[MacPorts] #21584: octave-3.2.2 -- build failure -- likely arpack issue
#21584: octave-3.2.2 -- build failure -- likely arpack issue ---------------------------------+------------------------------------------ Reporter: rkcrockett@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: octave arpack gcc43 | Port: ---------------------------------+------------------------------------------ Building octave +gcc43 from a fresh macports install, 10.6.1, I get: ---> Building octave Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_octave/work/octave-3.2.2" && /usr/bin/make -j2 all " returned error 2 Command output: /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o convhulln.oct pic/convhulln.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran -lqhull /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o daspk.oct pic/daspk.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dasrt.oct pic/dasrt.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dassl.oct pic/dassl.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o det.oct pic/det.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dispatch.oct pic/dispatch.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dlmread.oct pic/dlmread.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dmperm.oct pic/dmperm.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o eig.oct pic/eig.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o eigs.oct pic/eigs.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran -larpack /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o fft.oct pic/fft.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran Undefined symbols: "_znaupd_", referenced from: EigsComplexNonSymmetricFunc(ComplexColumnVector (*)(ComplexColumnVector const&, int&), int, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<ComplexMatrix>(ComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<SparseComplexMatrix>(SparseComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<SparseComplexMatrix>(SparseComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<ComplexMatrix>(ComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o "_zneupd_", referenced from: EigsComplexNonSymmetricFunc(ComplexColumnVector (*)(ComplexColumnVector const&, int&), int, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<ComplexMatrix>(ComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<SparseComplexMatrix>(SparseComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<SparseComplexMatrix>(SparseComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<ComplexMatrix>(ComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o ld: symbol(s) not found collect2: ld returned 1 exit status make[2]: *** [eigs.oct] Error 1 make[2]: *** Waiting for unfinished jobs.... make[1]: *** [src] Error 2 make: *** [all] Error 2 Error: Status 1 encountered during processing. -- Ticket URL: <http://trac.macports.org/ticket/21584> MacPorts <http://www.macports.org/> Ports system for Mac OS
#21584: octave-3.2.2 -- build failure -- likely arpack issue --------------------------------+------------------------------------------- Reporter: rkcrockett@… | Owner: alakazam@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: arpack gcc43 | Port: octave --------------------------------+------------------------------------------- Changes (by blb@…): * cc: stechert@… (added) * keywords: octave arpack gcc43 => arpack gcc43 * owner: macports-tickets@… => alakazam@… * port: => octave Old description:
Building octave +gcc43 from a fresh macports install, 10.6.1, I get:
---> Building octave Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_octave/work/octave-3.2.2" && /usr/bin/make -j2 all " returned error 2 Command output: /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o convhulln.oct pic/convhulln.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran -lqhull /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o daspk.oct pic/daspk.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dasrt.oct pic/dasrt.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dassl.oct pic/dassl.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o det.oct pic/det.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dispatch.oct pic/dispatch.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dlmread.oct pic/dlmread.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dmperm.oct pic/dmperm.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o eig.oct pic/eig.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o eigs.oct pic/eigs.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran -larpack /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o fft.oct pic/fft.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran Undefined symbols: "_znaupd_", referenced from: EigsComplexNonSymmetricFunc(ComplexColumnVector (*)(ComplexColumnVector const&, int&), int, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<ComplexMatrix>(ComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<SparseComplexMatrix>(SparseComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<SparseComplexMatrix>(SparseComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<ComplexMatrix>(ComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o "_zneupd_", referenced from: EigsComplexNonSymmetricFunc(ComplexColumnVector (*)(ComplexColumnVector const&, int&), int, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<ComplexMatrix>(ComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<SparseComplexMatrix>(SparseComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<SparseComplexMatrix>(SparseComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<ComplexMatrix>(ComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o ld: symbol(s) not found collect2: ld returned 1 exit status make[2]: *** [eigs.oct] Error 1 make[2]: *** Waiting for unfinished jobs.... make[1]: *** [src] Error 2 make: *** [all] Error 2
Error: Status 1 encountered during processing.
