#17231: netcdf install failure ----------------------------------+----------------------------------------- Reporter: mbauer@giss.nasa.gov | Owner: macports-tickets@lists.macosforge.org Type: defect | Status: new Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.6.0 Keywords: | Port: ----------------------------------+----------------------------------------- Hello, I'm trying to install netcdf 4.0 via macports (mac pro, xeon, Tiger) and I get the following error: subtropics:~/mcms mbauer$ sudo port -v install netcdf Password: ---> Configuring netcdf configure: netCDF 4.0 checking build system type... i386-apple-darwin8.11.1 checking host system type... i386-apple-darwin8.11.1 checking for a BSD-compatible install... /usr/bin/install checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... gawk checking whether make sets $(MAKE)... yes configure: checking user options checking whether CXX is set to ''... no checking whether FC is set to ''... no checking whether F90 is set to ''... no checking whether this is a netCDF-4.x build... yes configure: Processing NetCDF-4 options. checking whether netCDF-4 is to be built... checking whether DAP client is to be built... checking whether new netCDF-4 C++ API is to be built... no checking whether HDF5 should do data conversions... checking whether extra example tests should be run... checking whether parallel IO tests should be run... no checking whether a location for the HDF5 library was specified... . checking whether a location for the ZLIB library was specified... checking whether a location for the SZLIB library was specified... checking whether netCDF-4 logging is enabled... checking whether netCDF extra tests should be run (developers only)... no checking whether documentation is to be installed... no checking whether Fortran compiler(s) should be tested during configure... yes checking whether configure should try to set compiler flags... yes checking whether FFIO will be used... no checking whether to skip C++, F77, or F90 APIs if compiler is broken... yes checking whether only the C library is desired... no checking whether examples should be built... yes checking whether F77 API is desired... yes checking whether F90 API is desired... yes checking whether fortran type sizes should be checked... yes checking whether C API is desired... yes checking where to get netCDF C-only library for separate fortran libraries... checking whether CXX API is desired... yes checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump should be built... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmaks should be run (experimental)... no checking whether extreme numbers should be used in tests... yes checking where to put large temp files if large file tests are run... . checking whether a win32 DLL is desired... no checking whether separate fortran libs are desired... yes configure: finding C compiler checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/bin/gcc-4.0 accepts -g... yes checking for /usr/bin/gcc-4.0 option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of /usr/bin/gcc-4.0... gcc3 checking whether /usr/bin/gcc-4.0 and cc understand -c and -o together... yes checking for an ANSI C-conforming const... yes configure: finding Fortran compiler (will not be used if Fortran API is not desired) checking for xlf90... no checking for fort... no checking for xlf95... no checking for ifort... ifort checking whether we are using the GNU Fortran compiler... no checking whether ifort accepts -g... yes checking for xlf... no checking for fort... no checking for xlf95... no checking for ifort... ifort checking whether we are using the GNU Fortran 77 compiler... no checking whether ifort accepts -g... yes configure: setting up Fortran 90 checking for Fortran flag to compile .f90 files... none checking fortran 90 modules inclusion flag... -I checking if Fortran compiler can handle Fortran-90... no configure: WARNING: No F90 compiler found. F90 API will not be built. configure: finding C++ compiler (will not be used if C++ API is not desired) checking whether we are using the GNU C++ compiler... yes checking whether /usr/bin/g++-4.0 accepts -g... yes checking dependency style of /usr/bin/g++-4.0... gcc3 configure: setting up libtool checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /usr/bin/gcc-4.0... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -p checking the name lister (/usr/bin/nm -p) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/bin/ld option to reload object files... -r checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -p output from /usr/bin/gcc-4.0 object... ok checking for dsymutil... dsymutil checking for nmedit... nmedit checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking how to run the C preprocessor... /usr/bin/cpp-4.0 checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether /usr/bin/g++-4.0 accepts -g... (cached) yes checking dependency style of /usr/bin/g++-4.0... (cached) gcc3 checking how to run the C++ preprocessor... /usr/bin/g++-4.0 -E checking whether we are using the GNU Fortran 77 compiler... (cached) no checking whether ifort accepts -g... (cached) yes checking whether we are using the GNU Fortran compiler... (cached) no checking whether ifort accepts -g... (cached) yes checking for objdir... .libs checking if /usr/bin/gcc-4.0 supports -fno-rtti -fno-exceptions... no checking for /usr/bin/gcc-4.0 option to produce PIC... -fno-common -DPIC checking if /usr/bin/gcc-4.0 PIC flag -fno-common -DPIC works... yes checking if /usr/bin/gcc-4.0 static flag -static works... no checking if /usr/bin/gcc-4.0 supports -c -o file.o... yes checking if /usr/bin/gcc-4.0 supports -c -o file.o... (cached) yes checking whether the /usr/bin/gcc-4.0 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin8.11.1 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by /usr/bin/g++-4.0... