[MacPorts] #21584: octave-3.2.2 -- build failure -- likely arpack issue

23 Sep 2009

      #21584: octave-3.2.2 -- build failure -- likely arpack issue
---------------------------------+------------------------------------------
 Reporter:  rkcrockett@…         |       Owner:  macports-tickets@…                   
     Type:  defect               |      Status:  new                                  
 Priority:  Normal               |   Milestone:                                       
Component:  ports                |     Version:  1.8.0                                
 Keywords:  octave arpack gcc43  |        Port:                                       
---------------------------------+------------------------------------------
 Building octave +gcc43 from a fresh macports install, 10.6.1, I get:

 --->  Building octave
 Error: Target org.macports.build returned: shell command " cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_octave/work/octave-3.2.2"
 && /usr/bin/make -j2 all " returned error 2
 Command output: /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader
 ../src/octave -L/opt/local/lib -o convhulln.oct pic/convhulln.o
 -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod
 -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse  -lfftw3
 -lfftw3f -lqrupdate -larpack -lreadline  -lncurses -framework Accelerate
 -lhdf5 -lz -lm  -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL
 -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran -lqhull
 /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave
 -L/opt/local/lib -o daspk.oct pic/daspk.o -L../libcruft -lcruft
 -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd
 -lcamd -lcolamd -lccolamd -lcxsparse  -lfftw3 -lfftw3f -lqrupdate -larpack
 -lreadline  -lncurses -framework Accelerate -lhdf5 -lz -lm
 -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran
 /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave
 -L/opt/local/lib -o dasrt.oct pic/dasrt.o -L../libcruft -lcruft
 -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd
 -lcamd -lcolamd -lccolamd -lcxsparse  -lfftw3 -lfftw3f -lqrupdate -larpack
 -lreadline  -lncurses -framework Accelerate -lhdf5 -lz -lm
 -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran
 /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave
 -L/opt/local/lib -o dassl.oct pic/dassl.o -L../libcruft -lcruft
 -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd
 -lcamd -lcolamd -lccolamd -lcxsparse  -lfftw3 -lfftw3f -lqrupdate -larpack
 -lreadline  -lncurses -framework Accelerate -lhdf5 -lz -lm
 -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran
 /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave
 -L/opt/local/lib -o det.oct pic/det.o -L../libcruft -lcruft -L../liboctave
 -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd
 -lccolamd -lcxsparse  -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline
 -lncurses -framework Accelerate -lhdf5 -lz -lm  -L/opt/local/lib
 -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran
 /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave
 -L/opt/local/lib -o dispatch.oct pic/dispatch.o -L../libcruft -lcruft
 -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd
 -lcamd -lcolamd -lccolamd -lcxsparse  -lfftw3 -lfftw3f -lqrupdate -larpack
 -lreadline  -lncurses -framework Accelerate -lhdf5 -lz -lm
 -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran
 /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave
 -L/opt/local/lib -o dlmread.oct pic/dlmread.o -L../libcruft -lcruft
 -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd
 -lcamd -lcolamd -lccolamd -lcxsparse  -lfftw3 -lfftw3f -lqrupdate -larpack
 -lreadline  -lncurses -framework Accelerate -lhdf5 -lz -lm
 -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran
 /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave
 -L/opt/local/lib -o dmperm.oct pic/dmperm.o -L../libcruft -lcruft
 -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd
 -lcamd -lcolamd -lccolamd -lcxsparse  -lfftw3 -lfftw3f -lqrupdate -larpack
 -lreadline  -lncurses -framework Accelerate -lhdf5 -lz -lm
 -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran
 /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave
 -L/opt/local/lib -o eig.oct pic/eig.o -L../libcruft -lcruft -L../liboctave
 -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd
 -lccolamd -lcxsparse  -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline
 -lncurses -framework Accelerate -lhdf5 -lz -lm  -L/opt/local/lib
 -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran
 /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave
 -L/opt/local/lib -o eigs.oct pic/eigs.o -L../libcruft -lcruft
 -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd
 -lcamd -lcolamd -lccolamd -lcxsparse  -lfftw3 -lfftw3f -lqrupdate -larpack
 -lreadline  -lncurses -framework Accelerate -lhdf5 -lz -lm
 -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran -larpack
 /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave
 -L/opt/local/lib -o fft.oct pic/fft.o -L../libcruft -lcruft -L../liboctave
 -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd
 -lccolamd -lcxsparse  -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline
 -lncurses -framework Accelerate -lhdf5 -lz -lm  -L/opt/local/lib
 -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4
 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz
 -lm -lfreetype -lgfortranbegin -lgfortran
 Undefined symbols:
   "_znaupd_", referenced from:
       EigsComplexNonSymmetricFunc(ComplexColumnVector
 (*)(ComplexColumnVector const&, int&), int, std::basic_string<char,
 std::char_traits<char>, std::allocator<char> > const&,
 std::complex<double>, int, int, int&, ComplexMatrix&,
 ComplexColumnVector&, ComplexColumnVector&, std::basic_ostream<char,
 std::char_traits<char> >&, double, int, bool, int, int) in eigs.o
       int EigsComplexNonSymmetricMatrix<ComplexMatrix>(ComplexMatrix
 const&, std::basic_string<char, std::char_traits<char>,
 std::allocator<char> >, int, int, int&, ComplexMatrix&,
 ComplexColumnVector&, ComplexMatrix const&, ColumnVector&,
 ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&,
 double, int, bool, int, int) in eigs.o
       int
 EigsComplexNonSymmetricMatrix<SparseComplexMatrix>(SparseComplexMatrix
 const&, std::basic_string<char, std::char_traits<char>,
 std::allocator<char> >, int, int, int&, ComplexMatrix&,
 ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&,
 ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&,
 double, int, bool, int, int) in eigs.o
       int
 EigsComplexNonSymmetricMatrixShift<SparseComplexMatrix>(SparseComplexMatrix
 const&, std::complex<double>, int, int, int&, ComplexMatrix&,
 ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&,
 ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&,
 double, int, bool, int, int) in eigs.o
       int EigsComplexNonSymmetricMatrixShift<ComplexMatrix>(ComplexMatrix
 const&, std::complex<double>, int, int, int&, ComplexMatrix&,
 ComplexColumnVector&, ComplexMatrix const&, ColumnVector&,
 ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&,
 double, int, bool, int, int) in eigs.o
   "_zneupd_", referenced from:
       EigsComplexNonSymmetricFunc(ComplexColumnVector
 (*)(ComplexColumnVector const&, int&), int, std::basic_string<char,
 std::char_traits<char>, std::allocator<char> > const&,
 std::complex<double>, int, int, int&, ComplexMatrix&,
 ComplexColumnVector&, ComplexColumnVector&, std::basic_ostream<char,
 std::char_traits<char> >&, double, int, bool, int, int) in eigs.o
       int EigsComplexNonSymmetricMatrix<ComplexMatrix>(ComplexMatrix
 const&, std::basic_string<char, std::char_traits<char>,
 std::allocator<char> >, int, int, int&, ComplexMatrix&,
 ComplexColumnVector&, ComplexMatrix const&, ColumnVector&,
 ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&,
 double, int, bool, int, int) in eigs.o
       int
 EigsComplexNonSymmetricMatrix<SparseComplexMatrix>(SparseComplexMatrix
 const&, std::basic_string<char, std::char_traits<char>,
 std::allocator<char> >, int, int, int&, ComplexMatrix&,
 ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&,
 ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&,
 double, int, bool, int, int) in eigs.o
       int
 EigsComplexNonSymmetricMatrixShift<SparseComplexMatrix>(SparseComplexMatrix
 const&, std::complex<double>, int, int, int&, ComplexMatrix&,
 ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&,
 ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&,
 double, int, bool, int, int) in eigs.o
       int EigsComplexNonSymmetricMatrixShift<ComplexMatrix>(ComplexMatrix
 const&, std::complex<double>, int, int, int&, ComplexMatrix&,
 ComplexColumnVector&, ComplexMatrix const&, ColumnVector&,
 ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&,
 double, int, bool, int, int) in eigs.o
 ld: symbol(s) not found
 collect2: ld returned 1 exit status
 make[2]: *** [eigs.oct] Error 1
 make[2]: *** Waiting for unfinished jobs....
 make[1]: *** [src] Error 2
 make: *** [all] Error 2

 Error: Status 1 encountered during processing.

-- 
Ticket URL: <http://trac.macports.org/ticket/21584>
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