#39774: py-openbabel install failure ---------------------------+-------------------------------- Reporter: ba306@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: py-openbabel | ---------------------------+-------------------------------- Changes (by ciserlohn@…): * keywords: python => * port: => py-openbabel Old description:
Hi, Trying to install python bindings for openbabel. Mac lion. Have been working on this for 4 days now! most recent error:
version:1 :debug:main Executing org.macports.main (openbabel) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 501 :debug:main euid changed to: 502 :debug:main Skipping completed org.macports.archivefetch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.fetch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Wed Jul 17 12:14:16 BST 2013 :notice:configure ---> Configuring openbabel :debug:configure Using compiler 'Mac OS X clang' :debug:configure Executing proc-pre-org.macports.configure-configure-0 :debug:configure Executing org.macports.configure (openbabel) :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2 -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2 -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.7' CXX='/usr/bin/clang++' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64' OBJC='/usr/bin/clang' FCFLAGS='-pipe -O2 -m64' INSTALL='/usr/bin/install -c' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64' CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang' :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET=""' :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET="" :info:configure -- Using included inchi library. :info:configure -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) :info:configure CMake Error at /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:97 (message): :info:configure Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) :info:configure Call Stack (most recent call first): :info:configure /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:291 (_FPHSA_FAILURE_MESSAGE) :info:configure /opt/local/share/cmake-2.8/Modules/FindPkgConfig.cmake:102 (find_package_handle_standard_args) :info:configure cmake/modules/FindCairo.cmake:23 (find_package) :info:configure CMakeLists.txt:404 (find_package) :info:configure :info:configure :info:configure -- Configuring incomplete, errors occurred! :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET="" :info:configure Exit code: 1 :error:configure org.macports.configure for port openbabel returned: configure failure: command execution failed :debug:configure Error code: NONE :debug:configure Backtrace: configure failure: command execution failed while executing "$procedure $targetname" :info:configure Warning: targets not executed for openbabel: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install :error:configure Failed to install openbabel :debug:configure couldn't open "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex": no such file or directory while executing "open [file join $dir tclIndex]" :notice:configure Please see the log file for port openbabel for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/main.log
New description: Hi, Trying to install python bindings for openbabel. Mac lion. Have been working on this for 4 days now! most recent error: {{{ version:1 :debug:main Executing org.macports.main (openbabel) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 501 :debug:main euid changed to: 502 :debug:main Skipping completed org.macports.archivefetch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.fetch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Wed Jul 17 12:14:16 BST 2013 :notice:configure ---> Configuring openbabel :debug:configure Using compiler 'Mac OS X clang' :debug:configure Executing proc-pre-org.macports.configure-configure-0 :debug:configure Executing org.macports.configure (openbabel) :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2 -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2 -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.7' CXX='/usr/bin/clang++' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64' OBJC='/usr/bin/clang' FCFLAGS='-pipe -O2 -m64' INSTALL='/usr/bin/install -c' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64' CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang' :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET=""' :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET="" :info:configure -- Using included inchi library. :info:configure -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) :info:configure CMake Error at /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:97 (message): :info:configure Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) :info:configure Call Stack (most recent call first): :info:configure /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:291 (_FPHSA_FAILURE_MESSAGE) :info:configure /opt/local/share/cmake-2.8/Modules/FindPkgConfig.cmake:102 (find_package_handle_standard_args) :info:configure cmake/modules/FindCairo.cmake:23 (find_package) :info:configure CMakeLists.txt:404 (find_package) :info:configure :info:configure :info:configure -- Configuring incomplete, errors occurred! :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET="" :info:configure Exit code: 1 :error:configure org.macports.configure for port openbabel returned: configure failure: command execution failed :debug:configure Error code: NONE :debug:configure Backtrace: configure failure: command execution failed while executing "$procedure $targetname" :info:configure Warning: targets not executed for openbabel: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install :error:configure Failed to install openbabel :debug:configure couldn't open "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex": no such file or directory while executing "open [file join $dir tclIndex]" :notice:configure Please see the log file for port openbabel for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/main.log }}} -- Comment: This was not a clean attempt. Please try again: {{{ $ sudo port selfupdate $ sudo port install py-openbabel }}} and attach the log file if it fails. In the future please remember to use WikiFormatting and fill in the port field. -- Ticket URL: <https://trac.macports.org/ticket/39774#comment:1> MacPorts <http://www.macports.org/> Ports system for OS X