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... no checking whether the /usr/bin/g++-4.0 linker (/usr/bin/ld) supports shared libraries... yes checking for /usr/bin/g++-4.0 option to produce PIC... -fno-common -DPIC checking if /usr/bin/g++-4.0 PIC flag -fno-common -DPIC works... yes checking if /usr/bin/g++-4.0 static flag -static works... no checking if /usr/bin/g++-4.0 supports -c -o file.o... yes checking if /usr/bin/g++-4.0 supports -c -o file.o... (cached) yes checking whether the /usr/bin/g++-4.0 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin8.11.1 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ifort option to produce PIC... checking if ifort static flag works... no checking if ifort supports -c -o file.o... yes checking if ifort supports -c -o file.o... (cached) yes checking whether the ifort linker (/usr/bin/ld) supports shared libraries... no checking dynamic linker characteristics... darwin8.11.1 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking for ifort option to produce PIC... checking if ifort static flag works... no checking if ifort supports -c -o file.o... yes checking if ifort supports -c -o file.o... (cached) yes checking whether the ifort linker (/usr/bin/ld) supports shared libraries... no checking dynamic linker characteristics... darwin8.11.1 dyld checking how to hardcode library paths into programs... immediate configure: finding other utilities checking for a BSD-compatible install... /usr/bin/install configure: trying to set fortran flags for this platform configure: trying to set flags for this platform checking if _HPUX_SOURCE should be set... no checking if Solaris -Xa option is needed... CFLAGS=-O2 -fno-common checking if we need to set _LARGE_FILES despite results of previous tests... _LARGE_FILES= checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking CPPFLAGS... -DNDEBUG -Df2cFortran checking CC CFLAGS... /usr/bin/gcc-4.0 -O2 -fno-common checking type /usr/bin/gcc-4.0... /usr/bin/gcc-4.0 is /usr/bin/gcc-4.0 checking CXX... /usr/bin/g++-4.0 checking CXXFLAGS... -O2 -fno-common checking type /usr/bin/g++-4.0... /usr/bin/g++-4.0 is /usr/bin/g++-4.0 checking FC... ifort checking FFLAGS... -O2 checking type ifort... ifort is /usr/bin/ifort checking F90... unset checking AR... ar checking AR_FLAGS... cru checking type ar... ar is /usr/bin/ar checking NM... /usr/bin/nm -p checking NMFLAGS... checking for /usr/bin/nm... /usr/bin/nm -p checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "byte"... yes checking for Fortran "integer*2"... yes checking if Fortran "byte" is C "signed char"... configure: error: Could not link conftestf.o and conftest.o Error: Target org.macports.configure returned: configure failure: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_netcdf/work/netcdf-4.0" && ./configure --prefix=/opt/local --enable-shared " returned error 1 Command output: checking for a BSD-compatible install... /usr/bin/install configure: trying to set fortran flags for this platform configure: trying to set flags for this platform checking if _HPUX_SOURCE should be set... no checking if Solaris -Xa option is needed... CFLAGS=-O2 -fno-common checking if we need to set _LARGE_FILES despite results of previous tests... _LARGE_FILES= checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking CPPFLAGS... -DNDEBUG -Df2cFortran checking CC CFLAGS... /usr/bin/gcc-4.0 -O2 -fno-common checking type /usr/bin/gcc-4.0... /usr/bin/gcc-4.0 is /usr/bin/gcc-4.0 checking CXX... /usr/bin/g++-4.0 checking CXXFLAGS... -O2 -fno-common checking type /usr/bin/g++-4.0... /usr/bin/g++-4.0 is /usr/bin/g++-4.0 checking FC... ifort checking FFLAGS... -O2 checking type ifort... ifort is /usr/bin/ifort checking F90... unset checking AR... ar checking AR_FLAGS... cru checking type ar... ar is /usr/bin/ar checking NM... /usr/bin/nm -p checking NMFLAGS... checking for /usr/bin/nm... /usr/bin/nm -p checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "byte"... yes checking for Fortran "integer*2"... yes checking if Fortran "byte" is C "signed char"... configure: error: Could not link conftestf.o and conftest.o Warning: the following items did not execute (for netcdf): org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install Error: Status 1 encountered during processing. ---- Going to /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_netcdf/work/netcdf-4.0 and manually trying configure gives the same result. This can be fixed by issuing FC=g95 export FC and manually launching config and make etc. Mike Mike -- Ticket URL: <http://trac.macports.org/ticket/17231> MacPorts <http://www.macports.org/> Ports system for Mac OS