[MacPorts] #45195: ncarg @6.2.1 +gcc49 Compile Error (includes +mpich) and also cannot find "_HE5_EHHEisHE5"

28 Sep 2014

      #45195: ncarg @6.2.1 +gcc49 Compile Error (includes +mpich) and also cannot find
"_HE5_EHHEisHE5"
--------------------------------+--------------------------------
 Reporter:  William.Capehart@…  |      Owner:  macports-tickets@…
     Type:  defect              |     Status:  new
 Priority:  Normal              |  Milestone:
Component:  ports               |    Version:  2.3.1
 Keywords:                      |       Port:  ncarg
--------------------------------+--------------------------------
 In updating NCAR Command Language (ncarg) I am not able to complete the
 build:  The error is

 {{{
 :info:build mpicc-mpich-gcc49 -fPIC -ansi -D_DARWIN_C_SOURCE  -Os
 -I../../.././include -I/opt/local/include/freetype2
 -I/opt/local/include/udunits2 -I/opt/local/lib/hdfeos5/include
 -I/opt/local/include  -DDarwin -DMAJOR=13
 -DBuildHDFEOS  -DBuildHDF4                      -DBuildHDFEOS5
 -DBuildHDF5                     -DBuildGRIB2 -D__64BIT__ -DBuildGDAL
 -DUSE_NETCDF4_FEATURES
 -DSYSV -D_XOPEN_SOURCE -DByteSwapped -D__UNIXOS2__ -D__JIRA1530__
 -DNeedFuncProto    -c -o Ncl.o Ncl.c
 :info:build mpicc-mpich-gcc49 -fPIC -ansi -D_DARWIN_C_SOURCE  -Os     -o
 ncl Ncl.o io.o NclHLUObj.o NclApi.o guiFuncs.o NclDriver.o
 scanner.o parser.o MathFuncs.o NclTypedouble.o NclTypefloat.o
 NclTypeint.o NclTypelogical.o                   NclTypelong.o NclTypeobj.o
 NclTypeshort.o NclTypestring.o                          NclTypeint64.o
 NclTypeuint64.o                          NclTypeubyte.o
 NclTypeushort.o NclTypeuint.o NclTypeulong.o
 NclTypebyte.o NclTypechar.o TypeSupport.o
 NclMultiDValData.o AddFileFormats.o AttSupport.o DataSupport.o
 FileSupport.o Formats.o GetGrids.o
 AdvancedFileSupport.o                   NclAdvancedFile.o
 NclAdvancedGroup.o                    InitData.o Memory.o NclAtt.o
 NclCCM.o                   NclCoordVar.o NclData.o NclGroup.o NclFile.o
 NclFileVar.o                       NclGRIB.o NclMultiDValnclfileData.o
 NclNetCdf.o NclOneDValCoordData.o NclType.o
 NclTypelist.o NclVar.o VarSupport.o                     ctoiee.o date.o
 qu2reg3.o rowina3.o scm0.o ncepcode.o                   NclHDFEOS.o
 NclHDF.o                    NclHDFEOS5.o NclNewHDFEOS5.o NclNewHDF5.o
 NclHDF5.o h5reader.o h5writer.o
 NclNetCDF4.o                    NclGRIB2.o NclOGR.o NclAdvancedOGR.o
 AddBuiltIns.o AddHLUObjs.o                         AddIntrinsics.o
 Execute.o                       Machine.o OpsFuncs.o SrcTree.o
 Symbol.o Translate.o                    NclHLUVar.o HLUSupport.o
 NclMultiDValHLUObjData.o                        BuiltInSupport.o
 BuiltInFuncs.o                         javaAddProto.o javaAddFuncs.o
 userAddProto.o userAddFuncs.o                   HLUFunctions.o yywrap.o
 craybin.o                       complete.o editline.o sysunix.o
 ListSupport.o                   NclList.o NclMultiDVallistData.o
 NclProf.o NclTime.o fortranio.o  -L../../.././ni/src/lib/nfp -lnfp
 -L../../.././ni/src/lib/nfpfort -lnfpfort -L../../.././ni/src/lib/hlu
 -lhlu -L../../.././ncarg2d/src/libncarg -lncarg
 -L../../.././ncarg2d/src/libncarg_gks -lncarg_gks
 -L../../.././common/src/libncarg_c -lncarg_c -L../../.././ngmath/src/lib
 -lngmath
 -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/destroot/opt/local/lib
 -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/ncl_ncarg-6.2.1
 -L/opt/local/lib -L/opt/local/lib/hdfeos5/lib -L/opt/local/lib -lnetcdf
 -lhe5_hdfeos -lGctp -lhdf5 -lhdf5_hl -lhdf5 -lhdfeos -lGctp -lmfhdf -ldf
 -ljpeg -lz -lhdf5_hl -lhdf5 -lz -lgdal -lproj -ljpeg   -ludunits2 -lexpat
 -lv5d -lgrib2c -ljasper -lpng -lz -ljpeg -lpng -lz -lcairo -lfontconfig
 -lpixman-1 -lfreetype -lexpat -lpng -lz -lpthread -lXrender -lbz2
 -L../../.././external/sphere3.1_dp
 ../../.././external/sphere3.1_dp/libsphere3.1_dp.a
 -L../../.././external/fftpack5_dp
 ../../.././external/fftpack5_dp/libfftpack5_dp.a
 -L../../.././external/lapack ../../.././external/lapack/liblapack_ncl.a
 -L../../.././external/blas ../../.././external/blas/libblas_ncl.a -lXpm
 -lX11 -lXext -lgfortran -lgomp -lquadmath -lm  -ldl
 :info:build ld: warning: directory not found for option
 '-L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/destroot/opt/local/lib'
 :info:build Undefined symbols for architecture x86_64:
 :info:build   "_HE5_EHHEisHE5", referenced from:
 :info:build       import-atom in libhe5_hdfeos.dylib
 :info:build ld: symbol(s) not found for architecture x86_64
 :info:build collect2: error: ld returned 1 exit status
 :info:build make[4]: *** [ncl] Error 1
 :info:build make[4]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_ncarg/ncarg/work/ncl_ncarg-6.2.1/ni/src/ncl'

 }}}

 Also since my netcdf, hdf4, hdf5 and hdfeos5 are enabled for mpich, it is
 also building with mpich.  I am not sure that that is the problem.

-- 
Ticket URL: <https://trac.macports.org/ticket/45195>
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