[MacPorts] #41289: Failure to build arpack @3.1.3 on Maverick w/ Undefined symbols

10 Nov 2013


      #41289: Failure to build arpack @3.1.3 on Maverick w/ Undefined symbols
----------------------------+--------------------------------
 Reporter:  steven.levis@…  |      Owner:  macports-tickets@…
     Type:  defect          |     Status:  new
 Priority:  Normal          |  Milestone:
Component:  ports           |    Version:  2.2.1
 Keywords:                  |       Port:
----------------------------+--------------------------------
 Here's the log file.  Already tried clean --all and upgrade outdated

 version:1
 :debug:main changing euid/egid - current euid: 0 - current egid: 0
 :debug:main egid changed to: 501
 :debug:main euid changed to: 502
 :debug:main Executing org.macports.main (arpack)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.archivefetch (arpack)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.fetch (arpack)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.checksum (arpack)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.extract (arpack)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.patch (arpack)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.configure (arpack)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:build build phase started at Sat Nov  9 22:14:49 PST 2013
 :notice:build --->  Building arpack
 :debug:build Executing org.macports.build (arpack)
 :debug:build Environment: CPATH='/opt/local/include'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work/.CC_PRINT_OPTIONS'
 LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
 MACOSX_DEPLOYMENT_TARGET='10.9'
 :debug:build Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3" && /usr/bin/make -j8 -w all'
 :debug:build Executing command line:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3" && /usr/bin/make -j8 -w all
 :info:build make: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3'
 :info:build Making all in UTIL
 :info:build make[1]: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3/UTIL'
 :info:build make[1]: Nothing to be done for `all'.
 :info:build make[1]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3/UTIL'
 :info:build Making all in SRC
 :info:build make[1]: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3/SRC'
 :info:build make[1]: Nothing to be done for `all'.
 :info:build make[1]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3/SRC'
 :info:build Making all in .
 :info:build make[1]: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3'
 :info:build /bin/sh ./libtool --tag=F77   --mode=link /opt/local/bin
 /gfortran-mp-4.8  -O2 -m64 -no-undefined -version-info 2:0
 /usr/lib/libblas.dylib /usr/lib/liblapack.dylib -o libarpack.la -rpath
 /opt/local/lib  ./SRC/libarpacksrc.la ./UTIL/libarpackutil.la -lblas
 -llapack
 :info:build libtool: link: /opt/local/bin/gfortran-mp-4.8 -dynamiclib  -o
 .libs/libarpack.2.dylib   -Wl,-force_load,./SRC/.libs/libarpacksrc.a
 -Wl,-force_load,./UTIL/.libs/libarpackutil.a  -lblas -llapack  -O2 -m64
 -install_name  /opt/local/lib/libarpack.2.dylib -compatibility_version 3
 -current_version 3.0 -Wl,-single_module
 :info:build Undefined symbols for architecture x86_64:
 :info:build   "_cgeqr2_", referenced from:
 :info:build       _cneupd_ in libarpacksrc.a(cneupd.o)
 :info:build   "_clacpy_", referenced from:
 :info:build       _cnapps_ in libarpacksrc.a(cnapps.o)
 :info:build       _cneigh_ in libarpacksrc.a(cneigh.o)
 :info:build       _cneupd_ in libarpacksrc.a(cneupd.o)
