Re: [MacPorts] #43867: netcdf not building on snow leopard

16 Jun 2014

      #43867: netcdf not  building on snow leopard
------------------------+-----------------------
  Reporter:  gnurser@…  |      Owner:  takeshi@…
      Type:  defect     |     Status:  new
  Priority:  Normal     |  Milestone:
 Component:  ports      |    Version:  2.3.0
Resolution:             |   Keywords:
      Port:  netcdf     |
------------------------+-----------------------

Comment (by smasson@…):

 The directory
 {{{
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/netcdf/files
 }}}
 is not existing...
 I guess it is
 {{{
 /opt/local/var/macports/sources/rsync.macports.org/release/ports/science/netcdf/files
 }}}
 I am right?[[BR]]
 I also think the the file as to be saved as patch-netcdf.diff and not
 patch_netcdf.diff[[BR]]

 I tried with netcdf-4.3.2_0+dap+gcc48+netcdf4+openmpi which has the same
 error :
 {{{
 :info:build Undefined symbols for architecture x86_64:
 :info:build   "_H5Pset_fapl_mpiposix", referenced from:
 :info:build       import-atom in libnetcdf.dylib
 :info:build ld: symbol(s) not found for architecture x86_64
 :info:build collect2: error: ld returned 1 exit status
 }}}

 With the modifications given in (i), (ii) and (iii), I get this new error
 message in the main.log file:

 {{{
 :info:patch patching file configure
 :info:patch --->  Applying patch-netcdf.diff
 :debug:patch Environment:
 CC_PRINT_OPTIONS='YES'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_netcdf/netcdf/work/.CC_PRINT_OPTIONS'
 CPATH='/opt/local/include'
 LIBRARY_PATH='/opt/local/lib'
 MACOSX_DEPLOYMENT_TARGET='10.9'
 :debug:patch Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_netcdf/netcdf/work/netcdf-c-4.3.2"
 && /usr/bin/patch -p0'
 :debug:patch Executing command line:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_netcdf/netcdf/work/netcdf-c-4.3.2"
 && /usr/bin/patch -p0 <
 '/opt/local/var/macports/sources/rsync.macports.org/release/ports/science/netcdf/files
 /patch-netcdf.diff'
 :info:patch can't find file to patch at input line 5
 :info:patch Perhaps you used the wrong -p or --strip option?
 :info:patch The text leading up to this was:
 :info:patch --------------------------
 :info:patch |diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md
 :info:patch |index 27f228c..1a69d17 100644
 :info:patch |--- a/RELEASE_NOTES.md
 :info:patch |+++ b/RELEASE_NOTES.md
 :info:patch --------------------------
 :info:patch File to patch:
 :info:patch Skip this patch? [y]
 :info:patch Skipping patch.
 :info:patch 1 out of 1 hunk ignored
 :info:patch can't find file to patch at input line 18
 :info:patch Perhaps you used the wrong -p or --strip option?
 :info:patch The text leading up to this was:
 :info:patch --------------------------
 :info:patch |diff --git a/libsrc4/nc4file.c b/libsrc4/nc4file.c
 :info:patch |index ec3bb0c..5c957be 100644
 :info:patch |--- a/libsrc4/nc4file.c
 :info:patch |+++ b/libsrc4/nc4file.c
 :info:patch --------------------------
 :info:patch File to patch:
 :info:patch Skip this patch? [y]
 :info:patch Skipping patch.
 :info:patch 4 out of 4 hunks ignored
 :info:patch can't find file to patch at input line 102
 :info:patch Perhaps you used the wrong -p or --strip option?
 :info:patch The text leading up to this was:
 :info:patch --------------------------
 :info:patch |diff --git a/nc_test4/tst_nc4perf.c b/nc_test4/tst_nc4perf.c
 :info:patch |index 47af70e..3528b82 100644
 :info:patch |--- a/nc_test4/tst_nc4perf.c
 :info:patch |+++ b/nc_test4/tst_nc4perf.c
 :info:patch --------------------------
 :info:patch File to patch:
 :info:patch Skip this patch? [y]
 :info:patch Skipping patch.
 :info:patch 1 out of 1 hunk ignored
 :info:patch can't find file to patch at input line 118
 :info:patch Perhaps you used the wrong -p or --strip option?
 :info:patch The text leading up to this was:
 :info:patch --------------------------
 :info:patch |diff --git a/nc_test4/tst_parallel3.c
 b/nc_test4/tst_parallel3.c
 :info:patch |index 27f9c98..9fa534f 100644
 :info:patch |--- a/nc_test4/tst_parallel3.c
 :info:patch |+++ b/nc_test4/tst_parallel3.c
 :info:patch --------------------------
 :info:patch File to patch:
 :info:patch Skip this patch? [y]
 :info:patch Skipping patch.
 :info:patch 1 out of 1 hunk ignored
 :info:patch Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_netcdf/netcdf/work/netcdf-c-4.3.2"
 && /usr/bin/patch -p0 <
 '/opt/local/var/macports/sources/rsync.macports.org/release/ports/science/netcdf/files
 /patch-netcdf.diff'
 :info:patch Exit code: 1
 :error:patch org.macports.patch for port netcdf returned: command
 execution failed
 :debug:patch Error code: CHILDSTATUS 8234 1
 :debug:patch Backtrace: command execution failed
     while executing
 "system $fullcmdstring"
     ("eval" body line 1)
     invoked from within
 "eval system $notty $nice \$fullcmdstring"
     invoked from within
 "command_exec patch "" "< '$patch'""
     (procedure "portpatch::patch_main" line 35)
     invoked from within
 "portpatch::patch_main org.macports.patch"
     ("eval" body line 1)
     invoked from within
 "eval $procedure $targetname"
 :info:patch Warning: targets not executed for netcdf: org.macports.install
 org.macports.patch org.macports.configure org.macports.build
 org.macports.destroot
 :notice:patch Please see the log file for port netcdf for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_netcdf/netcdf/main.log

 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/43867#comment:15>
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