#50218: Error: Failed to install doxygen -----------------------+-------------------- Reporter: justin@… | Owner: css@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: invalid | Keywords: Port: doxygen | -----------------------+-------------------- Comment (by oscar@…): You're probably right. I'm afraid I'm not comfortable enough around this to be of much help. I have not tried repairing disk permissions. While figuring out how I found the following ([https://support.apple.com/en-us/HT201560 link]), don't know if it helps. Beginning with OS X El Capitan, system file permissions are automatically protected. It's no longer necessary to verify or repair permissions with Disk Utility. Owner is set to `root` and group to `wheel`. Read access for both `pthread.h` and `errno.h`. (`pthread.h` also have write access for owner). Output from commands: {{{ MVBook:tmp osed$ sudo -u macports /usr/bin/clang++ -v -I/opt/local/include -pipe -Os -stdlib=libc++ -DICONV_COMPILES -arch x86_64 -mmacosx-version- min=10.11 -o /dev/null -c /tmp/test.cpp Apple LLVM version 7.0.2 (clang-700.1.81) Target: x86_64-apple-darwin15.2.0 Thread model: posix "/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang" -cc1 -triple x86_64-apple-macosx10.11.0 -Wdeprecated-objc-isa-usage -Werror=deprecated-objc-isa-usage -emit-obj -disable-free -disable-llvm- verifier -main-file-name test.cpp -mrelocation-model pic -pic-level 2 -mthread-model posix -mdisable-fp-elim -masm-verbose -munwind-tables -target-cpu core2 -target-linker-version 253.9 -v -dwarf-column-info -coverage-file /dev/null -resource-dir /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/7.0.2 -D ICONV_COMPILES -I /opt/local/include -stdlib=libc++ -Os -fdeprecated- macro -fdebug-compilation-dir /private/tmp -ferror-limit 19 -fmessage- length 80 -stack-protector 1 -mstackrealign -fblocks -fobjc- runtime=macosx-10.11.0 -fencode-extended-block-signature -fcxx-exceptions -fexceptions -fmax-type-align=16 -fdiagnostics-show-option -fcolor- diagnostics -vectorize-loops -vectorize-slp -o /dev/null -x c++ /tmp/test.cpp clang -cc1 version 7.0.2 based upon LLVM 3.7.0svn default target x86_64 -apple-darwin15.2.0 ignoring nonexistent directory "/usr/include/c++/v1" #include "..." search starts here: #include <...> search starts here: /opt/local/include /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1 /usr/local/include /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/7.0.2/include /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include /usr/include /System/Library/Frameworks (framework directory) /Library/Frameworks (framework directory) End of search list. }}} {{{ MVBook:tmp osed$ mdfind -name errno.h /usr/include/sys/errno.h /opt/local/share/doc/boost/libs/exception/doc/errinfo_errno.html /System/Library/Frameworks/Kernel.framework/Versions/A/Headers/sys/errno.h /usr/include/bsm/audit_errno.h /usr/include/errno.h /usr/include/apr-1/apr_errno.h /usr/include/apr-1/apu_errno.h /usr/include/php/ext/iconv/php_iconv_supports_errno.h /opt/local/include/boost/exception/errinfo_errno.hpp /System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/Documentation/Reference/Tcl/TclLib/SetErrno.htm /usr/local/avr/include/errno.h /usr/local/CrossPack-AVR-20131216/avr/include/errno.h /usr/local/CrossPack-AVR-20131216/doc/avr-libc/group__avr__errno.html /usr/local/CrossPack-AVR-20131216/man/errno.h.3 /usr/local/octave/3.8.0/include/octave-3.8.0/octave/oct-errno.h /usr/local/octave/3.8.0/libexec/llvm-3.3/include/llvm/Support/Errno.h /Library/Frameworks/Python.framework/Versions/3.5/Resources/English.lproj/Documentation/library/errno.html }}} -- Ticket URL: <https://trac.macports.org/ticket/50218#comment:14> MacPorts <https://www.macports.org/> Ports system for OS X