#38724: py*-scipy fail to upgrade to 0.12.0 -------------------------------+-------------------- Reporter: david.w.watson@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: py-scipy | -------------------------------+-------------------- Changes (by macsforever2000@…): * cc: sean@… (removed) * owner: macports-tickets@… => sean@… * port: py*-scipy => py-scipy Comment: I see the same issue. Mac OS X 10.8.3. Xcode 4.6.1. {{{ $ port installed py27-scipy The following ports are currently installed: py27-scipy @0.11.0_0+atlas+gcc47 (active) }}} -- Ticket URL: <https://trac.macports.org/ticket/38724#comment:1> MacPorts <http://www.macports.org/> Ports system for OS X

#38724: py*-scipy fail to upgrade to 0.12.0 -------------------------------+-------------------- Reporter: david.w.watson@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: py-scipy | -------------------------------+-------------------- Comment (by egall@…): mf2k, your error looks different from david.w.watson's. david.w.watson's ones all look like they have to do with this: {{{ Symbol not found: _omp_get_num_threads }}} -- Ticket URL: <https://trac.macports.org/ticket/38724#comment:4> MacPorts <http://www.macports.org/> Ports system for OS X

#38724: py*-scipy fail to upgrade to 0.12.0 -------------------------------+-------------------- Reporter: david.w.watson@… | Owner: sean@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: worksforme | Keywords: Port: py-scipy | -------------------------------+-------------------- Changes (by macsforever2000@…): * status: new => closed * resolution: => worksforme Comment: Yes, seems to work for me now too. @david.w.watson: Re-open the ticket and post a complete log for your primary python if this still is not working for you. -- Ticket URL: <https://trac.macports.org/ticket/38724#comment:9> MacPorts <http://www.macports.org/> Ports system for OS X

#38724: py*-scipy fail to upgrade to 0.12.0 -------------------------------+-------------------- Reporter: david.w.watson@… | Owner: sean@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: worksforme | Keywords: Port: py-scipy | -------------------------------+-------------------- Comment (by amicitas+macports@…): I have just tried a "port selfupdate" and then a "port clean py27-scipy" followed by "port upgrade outdated" or "port upgrade py27-scipy". Still running into the same issue as reported here previously: "Symbol not found: _omp_get_num_threads". I have attached the log file. -- Ticket URL: <https://trac.macports.org/ticket/38724#comment:12> MacPorts <http://www.macports.org/> Ports system for OS X

#38724: py*-scipy fail to upgrade to 0.12.0 -------------------------------+-------------------- Reporter: david.w.watson@… | Owner: sean@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: worksforme | Keywords: Port: py-scipy | -------------------------------+-------------------- Comment (by michaelld@…): Any of the log files from "david.w.watson" and "amicitas+macports" -- the ones that include "from numpy.linalg import lapack_lite" failing: We're tracking that issue in ticket #37415. I would recommend you doing: {{{ sudo port -f uninstall atlas pyXY-numpy pyXY-scipy sudo port selfupdate sudo port install atlas +variants sudo port install pyXY-numpy +atlas +variants sudo port install pyXY-scipy +atlas +variants }}} but replace "XY" by the correct python version, and "+variants" by your chosen variants (e.g., "+gcc47"). I'm pretty sure you need to start by reinstalling atlas, then numpy, then scipy, in that order. And, that you need to uninstall them first. -- Ticket URL: <https://trac.macports.org/ticket/38724#comment:14> MacPorts <http://www.macports.org/> Ports system for OS X

#38724: py*-scipy fail to upgrade to 0.12.0 -------------------------------+-------------------- Reporter: david.w.watson@… | Owner: sean@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: worksforme | Keywords: Port: py-scipy | -------------------------------+-------------------- Comment (by stromnov@…): Replying to [comment:15 michaelld@…]:

As for the "error: cblas.pyf.src: No such file or directory" issue: Is there a patch from that ticket that we can apply as a temporary measure to get scipy back working again? Patch already incorporated into source tarball (see comment:10).

-- Ticket URL: <https://trac.macports.org/ticket/38724#comment:16> MacPorts <http://www.macports.org/> Ports system for OS X

#38724: py*-scipy fail to upgrade to 0.12.0 -------------------------------+-------------------- Reporter: david.w.watson@… | Owner: sean@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: worksforme | Keywords: Port: py-scipy | -------------------------------+-------------------- Comment (by stromnov@…): Yes, fix already in the tarball we're using (missing files were added to source tarball without revision bump, so-called "stealth update" at r105087, for more details see http://projects.scipy.org/scipy/ticket/1888). -- Ticket URL: <https://trac.macports.org/ticket/38724#comment:18> MacPorts <http://www.macports.org/> Ports system for OS X

#38724: py*-scipy fail to upgrade to 0.12.0 -------------------------------+-------------------- Reporter: david.w.watson@… | Owner: sean@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: worksforme | Keywords: Port: py-scipy | -------------------------------+-------------------- Comment (by amicitas+macports@…): For the _omp_get_num_threads issue. The procedure suggested by @michaelld did not work, but I finally got py27-scipy to install doing the following: {{{ sudo port -f uninstall atlas pyXY-numpy pyXY-scipy sudo port selfupdate sudo port install atlas +gcc46 sudo port install pyXY-numpy +atlas +gcc47 sudo port install pyXY-scipy +atlas +gcc47 }}} The point here is that this did not work until I complied atlas using gcc46. -- Ticket URL: <https://trac.macports.org/ticket/38724#comment:23> MacPorts <http://www.macports.org/> Ports system for OS X

#38724: py*-scipy fail to upgrade to 0.12.0 -------------------------------+-------------------- Reporter: david.w.watson@… | Owner: sean@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: worksforme | Keywords: Port: py-scipy | -------------------------------+-------------------- Comment (by amicitas+macports@…): In this particular case I used +gcc46 for atlas, and +gcc47 for numpy/scipy (I did this mostly as a way to isolate the problem a bit.) So far everything appears to be working without issue even with the mixed compiler versions. -- Ticket URL: <https://trac.macports.org/ticket/38724#comment:25> MacPorts <http://www.macports.org/> Ports system for OS X