#34990: SHOGUN installation: Error: swig too old version 1.3.36 or later required -------------------------------+-------------------------------------------- Reporter: noelia@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Keywords: | Port: shogun -------------------------------+-------------------------------------------- Changes (by ryandesign@…): * owner: macports-tickets@… => jameskyle@… * cc: noelia@… (removed) * cc: ryandesign@… (added) * type: request => defect * keywords: shogun => * priority: High => Normal Comment:

The version of shogun on macports (0.9.3) came out before swig version 2.x.x. The source of the error is that configure does not check for the first digit in the version.

I'm unable to reproduce this problem. According to #25429 we already fixed this two years ago in r69300. Please "sudo port selfupdate", "sudo port clean shogun", and try again. If it still fails, attach the main.log file to this ticket.

REQUEST: Update the shogun port to the current release

This has already been requested in #33205. -- Ticket URL: <https://trac.macports.org/ticket/34990#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS

#34990: shogun: Undefined symbols: _drot_ _dswap_ __gfortran_concat_string _dgemm_ etc. -------------------------------+-------------------------------------------- Reporter: noelia@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Keywords: | Port: shogun -------------------------------+-------------------------------------------- Comment(by ryandesign@…): Ok, so the relevant error in the log seems to be: {{{ :info:build Undefined symbols for architecture x86_64: :info:build "_drot_", referenced from: :info:build _dbdsqr_ in liblapack.a(dbdsqr.o) :info:build "_dswap_", referenced from: :info:build _dbdsqr_ in liblapack.a(dbdsqr.o) :info:build _dsteqr_ in liblapack.a(dsteqr.o) :info:build (maybe you meant: _ATL_dswap_xp0yp0aXbX) :info:build "__gfortran_concat_string", referenced from: :info:build _dgesvd_ in liblapack.a(dgesvd.o) :info:build _dormbr_ in liblapack.a(dormbr.o) :info:build _dormqr_ in liblapack.a(dormqr.o) :info:build _dormlq_ in liblapack.a(dormlq.o) :info:build "_dgemm_", referenced from: :info:build _dgesvd_ in liblapack.a(dgesvd.o) :info:build _dgebrd_ in liblapack.a(dgebrd.o) :info:build "_dgemv_", referenced from: :info:build _dlabrd_ in liblapack.a(dlabrd.o) :info:build _dlatrd_ in liblapack.a(dlatrd.o) :info:build _dlarf_ in liblapack.a(dlarf.o) :info:build "_dger_", referenced from: :info:build _dlarf_ in liblapack.a(dlarf.o) :info:build (maybe you meant: _ATL_dger_L1, _ATL_dger_L2 , _ATL_dger_OOC ) :info:build "_dnrm2_", referenced from: :info:build _dlarfg_ in liblapack.a(dlarfg.o) :info:build (maybe you meant: _ATL_dnrm2_xp1yp0aXbX, _ATL_dnrm2_xp0yp0aXbX ) :info:build "_dcopy_", referenced from: :info:build _dlasq1_ in liblapack.a(dlasq1.o) :info:build (maybe you meant: _ATL_dcopy_xp1yp1aXbX, _ATL_dcopy_xp0yp0aXbX ) :info:build "_dsymv_", referenced from: :info:build _dlatrd_ in liblapack.a(dlatrd.o) :info:build _dsytd2_ in liblapack.a(dsytd2.o) :info:build "_ddot_", referenced from: :info:build _dlatrd_ in liblapack.a(dlatrd.o) :info:build _dsytd2_ in liblapack.a(dsytd2.o) :info:build (maybe you meant: _ATL_ddot_xp1yp1aXbX, _ATL_ddot_xp0yp0aXbX ) :info:build "_daxpy_", referenced from: :info:build _dlatrd_ in liblapack.a(dlatrd.o) :info:build _dsytd2_ in liblapack.a(dsytd2.o) :info:build (maybe you meant: _ATL_daxpy_xp1yp1aXbX, _ATL_daxpy_xp0yp0aXbX ) :info:build "_lsame_", referenced from: :info:build _dsyev_ in liblapack.a(dsyev.o) :info:build _dgesvd_ in liblapack.a(dgesvd.o) :info:build _dorgbr_ in liblapack.a(dorgbr.o) :info:build _dlange_ in liblapack.a(dlange.o) :info:build _dlaset_ in liblapack.a(dlaset.o) :info:build _dbdsqr_ in liblapack.a(dbdsqr.o) :info:build _dlacpy_ in liblapack.a(dlacpy.o) :info:build ... :info:build "_xerbla_", referenced from: :info:build _dsyev_ in liblapack.a(dsyev.o) :info:build _dgesvd_ in liblapack.a(dgesvd.o) :info:build _dgeqrf_ in liblapack.a(dgeqrf.o) :info:build _dorgqr_ in liblapack.a(dorgqr.o) :info:build _dgebrd_ in liblapack.a(dgebrd.o) :info:build _dorgbr_ in liblapack.a(dorgbr.o) :info:build _dgelqf_ in liblapack.a(dgelqf.o) :info:build ... :info:build "_dscal_", referenced from: :info:build _dsyev_ in liblapack.a(dsyev.o) :info:build _dbdsqr_ in liblapack.a(dbdsqr.o) :info:build _dlabrd_ in liblapack.a(dlabrd.o) :info:build _dorgl2_ in liblapack.a(dorgl2.o) :info:build _dorg2r_ in liblapack.a(dorg2r.o) :info:build _dlatrd_ in liblapack.a(dlatrd.o) :info:build _dlarfg_ in liblapack.a(dlarfg.o) :info:build ... :info:build (maybe you meant: _ATL_dscal_xp1yp0aXbX, _ATL_dscal_xp0yp0aXbX ) :info:build "_dsyr2_", referenced from: :info:build _dsytd2_ in liblapack.a(dsytd2.o) :info:build "_dsyr2k_", referenced from: :info:build _dsytrd_ in liblapack.a(dsytrd.o) :info:build "__gfortran_compare_string", referenced from: :info:build _ilaenv_ in liblapack.a(ilaenv.o) :info:build ld: symbol(s) not found for architecture x86_64 }}} -- Ticket URL: <https://trac.macports.org/ticket/34990#comment:4> MacPorts <http://www.macports.org/> Ports system for Mac OS

