: simon@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: valgrind | Port: valgrind ----------------------+-------------------------------- Hello all — I am having trouble installing valgrind on Mac OS X 10.10.5 (Yosemite). It appears to be associated with an undefined symbol in libclang. Any thoughts? Simon :info:build mv -f m_ume/.deps/libcoregrind_amd64_darwin_a-macho.Tpo m_ume/.deps/libcoregrind_amd64_darwin_a-macho.Po :info:build Undefined symbols for architecture x86_64: :info:build "___divti3", referenced from: :info:build ___muloti4 in libclang_rt.osx.a(muloti4.o) :info:build ld: symbol(s) not found for architecture x86_64 :info:build clang: error: linker command failed with exit code 1 (use -v to see invocation) :info:build make[3]: *** [vgpreload_core-amd64-darwin.so] Error 1 :info:build make[3]: *** Waiting for unfinished jobs.... :info:build mv -f m_mach/.deps/libcoregrind_amd64_darwin_a-mach_vmUser.Tpo m_mach/.deps/libcoregrind_amd64_darwin_a-mach_vmUser.Po :info:build mv -f m_mach/.deps/libcoregrind_amd64_darwin_a-vm_mapUser.Tpo m_mach/.deps/libcoregrind_amd64_darwin_a-vm_mapUser.Po :info:build mv -f m_mach/.deps/libcoregrind_amd64_darwin_a- thread_actUser.Tpo m_mach/.deps/libcoregrind_amd64_darwin_a- thread_actUser.Po :info:build mv -f m_mach/.deps/libcoregrind_amd64_darwin_a-taskUser.Tpo m_mach/.deps/libcoregrind_amd64_darwin_a-taskUser.Po :info:build mv -f m_syswrap/.deps/libcoregrind_amd64_darwin_a-syswrap- generic.Tpo m_syswrap/.deps/libcoregrind_amd64_darwin_a-syswrap-generic.Po :info:build mv -f m_syswrap/.deps/libcoregrind_amd64_darwin_a-syswrap- darwin.Tpo m_syswrap/.deps/libcoregrind_amd64_darwin_a-syswrap-darwin.Po :info:build make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_valgrind/valgrind/work/valgrind-3.11.0/coregrind' :info:build make[2]: *** [all] Error 2 :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_valgrind/valgrind/work/valgrind-3.11.0/coregrind' :info:build make[1]: *** [all-recursive] Error 1 :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_valgrind/valgrind/work/valgrind-3.11.0' :info:build make: *** [all] Error 2 :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_valgrind/valgrind/work/valgrind-3.11.0' :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_valgrind/valgrind/work/valgrind-3.11.0" && /usr/bin/make -j8 -w all :info:build Exit code: 2 :error:build org.macports.build for port valgrind returned: command execution failed :debug:build Error code: CHILDSTATUS 69467 2 :debug:build Backtrace: command execution failed while executing "system -nice 0 $fullcmdstring" ("eval" body line 1) invoked from within "eval system $notty $nice \$fullcmdstring" invoked from within "command_exec build" (procedure "portbuild::build_main" line 8) invoked from within "portbuild::build_main org.macports.build" ("eval" body line 1) invoked from within "eval $procedure $targetname" :info:build Warning: targets not executed for valgrind: org.macports.activate org.macports.build org.macports.destroot org.macports.install :notice:build Please see the log file for port valgrind for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_valgrind/valgrind/main.log ayerie:SFIHMM simon$ sudo port install valgrind ---> Computing dependencies for valgrind ---> Building valgrind Error: org.macports.build for port valgrind returned: command execution failed Please see the log file for port valgrind for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_valgrind/valgrind/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port valgrind failed -- Ticket URL: <https://trac.macports.org/ticket/51744> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51787: libarchive @3.2.1 Configuration error
by MacPorts 07 Jul '16

07 Jul '16

#51787: libarchive @3.2.1 Configuration error -----------------------------+-------------------------------- Reporter: kiernan.hager@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: libarchive -----------------------------+-------------------------------- OSX 10.11.5 Xcode 7.3.1 -- Ticket URL: <https://trac.macports.org/ticket/51787> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51790: root6 : update to 6.06.06
by MacPorts 07 Jul '16

07 Jul '16

#51790: root6 : update to 6.06.06 ---------------------------------+-------------------------------- Reporter: jonesc@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: haspatch maintainer | Port: root6 ---------------------------------+-------------------------------- Simple update to the latest version. Also adds a new gcc6 variant, and made it the default. Only used for a fortran compiler. -- Ticket URL: <https://trac.macports.org/ticket/51790> MacPorts <https://www.macports.org/> Ports system for OS X