New description: Building octave +gcc43 from a fresh macports install, 10.6.1, I get: {{{ ---> Building octave Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_octave/work/octave-3.2.2" && /usr/bin/make -j2 all " returned error 2 Command output: /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o convhulln.oct pic/convhulln.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran -lqhull /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o daspk.oct pic/daspk.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dasrt.oct pic/dasrt.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dassl.oct pic/dassl.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o det.oct pic/det.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dispatch.oct pic/dispatch.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dlmread.oct pic/dlmread.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o dmperm.oct pic/dmperm.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o eig.oct pic/eig.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o eigs.oct pic/eigs.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran -larpack /opt/local/bin/g++-mp-4.3 -bundle -bundle_loader ../src/octave -L/opt/local/lib -o fft.oct pic/fft.o -L../libcruft -lcruft -L../liboctave -loctave -L. -loctinterp -lcholmod -lmetis -lumfpack -lamd -lcamd -lcolamd -lccolamd -lcxsparse -lfftw3 -lfftw3f -lqrupdate -larpack -lreadline -lncurses -framework Accelerate -lhdf5 -lz -lm -L/opt/local/lib -lfreetype -lz -Wl,-framework -Wl,OpenGL -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4 -L/opt/local/lib/gcc43/gcc/x86_64-apple-darwin10/4.3.4/../../.. -lhdf5 -lz -lm -lfreetype -lgfortranbegin -lgfortran Undefined symbols: "_znaupd_", referenced from: EigsComplexNonSymmetricFunc(ComplexColumnVector (*)(ComplexColumnVector const&, int&), int, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<ComplexMatrix>(ComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<SparseComplexMatrix>(SparseComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<SparseComplexMatrix>(SparseComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<ComplexMatrix>(ComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o "_zneupd_", referenced from: EigsComplexNonSymmetricFunc(ComplexColumnVector (*)(ComplexColumnVector const&, int&), int, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<ComplexMatrix>(ComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrix<SparseComplexMatrix>(SparseComplexMatrix const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<SparseComplexMatrix>(SparseComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, SparseComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o int EigsComplexNonSymmetricMatrixShift<ComplexMatrix>(ComplexMatrix const&, std::complex<double>, int, int, int&, ComplexMatrix&, ComplexColumnVector&, ComplexMatrix const&, ColumnVector&, ComplexColumnVector&, std::basic_ostream<char, std::char_traits<char> >&, double, int, bool, int, int) in eigs.o ld: symbol(s) not found collect2: ld returned 1 exit status make[2]: *** [eigs.oct] Error 1 make[2]: *** Waiting for unfinished jobs.... make[1]: *** [src] Error 2 make: *** [all] Error 2 Error: Status 1 encountered during processing. }}} -- -- Ticket URL: <http://trac.macports.org/ticket/21584#comment:1> MacPorts <http://www.macports.org/> Ports system for Mac OS
#21584: octave-3.2.2 -- build failure -- likely arpack issue --------------------------------+------------------------------------------- Reporter: rkcrockett@… | Owner: alakazam@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: arpack gcc43 | Port: octave --------------------------------+------------------------------------------- Comment(by holin@…): See #21989 for a possible solution. -- Ticket URL: <http://trac.macports.org/ticket/21584#comment:7> MacPorts <http://www.macports.org/> Ports system for Mac OS
#21584: octave-3.2.2 -- build failure -- likely arpack issue --------------------------------+------------------------------------------- Reporter: rkcrockett@… | Owner: alakazam@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: arpack gcc43 | Port: octave --------------------------------+------------------------------------------- Comment(by pmcarlton@…): Replying to [comment:7 holin@…]:
See #21989 for a possible solution.
I changed the octave 3.2.2 Portfile to read use_parallel_build no and it still didn't work, failed at eigs.oct complaining about zneupd and znaupd. I am running a fresh install of MacPorts in 10.6.1. I tried inserting that line into the arpack Portfile and the octave-arpack Portfile too, and it still didn't work. -- Ticket URL: <http://trac.macports.org/ticket/21584#comment:8> MacPorts <http://www.macports.org/> Ports system for Mac OS
#21584: octave-3.2.2 -- build failure -- likely arpack issue --------------------------------+------------------------------------------- Reporter: rkcrockett@… | Owner: alakazam@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: arpack gcc43 | Port: octave --------------------------------+------------------------------------------- Comment(by halfpricewine@…): You shouldn't have to insert it because the arpack portfile was updated to have it? I cleaned everything and retried and it worked after the arpack fix. -- Ticket URL: <http://trac.macports.org/ticket/21584#comment:9> MacPorts <http://www.macports.org/> Ports system for Mac OS
#21584: octave-3.2.2 -- build failure -- likely arpack issue --------------------------------+------------------------------------------- Reporter: rkcrockett@… | Owner: alakazam@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: arpack gcc43 | Port: octave --------------------------------+------------------------------------------- Comment(by pmcarlton@…): Replying to [comment:9 halfpricewine@…]:
You shouldn't have to insert it because the arpack portfile was updated to have it? I cleaned everything and retried and it worked after the arpack fix.
Ah, my mistake was not cleaning, I think. Mine works perfectly well now after the fix. -- Ticket URL: <http://trac.macports.org/ticket/21584#comment:10> MacPorts <http://www.macports.org/> Ports system for Mac OS
#21584: octave-3.2.2 -- build failure -- likely arpack issue --------------------------------+------------------------------------------- Reporter: rkcrockett@… | Owner: alakazam@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: arpack gcc43 | Port: octave --------------------------------+------------------------------------------- Comment(by rkcrockett@…): @holin: Thanks, #21989 fixes this for me, as well. @alakazam: I think you can mark this ticket fixed. -- Ticket URL: <http://trac.macports.org/ticket/21584#comment:11> MacPorts <http://www.macports.org/> Ports system for Mac OS
#21584: octave-3.2.2 -- build failure -- likely arpack issue --------------------------------+------------------------------------------- Reporter: rkcrockett@… | Owner: alakazam@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: arpack gcc43 | Port: octave --------------------------------+------------------------------------------- Comment(by bpabbott@…): Works for me as well -- Ticket URL: <http://trac.macports.org/ticket/21584#comment:12> MacPorts <http://www.macports.org/> Ports system for Mac OS
#21584: octave-3.2.2 -- build failure -- likely arpack issue ---------------------------------+------------------------------------------ Reporter: rkcrockett@… | Owner: alakazam@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Resolution: fixed | Keywords: arpack gcc43 Port: octave | ---------------------------------+------------------------------------------ Changes (by macsforever2000@…): * status: new => closed * resolution: => fixed Comment: Confirmed. -- Ticket URL: <http://trac.macports.org/ticket/21584#comment:13> MacPorts <http://www.macports.org/> Ports system for Mac OS
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