#34990: shogun: Undefined symbols: _drot_ _dswap_ __gfortran_concat_string _dgemm_ etc. -------------------------------+-------------------------------------------- Reporter: noelia@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Keywords: | Port: shogun -------------------------------+-------------------------------------------- Changes (by ryandesign@…): * cc: trandu@… (added) Comment: Has duplicate #35238. -- Ticket URL: <https://trac.macports.org/ticket/34990#comment:6> MacPorts <http://www.macports.org/> Ports system for Mac OS

#34990: shogun: Undefined symbols: _drot_ _dswap_ __gfortran_concat_string _dgemm_ etc. -----------------------+------------------------- Reporter: noelia@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Resolution: | Keywords: Port: shogun | -----------------------+------------------------- Changes (by ryandesign@…): * cc: kyunghee.kim@… (added) Comment: Replying to [comment:7 kyunghee.kim@…]:

I am trying to install shogun now and have the same problem. Does anyone know how this problem has been fixed?

As you have seen, it has not been fixed; that is why this ticket is still open. -- Ticket URL: <https://trac.macports.org/ticket/34990#comment:8> MacPorts <http://www.macports.org/> Ports system for Mac OS

#34990: shogun: Undefined symbols: _drot_ _dswap_ __gfortran_concat_string _dgemm_ etc. -----------------------+------------------------- Reporter: noelia@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Resolution: | Keywords: Port: shogun | -----------------------+------------------------- Comment (by ryandesign@…): Please check if this is still a problem with shogun 2.1.0. -- Ticket URL: <https://trac.macports.org/ticket/34990#comment:10> MacPorts <http://www.macports.org/> Ports system for OS X

#34990: shogun: Undefined symbols: _drot_ _dswap_ __gfortran_concat_string _dgemm_ etc. -----------------------+------------------------- Reporter: noelia@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Resolution: | Keywords: Port: shogun | -----------------------+------------------------- Changes (by ryandesign@…): * cc: denis.peruzzo@… (added) Comment: Has duplicates #39716, #40032. -- Ticket URL: <https://trac.macports.org/ticket/34990#comment:12> MacPorts <http://www.macports.org/> Ports system for OS X

#34990: shogun: Undefined symbols: _drot_ _dswap_ __gfortran_concat_string _dgemm_ etc. -----------------------+-------------------------------- Reporter: noelia@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.1 Resolution: | Keywords: snowleopard Port: shogun | -----------------------+-------------------------------- Changes (by mf2k@…): * owner: jameskyle@… => macports-tickets@… Comment: jameskyle has retired. See #44641. -- Ticket URL: <https://trac.macports.org/ticket/34990#comment:14> MacPorts <http://www.macports.org/> Ports system for OS X