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[MacPorts] #51356: valgrind crashes/fails assertion
by MacPorts 07 Jul '16

07 Jul '16

#51356: valgrind crashes/fails assertion --------------------+-------------------------------- Reporter: uri@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: valgrind --------------------+-------------------------------- {{{ $ valgrind pkcs11-tool -t -l ==23584== Memcheck, a memory error detector ==23584== Copyright (C) 2002-2015, and GNU GPL'd, by Julian Seward et al. ==23584== Using Valgrind-3.11.0 and LibVEX; rerun with -h for copyright info ==23584== Command: pkcs11-tool -t -l ==23584== --23584-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option --23584-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option (repeated 2 times) --23584-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option (repeated 4 times) valgrind: m_syswrap/syswrap-amd64-darwin.c:507 (void wqthread_hijack(Addr, Addr, Addr, Addr, Int, Addr)): Assertion 'tst->os_state.pthread - magic_delta == self' failed. host stacktrace: ==23584== at 0x23803FC97: ??? ==23584== by 0x238040094: ??? ==23584== by 0x238040077: ??? ==23584== by 0x2380DE3E1: ??? sched status: running_tid=0 Thread 1: status = VgTs_WaitSys (lwpid 2567) ==23584== at 0x1007C8FAE: semaphore_wait_trap (in /usr/lib/system/libsystem_kernel.dylib) ==23584== by 0x1005D7CB1: _dispatch_semaphore_wait_slow (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x100986EA4: xpc_connection_send_message_with_reply_sync (in /usr/lib/system/libxpc.dylib) ==23584== by 0x1015877FD: transact (in /System/Library/Frameworks/PCSC.framework/Versions/A/PCSC) ==23584== by 0x1000806AC: pcsc_detect_readers (in /Library/OpenSC/lib/libopensc.4.dylib) ==23584== by 0x10003596D: sc_ctx_detect_readers (in /Library/OpenSC/lib/libopensc.4.dylib) ==23584== by 0x100035D80: sc_context_create (in /Library/OpenSC/lib/libopensc.4.dylib) ==23584== by 0x10154FBC4: C_Initialize (in /Library/OpenSC/lib/opensc- pkcs11.so) ==23584== by 0x100001CAF: main (in /usr/local/bin/pkcs11-tool) Thread 2: status = VgTs_WaitSys (lwpid 3587) ==23584== at 0x1007CF5E2: __workq_kernreturn (in /usr/lib/system/libsystem_kernel.dylib) ==23584== by 0x2380DE3E1: ??? ==23584== by 0x2382001AF: ??? ==23584== by 0x70000311EDAF: ??? ==23584== by 0x70000000BABF: ??? Thread 3: status = VgTs_WaitSys (lwpid 6147) ==23584== at 0x1007C8F72: mach_msg_trap (in /usr/lib/system/libsystem_kernel.dylib) ==23584== by 0x1007C83B2: mach_msg (in /usr/lib/system/libsystem_kernel.dylib) ==23584== by 0x1007BE03B: _kernelrpc_mach_port_request_notification (in /usr/lib/system/libsystem_kernel.dylib) ==23584== by 0x1005D4FCC: _dispatch_kevent_mach_notify_resume (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D51BC: _dispatch_kevent_unregister (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D3FD1: _dispatch_mach_msg_send (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D3A20: _dispatch_mach_msg_send (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D4B23: _dispatch_mach_send_drain (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D3458: _dispatch_mach_invoke (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D11FF: _dispatch_queue_drain (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D21DE: _dispatch_mgr_queue_drain (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D20B9: _dispatch_mgr_invoke (in /usr/lib/system/libdispatch.dylib) ==23584== by 0x1005D1DCC: _dispatch_mgr_thread (in /usr/lib/system/libdispatch.dylib) Note: see also the FAQ in the source distribution. It contains workarounds to several common problems. In particular, if Valgrind aborted or crashed after identifying problems in your program, there's a good chance that fixing those problems will prevent Valgrind aborting or crashing, especially if it happened in m_mallocfree.c. If that doesn't help, please report this bug to: www.valgrind.org In the bug report, send all the above text, the valgrind version, and what OS and version you are using. Thanks. $ }}} Mac OS X 10.11.4. Xcode-7.3.1. The program that the above failure occurs is "pkcs11-tool" from [https://Github.com/OpenSC/OpenSC.git] master branch. Bug report to [www.valgrind.org] has been submitted: [https://bugs.kde.org/show_bug.cgi?id=362920] Help and fix would be appreciated. -- Ticket URL: <https://trac.macports.org/ticket/51356> MacPorts <https://www.macports.org/> Ports system for OS X

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