#40428: py27-scipy "broken files" ----------------------+-------------------------------- Reporter: wimmer@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: | Port: ----------------------+-------------------------------- When installing scipy in a clean macports install (v2.2), macports complains about linking errors: {{{ ---> Scanning binaries for linking errors Could not open /opt/local/lib/gcc48/libgcc_s.1.dylib: Error opening or reading file (referenced from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/fftpack/_fftpack.so) DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/fftpack/_fftpack.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/fftpack/convolve.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/integrate/_dop.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/integrate/_odepack.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/integrate/_quadpack.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/integrate/lsoda.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/integrate/vode.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/interpolate/_fitpack.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/interpolate/dfitpack.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/lib/blas/fblas.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/lib/lapack/calc_lwork.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/linalg/_fblas.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/linalg/_flapack.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/linalg/_flinalg.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/linalg/calc_lwork.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/odr/__odrpack.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/optimize/_cobyla.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/optimize/_lbfgsb.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/optimize/_minpack.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/optimize/_nnls.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/optimize/_slsqp.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/optimize/minpack2.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/sparse/linalg/eigen/arpack/_arpack.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/sparse/linalg/isolve/_iterative.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/special/_ufuncs.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/special/specfun.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/stats/futil.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/stats/mvn.so as broken DEBUG: Marking /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/stats/statlib.so as broken }}} This only happens when the precompiled version is installed. Installing from source does not have these problems. After finding the linking errors, macports then continues to recompile gcc48 from source which takes ages. So, it does work in principle, but the behavior is rather uncomfortable. -- Ticket URL: <https://trac.macports.org/ticket/40428> MacPorts <http://www.macports.org/> Ports system for OS X