 :info:build   "_clahqr_", referenced from:
 :info:build       _cneigh_ in libarpacksrc.a(cneigh.o)
 :info:build       _cneupd_ in libarpacksrc.a(cneupd.o)
 :info:build   "_clanhs_", referenced from:
 :info:build       _cnaitr_ in libarpacksrc.a(cnaitr.o)
 :info:build       _cnapps_ in libarpacksrc.a(cnapps.o)
 :info:build   "_clarnv_", referenced from:
 :info:build       _cgetv0_ in libarpacksrc.a(cgetv0.o)
 :info:build   "_clartg_", referenced from:
 :info:build       _cnapps_ in libarpacksrc.a(cnapps.o)
 :info:build   "_clascl_", referenced from:
 :info:build       _cnaitr_ in libarpacksrc.a(cnaitr.o)
 :info:build   "_claset_", referenced from:
 :info:build       _cnapps_ in libarpacksrc.a(cnapps.o)
 :info:build       _cneigh_ in libarpacksrc.a(cneigh.o)
 :info:build       _cneupd_ in libarpacksrc.a(cneupd.o)
 :info:build   "_ctrevc_", referenced from:
 :info:build       _cneigh_ in libarpacksrc.a(cneigh.o)
 :info:build       _cneupd_ in libarpacksrc.a(cneupd.o)
 :info:build   "_ctrsen_", referenced from:
 :info:build       _cneupd_ in libarpacksrc.a(cneupd.o)
 :info:build   "_cunm2r_", referenced from:
 :info:build       _cneupd_ in libarpacksrc.a(cneupd.o)
 :info:build   "_dgeqr2_", referenced from:
 :info:build       _dneupd_ in libarpacksrc.a(dneupd.o)
 :info:build       _dseupd_ in libarpacksrc.a(dseupd.o)
 :info:build   "_dlabad_", referenced from:
 :info:build       _dlaqrb_ in libarpacksrc.a(dlaqrb.o)
 :info:build       _dnaitr_ in libarpacksrc.a(dnaitr.o)
 :info:build       _dnapps_ in libarpacksrc.a(dnapps.o)
 :info:build       _znaitr_ in libarpacksrc.a(znaitr.o)
 :info:build       _znapps_ in libarpacksrc.a(znapps.o)
 :info:build   "_dlacpy_", referenced from:
 :info:build       _dnapps_ in libarpacksrc.a(dnapps.o)
 :info:build       _dneigh_ in libarpacksrc.a(dneigh.o)
 :info:build       _dsapps_ in libarpacksrc.a(dsapps.o)
 :info:build       _dneupd_ in libarpacksrc.a(dneupd.o)
 :info:build       _dseupd_ in libarpacksrc.a(dseupd.o)
 :info:build   "_dlaev2_", referenced from:
 :info:build       _dstqrb_ in libarpacksrc.a(dstqrb.o)
 :info:build   "_dlahqr_", referenced from:
 :info:build       _dneupd_ in libarpacksrc.a(dneupd.o)
 :info:build   "_dlamch_", referenced from:
 :info:build       _dlaqrb_ in libarpacksrc.a(dlaqrb.o)
 :info:build       _dstqrb_ in libarpacksrc.a(dstqrb.o)
 :info:build       _dnaitr_ in libarpacksrc.a(dnaitr.o)
 :info:build       _dnapps_ in libarpacksrc.a(dnapps.o)
 :info:build       _dnaup2_ in libarpacksrc.a(dnaup2.o)
 :info:build       _dnaupd_ in libarpacksrc.a(dnaupd.o)
 :info:build       _dnconv_ in libarpacksrc.a(dnconv.o)
 :info:build       ...
 :info:build   "_dlanhs_", referenced from:
 :info:build       _dlaqrb_ in libarpacksrc.a(dlaqrb.o)
 :info:build       _dnaitr_ in libarpacksrc.a(dnaitr.o)
 :info:build       _dnapps_ in libarpacksrc.a(dnapps.o)
 :info:build   "_dlanst_", referenced from:
 :info:build       _dstqrb_ in libarpacksrc.a(dstqrb.o)
 :info:build   "_dlanv2_", referenced from:
 :info:build       _dlaqrb_ in libarpacksrc.a(dlaqrb.o)
 :info:build   "_dlapy2_", referenced from:
 :info:build       _dstqrb_ in libarpacksrc.a(dstqrb.o)
 :info:build       _dsortc_ in libarpacksrc.a(dsortc.o)
 :info:build       _dnapps_ in libarpacksrc.a(dnapps.o)
 :info:build       _dnaup2_ in libarpacksrc.a(dnaup2.o)
 :info:build       _dnconv_ in libarpacksrc.a(dnconv.o)
 :info:build       _dneigh_ in libarpacksrc.a(dneigh.o)
 :info:build       _dneupd_ in libarpacksrc.a(dneupd.o)
 :info:build       ...
