#43322: py-scipy @0.13.3_1: builds agains ATLAS (variant +atlas) Seg. fault during testing. -----------------------------+-------------------------------- Reporter: Peter.Danecek@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: py-scipy atlas -----------------------------+-------------------------------- I built py-scipy against ATLAS. This version of scipy crashes during testing with a Segmentation fault. The details below are for `py27-scipy +atlas`, but it was observed before (version @0.13.3) with other python subports as well. There seem to be some //real failures// before the crash as well. {{{ In [2]: import scipy In [3]: scipy.test() Running unit tests for scipy NumPy version 1.8.0 NumPy is installed in /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/numpy SciPy version 0.13.3 SciPy is installed in /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy Python version 2.7.6 (default, Nov 22 2013, 13:39:24) [GCC 4.2.1 Compatible Apple Clang 4.1 ((tags/Apple/clang-421.11.66))] nose version 1.3.1 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/numpy/lib/utils.py:134: DeprecationWarning: `scipy.lib.blas` is deprecated, use `scipy.linalg.blas` instead! warnings.warn(depdoc, DeprecationWarning) /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/numpy/lib/utils.py:134: DeprecationWarning: `scipy.lib.lapack` is deprecated, use `scipy.linalg.lapack` instead! warnings.warn(depdoc, DeprecationWarning) ..............................................................................................................................................................................................................................K..................................................................................................................K.......................................................................................K..K...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................F..FF......................................................................................................................................SSSSSS......SSSSSS......SSSS..............................FFF.....................................................0-th dimension must be fixed to 3 but got 15 ..0-th dimension must be fixed to 3 but got 5 ...F.Segmentation fault }}} ATLAS is installed as: {{{ atlas @3.10.1_5+mpclang33 (active) }}} I also attach a crash report in the hope that it might help. Not sure if this could be due to compiler mismatch. I CC Vince as atlas maintainer as well. -- Ticket URL: <https://trac.macports.org/ticket/43322> MacPorts <http://www.macports.org/> Ports system for OS X