#34685: py27-tables @2.3.1 - build failure ---------------------------------------+------------------------------------ Reporter: freezingmariner@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Keywords: | Port: py27-tables ---------------------------------------+------------------------------------ py27-tables is not building on my 10.7.4 system with hdf5-18+gcc46+openmpi. Here is the error log: {{{ :info:build * Found numpy 1.6.2 package installed. :info:build * Found numexpr 1.4.2 package installed. :info:build * Found Cython 0.16 package installed. :info:build * Found HDF5 headers at ``/opt/local/include``, library at ``/opt/local/lib``. :info:build .. WARNING:: Could not find the HDF5 runtime. :info:build The HDF5 shared library was *not* found in the default library :info:build paths. In case of runtime problems, please remember to install it. :info:build * Found LZO 2 headers at ``/opt/local/include``, library at ``/opt/local/lib``. :info:build .. WARNING:: Could not find the LZO 2 runtime. :info:build The LZO 2 shared library was *not* found in the default library :info:build paths. In case of runtime problems, please remember to install it. :info:build * Skipping detection of LZO 1 since LZO 2 has already been found. :info:build * Found bzip2 headers at ``/opt/local/include``, library at ``/opt/local/lib``. :info:build cythoning tables/linkExtension.pyx to tables/linkExtension.c :info:build running build_ext :info:build building 'tables.utilsExtension' extension :info:build C compiler: /usr/bin/clang -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch x86_64 :info:build :info:build compile options: '-DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/numpy/core/include -I/opt/local/include -I/usr/include -I/usr/local/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' :info:build extra options: '-arch x86_64 -Isrc -DH5_USE_16_API' :info:build clang: blosc/blosc.c :info:build clang: tables/utilsExtension.c :info:build In file included from tables/utilsExtension.c:239: :info:build In file included from /opt/local/include/hdf5.h:24: :info:build /opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file not found :info:build # include <mpi.h> :info:build ^ :info:build 1 error generated. :info:build In file included from tables/utilsExtension.c:239: :info:build In file included from /opt/local/include/hdf5.h:24: :info:build /opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file not found :info:build # include <mpi.h> :info:build ^ :info:build 1 error generated. :info:build error: Command "/usr/bin/clang -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch x86_64 -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/numpy/core/include -I/opt/local/include -I/usr/include -I/usr/local/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c tables/utilsExtension.c -o build/temp.macosx-10.7-x86_64-2.7/tables/utilsExtension.o -arch x86_64 -Isrc -DH5_USE_16_API" failed with exit status 1 :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py- tables/py27-tables/work/tables-2.3.1" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build_ext --inplace --hdf5=/opt/local --bzip2=/opt/local --lzo=/opt/local :info:build Exit code: 1 :error:build org.macports.build for port py27-tables returned: command execution failed :debug:build Error code: CHILDSTATUS 3604 1 :debug:build Backtrace: command execution failed while executing "system -nice 0 $fullcmdstring" ("eval" body line 1) invoked from within "eval system $notty $nice \$fullcmdstring" invoked from within "command_exec build" (procedure "portbuild::build_main" line 8) invoked from within "$procedure $targetname" :info:build Warning: targets not executed for py27-tables: org.macports.activate org.macports.build org.macports.destroot org.macports.install :notice:build Please see the log file for port py27-tables for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py-tables/py27-tables/main.log }}} -- Ticket URL: <https://trac.macports.org/ticket/34685> MacPorts <http://www.macports.org/> Ports system for Mac OS