#18246: linker error in openmpi port -------------------------------+-------------------------------------------- Reporter: gamperl@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.7.0 Keywords: | Port: openmpi -------------------------------+-------------------------------------------- Updating the openmpi results in the following error: {{{ ---> Building openmpi Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build" && make all " returned error 2 Command output: Making all in mca/rmaps/round_robin make[2]: Nothing to be done for `all'. Making all in mca/rmaps/seq make[2]: Nothing to be done for `all'. Making all in mca/rml/oob make[2]: Nothing to be done for `all'. Making all in mca/routed/binomial make[2]: Nothing to be done for `all'. Making all in mca/routed/direct make[2]: Nothing to be done for `all'. Making all in mca/routed/linear make[2]: Nothing to be done for `all'. Making all in tools/orte-checkpoint make[2]: Nothing to be done for `all'. Making all in tools/orte-clean make[2]: Nothing to be done for `all'. Making all in tools/orte-iof /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-strict-aliasing -fvisibility=hidden -export- dynamic -L/opt/local/lib -o orte-iof orte-iof.o ../../../orte/libopen- rte.la -lutil libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno- strict-aliasing -fvisibility=hidden -o orte-iof orte-iof.o -L/opt/local/lib ../../../orte/.libs/libopen-rte.a /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build/opal/.libs /libopen-pal.a -lutil Undefined symbols: "_orte_iof", referenced from: _orte_iof$non_lazy_ptr in orte-iof.o "_orte_routed", referenced from: _orte_routed$non_lazy_ptr in libopen-rte.a(hnp_contact.o) _orte_routed$non_lazy_ptr in libopen-rte.a(rml_base_contact.o) ld: symbol(s) not found collect2: ld returned 1 exit status make[2]: *** [orte-iof] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all-recursive] Error 1 Error: Unable to upgrade port: 1 ---> Activating hdf5 @1.6.8_0 Error: Activating hdf5 @1.6.8_0 failed: Image error: /opt/local/bin/gif2h5 is being used by the active hdf5-18 port. Please deactivate this port first, or use the -f flag to force the activation. ---> Activating hdf5 @1.6.8_0 Error: Activating hdf5 @1.6.8_0 failed: Image error: /opt/local/bin/gif2h5 is being used by the active hdf5-18 port. Please deactivate this port first, or use the -f flag to force the activation. ---> Building openmpi Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build" && make all " returned error 2 Command output: Making all in mca/rmaps/round_robin make[2]: Nothing to be done for `all'. Making all in mca/rmaps/seq make[2]: Nothing to be done for `all'. Making all in mca/rml/oob make[2]: Nothing to be done for `all'. Making all in mca/routed/binomial make[2]: Nothing to be done for `all'. Making all in mca/routed/direct make[2]: Nothing to be done for `all'. Making all in mca/routed/linear make[2]: Nothing to be done for `all'. Making all in tools/orte-checkpoint make[2]: Nothing to be done for `all'. Making all in tools/orte-clean make[2]: Nothing to be done for `all'. Making all in tools/orte-iof /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-strict-aliasing -fvisibility=hidden -export- dynamic -L/opt/local/lib -o orte-iof orte-iof.o ../../../orte/libopen- rte.la -lutil libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno- strict-aliasing -fvisibility=hidden -o orte-iof orte-iof.o -L/opt/local/lib ../../../orte/.libs/libopen-rte.a /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build/opal/.libs /libopen-pal.a -lutil Undefined symbols: "_orte_iof", referenced from: _orte_iof$non_lazy_ptr in orte-iof.o "_orte_routed", referenced from: _orte_routed$non_lazy_ptr in libopen-rte.a(hnp_contact.o) _orte_routed$non_lazy_ptr in libopen-rte.a(rml_base_contact.o) ld: symbol(s) not found collect2: ld returned 1 exit status make[2]: *** [orte-iof] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all-recursive] Error 1 }}} -- Ticket URL: <http://trac.macports.org/ticket/18246> MacPorts <http://www.macports.org/> Ports system for Mac OS