 :info:build   "_dlarf_", referenced from:
 :info:build       _dnapps_ in libarpacksrc.a(dnapps.o)
 :info:build   "_dlarfg_", referenced from:
 :info:build       _dlaqrb_ in libarpacksrc.a(dlaqrb.o)
 :info:build       _dnapps_ in libarpacksrc.a(dnapps.o)
 :info:build   "_dlarnv_", referenced from:
 :info:build       _dgetv0_ in libarpacksrc.a(dgetv0.o)
 :info:build   "_dlartg_", referenced from:
 :info:build       _dstqrb_ in libarpacksrc.a(dstqrb.o)
 :info:build       _dnapps_ in libarpacksrc.a(dnapps.o)
 :info:build       _dsapps_ in libarpacksrc.a(dsapps.o)
 :info:build   "_dlascl_", referenced from:
 :info:build       _dstqrb_ in libarpacksrc.a(dstqrb.o)
 :info:build       _dnaitr_ in libarpacksrc.a(dnaitr.o)
 :info:build       _dsaitr_ in libarpacksrc.a(dsaitr.o)
 :info:build   "_dlaset_", referenced from:
 :info:build       _dnapps_ in libarpacksrc.a(dnapps.o)
 :info:build       _dsapps_ in libarpacksrc.a(dsapps.o)
 :info:build       _dneupd_ in libarpacksrc.a(dneupd.o)
 :info:build   "_dlasr_", referenced from:
 :info:build       _dstqrb_ in libarpacksrc.a(dstqrb.o)
 :info:build   "_dorm2r_", referenced from:
 :info:build       _dneupd_ in libarpacksrc.a(dneupd.o)
 :info:build       _dseupd_ in libarpacksrc.a(dseupd.o)
 :info:build   "_dsteqr_", referenced from:
 :info:build       _dseupd_ in libarpacksrc.a(dseupd.o)
 :info:build   "_dtrevc_", referenced from:
 :info:build       _dneigh_ in libarpacksrc.a(dneigh.o)
 :info:build       _dneupd_ in libarpacksrc.a(dneupd.o)
 :info:build   "_dtrsen_", referenced from:
 :info:build       _dneupd_ in libarpacksrc.a(dneupd.o)
 :info:build   "_sgeqr2_", referenced from:
 :info:build       _sneupd_ in libarpacksrc.a(sneupd.o)
 :info:build       _sseupd_ in libarpacksrc.a(sseupd.o)
 :info:build   "_slabad_", referenced from:
 :info:build       _slaqrb_ in libarpacksrc.a(slaqrb.o)
 :info:build       _snaitr_ in libarpacksrc.a(snaitr.o)
 :info:build       _snapps_ in libarpacksrc.a(snapps.o)
 :info:build       _cnaitr_ in libarpacksrc.a(cnaitr.o)
 :info:build       _cnapps_ in libarpacksrc.a(cnapps.o)
 :info:build   "_slacpy_", referenced from:
 :info:build       _snapps_ in libarpacksrc.a(snapps.o)
 :info:build       _sneigh_ in libarpacksrc.a(sneigh.o)
 :info:build       _ssapps_ in libarpacksrc.a(ssapps.o)
 :info:build       _sneupd_ in libarpacksrc.a(sneupd.o)
 :info:build       _sseupd_ in libarpacksrc.a(sseupd.o)
 :info:build   "_slaev2_", referenced from:
 :info:build       _sstqrb_ in libarpacksrc.a(sstqrb.o)
 :info:build   "_slahqr_", referenced from:
 :info:build       _sneupd_ in libarpacksrc.a(sneupd.o)
 :info:build   "_slamch_", referenced from:
 :info:build       _slaqrb_ in libarpacksrc.a(slaqrb.o)
 :info:build       _sstqrb_ in libarpacksrc.a(sstqrb.o)
 :info:build       _snaitr_ in libarpacksrc.a(snaitr.o)
 :info:build       _snapps_ in libarpacksrc.a(snapps.o)
 :info:build       _snaup2_ in libarpacksrc.a(snaup2.o)
 :info:build       _snaupd_ in libarpacksrc.a(snaupd.o)
 :info:build       _snconv_ in libarpacksrc.a(snconv.o)
 :info:build       ...
 :info:build   "_slanhs_", referenced from:
 :info:build       _slaqrb_ in libarpacksrc.a(slaqrb.o)
 :info:build       _snaitr_ in libarpacksrc.a(snaitr.o)
 :info:build       _snapps_ in libarpacksrc.a(snapps.o)
 :info:build   "_slanst_", referenced from:
 :info:build       _sstqrb_ in libarpacksrc.a(sstqrb.o)
 :info:build   "_slanv2_", referenced from:
 :info:build       _slaqrb_ in libarpacksrc.a(slaqrb.o)
 :info:build   "_slapy2_", referenced from:
 :info:build       _sstqrb_ in libarpacksrc.a(sstqrb.o)
 :info:build       _ssortc_ in libarpacksrc.a(ssortc.o)
 :info:build       _snapps_ in libarpacksrc.a(snapps.o)
 :info:build       _snaup2_ in libarpacksrc.a(snaup2.o)
 :info:build       _snconv_ in libarpacksrc.a(snconv.o)
 :info:build       _sneigh_ in libarpacksrc.a(sneigh.o)
 :info:build       _sneupd_ in libarpacksrc.a(sneupd.o)
 :info:build       ...
