[MacPorts] #34494: Problems installing hdf5 with new version of Macports
#34494: Problems installing hdf5 with new version of Macports ----------------------------------+----------------------------------------- Reporter: steeves@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Keywords: rev-update hdf5 | Port: hdf5 ----------------------------------+----------------------------------------- Starting from fresh install, running "port install hdf5" fails with Error: Port hdf5 is still broken after rebuiling it more than 3 times. Error: Please run port -d -y rev-upgrade and use the output to report a bug. Port hdf5 still broken after rebuilding 3 time(s) while executing "error "Port $portname still broken after rebuilding [expr $broken_port_counts($portname) - 1] time(s)"" (procedure "revupgrade_scanandrebuild" line 240) invoked from within "revupgrade_scanandrebuild broken_port_counts $opts" (procedure "macports::revupgrade" line 5) invoked from within "macports::revupgrade $opts" (procedure "action_revupgrade" line 2) invoked from within "action_revupgrade $action $portlist $opts" (procedure "action_target" line 94) invoked from within "$action_proc $action $portlist [array get global_options]" (procedure "process_cmd" line 95) invoked from within "process_cmd $remaining_args" invoked from within "if { [llength $remaining_args] > 0 } { # If there are remaining arguments, process those as a command set exit_status [process_cmd $remaining..." (file "/opt/local/bin/port" line 4784) [steevmi1@phusca-l24500][20:27] [~/] % sudo port -d -y rev-upgrade Password: DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/bugpoint DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/lli DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ar DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-as DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-bcanalyzer DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-cov DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-diff DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-dis DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-dwarfdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-extract DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-link DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-mc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-nm DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-objdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-prof DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ranlib DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-rtdyld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-size DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/macho-dump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/opt DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/ld64/ld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/bugpoint DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/lli DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-ar DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-as DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-bcanalyzer DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-diff DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-dis DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-extract DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-ld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-link DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-mc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-nm DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-objdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-prof DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-ranlib DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvmc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/macho-dump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/opt ---> Scanning binaries for linking errors Could not open /opt/local/lib/libh5test.0.dylib: Error opening or reading file (referenced from /opt/local/bin/h5perf) DEBUG: Marking /opt/local/bin/h5perf as broken ---> Found 1 broken file(s), matching files to ports ---> Found 1 broken port(s), determining rebuild order DEBUG: Processing port hdf5 @0:1.6.9_1 ---> Rebuilding in order hdf5 @1.6.9 DEBUG: epoch: in tree: 0 installed: 0 DEBUG: hdf5 1.6.9_1 exists in the ports tree DEBUG: hdf5 1.6.9_1 is the latest installed DEBUG: hdf5 1.6.9_1 is active DEBUG: Merging existing variants '' into variants DEBUG: new fully merged portvariants: DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5 DEBUG: OS darwin/10.8.0 (Mac OS X 10.6) arch i386 DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided DEBUG: org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided DEBUG: org.macports.distfiles registered provides 'distfiles', a pre- existing procedure. Target override will not be provided DEBUG: universal_variant is false, so not adding the default universal variant DEBUG: Not following dependencies Skipping deactivate hdf5 @1.6.9_1 (dry run) Skipping activate hdf5 @1.6.9_1 (dry run) DEBUG: Rebuilding port hdf5 finished with status 0 Warning: If this was no dry run, rev-upgrade would now run the checks again to find unresolved and newly created problems -- Ticket URL: <https://trac.macports.org/ticket/34494> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5 is still broken after rebuiling it more than 3 times ----------------------------------+----------------------------------------- Reporter: steeves@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Keywords: rev-update | Port: hdf5 ----------------------------------+----------------------------------------- Changes (by ryandesign@…): * keywords: rev-update hdf5 => rev-update Old description:
