[MacPorts] #35063: tophat error on lion
#35063: tophat error on lion ------------------------------------+--------------------------------------- Reporter: richard.zuerner@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Keywords: RNA sequence software | Port: tophat ------------------------------------+--------------------------------------- I tried running macports to install tophat on Lion but failed. I already have cufflinks and bowtie loaded via macports and would like to continue with this install using macports as well. I found the errors in the log file (attached), but not sure how to work around them. Any help would be appreciated. Thanks! -- Ticket URL: <https://trac.macports.org/ticket/35063> MacPorts <http://www.macports.org/> Ports system for Mac OS
#35063: tophat: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'? ------------------------------------+--------------------------------------- Reporter: richard.zuerner@… | Owner: haroldpimentel@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Keywords: lion | Port: tophat ------------------------------------+--------------------------------------- Changes (by ryandesign@…): * owner: macports-tickets@… => haroldpimentel@… * keywords: RNA sequence software => lion Comment: The error I see in your log is: {{{ :info:build GFaSeqGet.cpp:62:17: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'? }}} However this was not a clean attempt, so please "sudo port clean tophat", then try again; if it fails again, attach the new main.log. -- Ticket URL: <https://trac.macports.org/ticket/35063#comment:1> MacPorts <http://www.macports.org/> Ports system for Mac OS
#35063: tophat: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'? ------------------------------------+--------------------------------------- Reporter: richard.zuerner@… | Owner: haroldpimentel@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Keywords: lion | Port: tophat ------------------------------------+--------------------------------------- Comment(by richard.zuerner@…): Hi, Thanks for the quick response. I ran the clean and install commands, but with same result. The new log file and screen output are attached as files. Thanks! -- Ticket URL: <https://trac.macports.org/ticket/35063#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS
#35063: tophat: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'? --------------------------------+------------------------------ Reporter: richard.zuerner@… | Owner: haroldpimentel@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Resolution: fixed | Keywords: lion Port: tophat | --------------------------------+------------------------------ Changes (by jmr@…): * status: new => closed * resolution: => fixed Comment: r97686 -- Ticket URL: <https://trac.macports.org/ticket/35063#comment:3> MacPorts <http://www.macports.org/> Ports system for Mac OS
participants (1)
-
MacPorts