 :info:build   "_slarf_", referenced from:
 :info:build       _snapps_ in libarpacksrc.a(snapps.o)
 :info:build   "_slarfg_", referenced from:
 :info:build       _slaqrb_ in libarpacksrc.a(slaqrb.o)
 :info:build       _snapps_ in libarpacksrc.a(snapps.o)
 :info:build   "_slarnv_", referenced from:
 :info:build       _sgetv0_ in libarpacksrc.a(sgetv0.o)
 :info:build   "_slartg_", referenced from:
 :info:build       _sstqrb_ in libarpacksrc.a(sstqrb.o)
 :info:build       _snapps_ in libarpacksrc.a(snapps.o)
 :info:build       _ssapps_ in libarpacksrc.a(ssapps.o)
 :info:build   "_slascl_", referenced from:
 :info:build       _sstqrb_ in libarpacksrc.a(sstqrb.o)
 :info:build       _snaitr_ in libarpacksrc.a(snaitr.o)
 :info:build       _ssaitr_ in libarpacksrc.a(ssaitr.o)
 :info:build   "_slaset_", referenced from:
 :info:build       _snapps_ in libarpacksrc.a(snapps.o)
 :info:build       _ssapps_ in libarpacksrc.a(ssapps.o)
 :info:build       _sneupd_ in libarpacksrc.a(sneupd.o)
 :info:build   "_slasr_", referenced from:
 :info:build       _sstqrb_ in libarpacksrc.a(sstqrb.o)
 :info:build   "_sorm2r_", referenced from:
 :info:build       _sneupd_ in libarpacksrc.a(sneupd.o)
 :info:build       _sseupd_ in libarpacksrc.a(sseupd.o)
 :info:build   "_ssteqr_", referenced from:
 :info:build       _sseupd_ in libarpacksrc.a(sseupd.o)
 :info:build   "_strevc_", referenced from:
 :info:build       _sneigh_ in libarpacksrc.a(sneigh.o)
 :info:build       _sneupd_ in libarpacksrc.a(sneupd.o)
 :info:build   "_strsen_", referenced from:
 :info:build       _sneupd_ in libarpacksrc.a(sneupd.o)
 :info:build   "_zgeqr2_", referenced from:
 :info:build       _zneupd_ in libarpacksrc.a(zneupd.o)
 :info:build   "_zlacpy_", referenced from:
 :info:build       _znapps_ in libarpacksrc.a(znapps.o)
 :info:build       _zneigh_ in libarpacksrc.a(zneigh.o)
 :info:build       _zneupd_ in libarpacksrc.a(zneupd.o)
 :info:build   "_zlahqr_", referenced from:
 :info:build       _zneigh_ in libarpacksrc.a(zneigh.o)
 :info:build       _zneupd_ in libarpacksrc.a(zneupd.o)
 :info:build   "_zlanhs_", referenced from:
 :info:build       _znaitr_ in libarpacksrc.a(znaitr.o)
 :info:build       _znapps_ in libarpacksrc.a(znapps.o)
 :info:build   "_zlarnv_", referenced from:
 :info:build       _zgetv0_ in libarpacksrc.a(zgetv0.o)
 :info:build   "_zlartg_", referenced from:
 :info:build       _znapps_ in libarpacksrc.a(znapps.o)
 :info:build   "_zlascl_", referenced from:
 :info:build       _znaitr_ in libarpacksrc.a(znaitr.o)
 :info:build   "_zlaset_", referenced from:
 :info:build       _znapps_ in libarpacksrc.a(znapps.o)
 :info:build       _zneigh_ in libarpacksrc.a(zneigh.o)
 :info:build       _zneupd_ in libarpacksrc.a(zneupd.o)
 :info:build   "_ztrevc_", referenced from:
 :info:build       _zneigh_ in libarpacksrc.a(zneigh.o)
 :info:build       _zneupd_ in libarpacksrc.a(zneupd.o)
 :info:build   "_ztrsen_", referenced from:
 :info:build       _zneupd_ in libarpacksrc.a(zneupd.o)
 :info:build   "_zunm2r_", referenced from:
 :info:build       _zneupd_ in libarpacksrc.a(zneupd.o)
 :info:build ld: symbol(s) not found for architecture x86_64
 :info:build collect2: error: ld returned 1 exit status
 :info:build make[1]: *** [libarpack.la] Error 1
 :info:build make[1]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3'
 :info:build make: *** [all-recursive] Error 1
 :info:build make: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3'
 :info:build Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
 /arpack-ng-3.1.3" && /usr/bin/make -j8 -w all
 :info:build Exit code: 2
 :error:build org.macports.build for port arpack returned: command
 execution failed
 :debug:build Error code: CHILDSTATUS 60940 2
 :debug:build Backtrace: command execution failed
     while executing
 "system -nice 0 $fullcmdstring"
     ("eval" body line 1)
     invoked from within
 "eval system $notty $nice \$fullcmdstring"
     invoked from within
 "command_exec build"
     (procedure "portbuild::build_main" line 8)
     invoked from within
 "$procedure $targetname"
 :info:build Warning: targets not executed for arpack:
 org.macports.activate org.macports.build org.macports.destroot
 org.macports.install
 :error:build Failed to install arpack
 :debug:build couldn't open
 "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex":
 no such file or directory
     while executing
 "open [file join $dir tclIndex]"
 :notice:build Please see the log file for port arpack for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/main.log

-- 
Ticket URL: <https://trac.macports.org/ticket/41289>
MacPorts <http://www.macports.org/>
Ports system for OS X