Starting from fresh install, running "port install hdf5" fails with
Error: Port hdf5 is still broken after rebuiling it more than 3 times. Error: Please run port -d -y rev-upgrade and use the output to report a bug. Port hdf5 still broken after rebuilding 3 time(s) while executing "error "Port $portname still broken after rebuilding [expr $broken_port_counts($portname) - 1] time(s)"" (procedure "revupgrade_scanandrebuild" line 240) invoked from within "revupgrade_scanandrebuild broken_port_counts $opts" (procedure "macports::revupgrade" line 5) invoked from within "macports::revupgrade $opts" (procedure "action_revupgrade" line 2) invoked from within "action_revupgrade $action $portlist $opts" (procedure "action_target" line 94) invoked from within "$action_proc $action $portlist [array get global_options]" (procedure "process_cmd" line 95) invoked from within "process_cmd $remaining_args" invoked from within "if { [llength $remaining_args] > 0 } {
# If there are remaining arguments, process those as a command set exit_status [process_cmd $remaining..." (file "/opt/local/bin/port" line 4784)
[steevmi1@phusca-l24500][20:27] [~/] % sudo port -d -y rev-upgrade Password: DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/bugpoint DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/lli DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ar DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-as DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-bcanalyzer DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-cov DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-diff DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-dis DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-dwarfdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-extract DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-link DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-mc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-nm DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-objdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-prof DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ranlib DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-rtdyld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-size DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/macho-dump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/opt DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/ld64/ld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/bugpoint DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/lli DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-ar DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-as DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-bcanalyzer DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-diff DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-dis DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-extract DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-ld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-link DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-mc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-nm DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-objdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-prof DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-ranlib DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvmc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/macho-dump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/opt ---> Scanning binaries for linking errors Could not open /opt/local/lib/libh5test.0.dylib: Error opening or reading file (referenced from /opt/local/bin/h5perf) DEBUG: Marking /opt/local/bin/h5perf as broken
---> Found 1 broken file(s), matching files to ports ---> Found 1 broken port(s), determining rebuild order DEBUG: Processing port hdf5 @0:1.6.9_1 ---> Rebuilding in order hdf5 @1.6.9 DEBUG: epoch: in tree: 0 installed: 0 DEBUG: hdf5 1.6.9_1 exists in the ports tree DEBUG: hdf5 1.6.9_1 is the latest installed DEBUG: hdf5 1.6.9_1 is active DEBUG: Merging existing variants '' into variants DEBUG: new fully merged portvariants: DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5 DEBUG: OS darwin/10.8.0 (Mac OS X 10.6) arch i386 DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided DEBUG: org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided DEBUG: org.macports.distfiles registered provides 'distfiles', a pre- existing procedure. Target override will not be provided DEBUG: universal_variant is false, so not adding the default universal variant DEBUG: Not following dependencies Skipping deactivate hdf5 @1.6.9_1 (dry run) Skipping activate hdf5 @1.6.9_1 (dry run) DEBUG: Rebuilding port hdf5 finished with status 0 Warning: If this was no dry run, rev-upgrade would now run the checks again to find unresolved and newly created problems
New description: Starting from fresh install, running "port install hdf5" fails with {{{ Error: Port hdf5 is still broken after rebuiling it more than 3 times. Error: Please run port -d -y rev-upgrade and use the output to report a bug. Port hdf5 still broken after rebuilding 3 time(s) while executing "error "Port $portname still broken after rebuilding [expr $broken_port_counts($portname) - 1] time(s)"" (procedure "revupgrade_scanandrebuild" line 240) invoked from within "revupgrade_scanandrebuild broken_port_counts $opts" (procedure "macports::revupgrade" line 5) invoked from within "macports::revupgrade $opts" (procedure "action_revupgrade" line 2) invoked from within "action_revupgrade $action $portlist $opts" (procedure "action_target" line 94) invoked from within "$action_proc $action $portlist [array get global_options]" (procedure "process_cmd" line 95) invoked from within "process_cmd $remaining_args" invoked from within "if { [llength $remaining_args] > 0 } { # If there are remaining arguments, process those as a command set exit_status [process_cmd $remaining..." (file "/opt/local/bin/port" line 4784) [steevmi1@phusca-l24500][20:27] [~/] % sudo port -d -y rev-upgrade Password: DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/bugpoint DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/lli DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ar DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-as DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-bcanalyzer DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-cov DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-diff DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-dis DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-dwarfdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-extract DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-link DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-mc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-nm DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-objdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-prof DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-ranlib DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-rtdyld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/llvm-size DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/macho-dump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-3.0/bin/opt DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/ld64/ld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/bugpoint DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/lli DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-ar DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-as DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-bcanalyzer DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-diff DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-dis DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-extract DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-ld DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-link DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-mc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-nm DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-objdump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-prof DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvm-ranlib DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/llvmc DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/macho-dump DEBUG: Ignoring loadcommand containing @executable_path in /opt/local/libexec/llvm-2.9/bin/opt ---> Scanning binaries for linking errors Could not open /opt/local/lib/libh5test.0.dylib: Error opening or reading file (referenced from /opt/local/bin/h5perf) DEBUG: Marking /opt/local/bin/h5perf as broken ---> Found 1 broken file(s), matching files to ports ---> Found 1 broken port(s), determining rebuild order DEBUG: Processing port hdf5 @0:1.6.9_1 ---> Rebuilding in order hdf5 @1.6.9 DEBUG: epoch: in tree: 0 installed: 0 DEBUG: hdf5 1.6.9_1 exists in the ports tree DEBUG: hdf5 1.6.9_1 is the latest installed DEBUG: hdf5 1.6.9_1 is active DEBUG: Merging existing variants '' into variants DEBUG: new fully merged portvariants: DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5 DEBUG: OS darwin/10.8.0 (Mac OS X 10.6) arch i386 DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided DEBUG: org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided DEBUG: org.macports.distfiles registered provides 'distfiles', a pre- existing procedure. Target override will not be provided DEBUG: universal_variant is false, so not adding the default universal variant DEBUG: Not following dependencies Skipping deactivate hdf5 @1.6.9_1 (dry run) Skipping activate hdf5 @1.6.9_1 (dry run) DEBUG: Rebuilding port hdf5 finished with status 0 Warning: If this was no dry run, rev-upgrade would now run the checks again to find unresolved and newly created problems }}} -- Comment: Please use WikiFormatting when writing in Trac. -- Ticket URL: <https://trac.macports.org/ticket/34494#comment:1> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5: broken file found by rev-upgrade ----------------------------------+----------------------------------------- Reporter: steeves@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Keywords: | Port: hdf5 ----------------------------------+----------------------------------------- Changes (by jmr@…): * keywords: rev-update => -- Ticket URL: <https://trac.macports.org/ticket/34494#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5: broken file found by rev-upgrade ----------------------------------+----------------------------------------- Reporter: steeves@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Keywords: | Port: hdf5 ----------------------------------+----------------------------------------- Comment(by ryandesign@…): Has duplicate #34683. -- Ticket URL: <https://trac.macports.org/ticket/34494#comment:4> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5: broken file found by rev-upgrade ----------------------------------+----------------------------------------- Reporter: steeves@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Keywords: | Port: hdf5 ----------------------------------+----------------------------------------- Comment(by asnedden@…): This issue is quite aggravating because it seems that when I try installing other ports, macports searches for 'broken files' and now always finds this hdf5 issue and it appears that it is preventing the installation of other programs. I tried building fftw@2.1.5 via macports I got the identical message as described here https://trac.macports.org/ticket/34591. I checked for the libraries that should have been installed from fftw2.1.5. It appears that none of them were installed in /opt/local/lib as would be expected. Is there a way around this? Thanks. -- Ticket URL: <https://trac.macports.org/ticket/34494#comment:5> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5: broken file found by rev-upgrade ----------------------------------+----------------------------------------- Reporter: steeves@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Keywords: | Port: hdf5 ----------------------------------+----------------------------------------- Comment(by perutaca@…): This issue is still unresolved. I have the exact same problem and same error messages. Ideas on working around it? -- Ticket URL: <https://trac.macports.org/ticket/34494#comment:6> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5: broken file found by rev-upgrade ----------------------------------+----------------------------------------- Reporter: steeves@… | Owner: cal@… Type: defect | Status: assigned Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Keywords: rev-upgrade | Port: hdf5 ----------------------------------+----------------------------------------- Changes (by cal@…): * status: new => assigned * keywords: => rev-upgrade * owner: macports-tickets@… => cal@… -- Ticket URL: <https://trac.macports.org/ticket/34494#comment:8> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5: broken file found by rev-upgrade ----------------------------------+----------------------------------------- Reporter: steeves@… | Owner: cal@… Type: defect | Status: assigned Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Keywords: rev-upgrade | Port: hdf5 ----------------------------------+----------------------------------------- Comment(by cal@…): Where does the `hdf5` port install `/opt/local/lib/libh5test.0.dylib`? Check with `port contents hdf5 | grep dylib`. -- Ticket URL: <https://trac.macports.org/ticket/34494#comment:9> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5: broken file found by rev-upgrade ----------------------------------+----------------------------------------- Reporter: steeves@… | Owner: cal@… Type: defect | Status: assigned Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Keywords: rev-upgrade | Port: hdf5 ----------------------------------+----------------------------------------- Comment(by perutaca@…): Replying to [comment:9 cal@…]:
Where does the `hdf5` port install `/opt/local/lib/libh5test.0.dylib`? Check with `port contents hdf5 | grep dylib`. Here is the output of port contents hdf5 | grep dylib
/opt/local/lib/libhdf5.0.0.0.dylib /opt/local/lib/libhdf5.0.dylib /opt/local/lib/libhdf5.dylib /opt/local/lib/libhdf5_hl.0.0.0.dylib /opt/local/lib/libhdf5_hl.0.dylib /opt/local/lib/libhdf5_hl.dylib -- Ticket URL: <https://trac.macports.org/ticket/34494#comment:10> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5: broken file found by rev-upgrade -----------------------------------+---------------------------------------- Reporter: steeves@… | Owner: cal@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Resolution: fixed | Keywords: rev-upgrade Port: hdf5 | -----------------------------------+---------------------------------------- Changes (by cal@…): * status: assigned => closed * resolution: => fixed Comment: It seems `libh5test.dylib` only contains code used in testcases. While I could install `libh5test.dylib`, it is intended for installation. Also, the binary causing this, `h5perf` doesn't do anything other than printing {{{ :) clemens@cSchlepptop:[..]/destroot/opt/local/bin$ DYLD_LIBRARY_PATH=../lib/:../../../../hdf5-1.6.9/test/.libs/ ./h5perf No parallel IO performance because parallel is not configured }}} I think we can just remove the binary in question to fix this. I've done this in r95095. Please let me know if you think this was inappropriate. -- Ticket URL: <https://trac.macports.org/ticket/34494#comment:11> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5: broken file found by rev-upgrade -----------------------------------+---------------------------------------- Reporter: steeves@… | Owner: cal@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Resolution: fixed | Keywords: rev-upgrade Port: hdf5 | -----------------------------------+---------------------------------------- Comment(by cal@…): Replying to [comment:11 cal@…]:
While I could install `libh5test.dylib`, it is intended for installation. That should have read: "[…] it is not intended for installation."
-- Ticket URL: <https://trac.macports.org/ticket/34494#comment:12> MacPorts <http://www.macports.org/> Ports system for Mac OS
#34494: hdf5: broken file found by rev-upgrade -----------------------------------+---------------------------------------- Reporter: steeves@… | Owner: cal@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.0 Resolution: fixed | Keywords: rev-upgrade Port: hdf5 | -----------------------------------+---------------------------------------- Comment(by cal@…): Also note there's a newer version of `hdf5` available in the `hdf5-18` port. -- Ticket URL: <https://trac.macports.org/ticket/34494#comment:13> MacPorts <http://www.macports.org/> Ports system for Mac OS
participants (1)
-
MacPorts