#25619: atlas build failure ------------------------------------+--------------------------------------- Reporter: bertagna@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.1 Keywords: | Port: atlas ------------------------------------+--------------------------------------- Changes (by jmr@…): * owner: macports-tickets@… => jameskyle@… * port: => atlas * milestone: MacPorts 2.0.0 => Old description:
hello, I'm trying to install a bioinformatics software program on my MacBook (Snow Lepord, 10.6.4) called STAMP (Statistical Analysis of Metagenomics Profiles). One of the installations required is py26-numpy. I entered the following;
c-67-170-178-177:~ anthonybertagnolli$ sudo port install py26-numpy Password: ---> Computing dependencies for py26-numpy ---> Dependencies to be installed: atlas fftw-3 py26-nose ---> Building atlas Error: Target org.macports.build returned: shell command failed Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log Error: The following dependencies failed to build: atlas fftw-3 py26-nose Error: Status 1 encountered during processing. To report a bug, see <http://guide.macports.org/#project.tickets>
Not sure what the appropriate action is at this point, would appreciate any help in getting past a shell command failure. I have been using X11 for most of my installation work, tried to install numpy using the terminal, but I got the same the result. Not sure if this even matters, just a piece of information that i thought might be useful. Thanks,
-Anthony
New description: hello, I'm trying to install a bioinformatics software program on my MacBook (Snow Lepord, 10.6.4) called STAMP (Statistical Analysis of Metagenomics Profiles). One of the installations required is py26-numpy. I entered the following; {{{ c-67-170-178-177:~ anthonybertagnolli$ sudo port install py26-numpy Password: ---> Computing dependencies for py26-numpy ---> Dependencies to be installed: atlas fftw-3 py26-nose ---> Building atlas Error: Target org.macports.build returned: shell command failed Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log Error: The following dependencies failed to build: atlas fftw-3 py26-nose Error: Status 1 encountered during processing. To report a bug, see <http://guide.macports.org/#project.tickets> }}} Not sure what the appropriate action is at this point, would appreciate any help in getting past a shell command failure. I have been using X11 for most of my installation work, tried to install numpy using the terminal, but I got the same the result. Not sure if this even matters, just a piece of information that i thought might be useful. Thanks, -Anthony -- Comment: As per the ticket guidelines linked from the New Ticket page, please fill in the Port field and cc the maintainer, remember to preview and use WikiFormatting, and don't set the Milestone field. Please attach the log mentioned in the output. -- Ticket URL: <http://trac.macports.org/ticket/25619#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS